EY744602

Overview
NameEY744602
Unique NameEY744602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length983
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744602 vs. ExPASy Swiss-Prot
Match: RL16B_SCHPO (60S ribosomal protein L16-B OS=Schizosaccharomyces pombe GN=rpl16b PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 6.673e-48
Identity = 93/181 (51.38%), Postives = 123/181 (67.96%), Query Frame = 3
Query:   60 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLESEVGWNYYDTIRELEKSRQERSQVAYERKKQLHKLRAKAEKGA 602
            K VV+DA+ H+LGRLAS+VAK+LL GQKVV VRCEE+ +SG   R K+KY+ +LRK     PS G  HFRAP++IF + VRGM+PHKT             EG+P P+DK KR+V+P AL+VLRL+ G KYC +GRL SEVGW Y D + +LE+ R+ +S   Y+ K    K  A A++ +
Sbjct:    6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRKVKSAAFYQAKLAKQKKIASAKEAS 186          
BLAST of EY744602 vs. ExPASy Swiss-Prot
Match: RL16C_SCHPO (60S ribosomal protein L16-C OS=Schizosaccharomyces pombe GN=rpl16c PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 3.662e-46
Identity = 92/187 (49.20%), Postives = 123/187 (65.78%), Query Frame = 3
Query:   60 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLESEVGWNYYDTIRELEKSRQERSQVAYERK--KQLHKLRAKAEKGAKKKL 614
            K V++DA+ H++GRLAS VAK+LL GQKVV VRCEE+ +SG   R K+KY+ +LRK     PS G  HFRAP++IF + VRGM+PHKT             EG+P P+DK KR+V+P AL+VLRL+   KYC +GRL SEVGW Y + + +LE+ R+ +S   Y+ K   Q H   AK +    +KL
Sbjct:    6 KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAALRVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRKIKSAAFYQAKSANQKHINVAKTKSSVNEKL 192          
BLAST of EY744602 vs. ExPASy Swiss-Prot
Match: RL13A_DICDI (60S ribosomal protein L13a OS=Dictyostelium discoideum GN=rpl13a PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 3.100e-45
Identity = 89/179 (49.72%), Postives = 118/179 (65.92%), Query Frame = 3
Query:   60 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLESEVGWNYYDTIRELEKSRQERSQVAYERKKQLHKLRAKAEK 596
            K +V+D + H+LGRLAS+VAK LL+GQK+V VRCEE+ +SG L R K+K+  FL   MNT  + G  H R+P+KIFWR VRGM+PHKT            +EGVPAPYDKVKR+V+P AL+V++L    KY +L RL  EVGW Y   + +LE  R++RS   Y +   +   R +A K
Sbjct:    5 KAIVIDGKGHLLGRLASVVAKSLLSGQKIVVVRCEELNISGPLSRNKLKWADFLNLTMNTNHARGHRHGRSPSKIFWRAVRGMLPHKTPRGQAALDNMKVFEGVPAPYDKVKRVVVPSALRVVKLNTTRKYTVLSRLSQEVGWKYRAVVAKLEVQRKQRSSTYYRKAALVKAYRTQALK 183          
BLAST of EY744602 vs. ExPASy Swiss-Prot
Match: RL16A_YEAST (60S ribosomal protein L16-A OS=Saccharomyces cerevisiae GN=RPL16A PE=1 SV=3)

HSP 1 Score: 177.948 bits (450), Expect = 7.635e-44
Identity = 87/186 (46.77%), Postives = 120/186 (64.52%), Query Frame = 3
Query:   66 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLESEVGWNYYDTIRELEKSRQERSQVAYERKKQLHKLRAKAEKGAKKKLVSQ 623
            VV+D + H++GRLAS+VAK+LLNGQK+V VR EE+ +SG   R K+KY  FLRK      + GP HFRAP++IF++ +RGM+ HKT            +EG+P PYDK KR+V+P AL+VLRL+ G KY  LG+L + VGW Y D + +LE  R+  S   Y +K+   K  A A   A +  V++
Sbjct:    7 VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAK 192          
BLAST of EY744602 vs. ExPASy Swiss-Prot
Match: RL16B_YEAST (60S ribosomal protein L16-B OS=Saccharomyces cerevisiae GN=RPL16B PE=1 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 2.222e-43
Identity = 85/186 (45.70%), Postives = 119/186 (63.98%), Query Frame = 3
Query:   66 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLESEVGWNYYDTIRELEKSRQERSQVAYERKKQLHKLRAKAEKGAKKKLVSQ 623
            VV+DA+ H+LGRLAS +AK++LNGQK+V VR E + +SG   R K+KY  FLRK      + GP HFRAP++I ++ +RGM+ HKT            +EG+P PYDK KR+V+P AL+VLRL+ G KY  LG+L + VGW Y D + +LE  R+ RS   Y +K+   K  + A   A +  V++
Sbjct:    6 VVIDAKDHLLGRLASTIAKQVLNGQKIVVVRAEALNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEDKRKVRSAEYYAKKRAFTKKVSSASAAASESDVAK 191          
BLAST of EY744602 vs. ExPASy Swiss-Prot
Match: RL13A_PIG (60S ribosomal protein L13a (Fragment) OS=Sus scrofa GN=RPL13A PE=2 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 3.547e-41
Identity = 81/135 (60.00%), Postives = 101/135 (74.81%), Query Frame = 3
Query:   66 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRL 470
            +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG   R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K+  LGRL
Sbjct:    3 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKLTGKFXYLGRL 137          
BLAST of EY744602 vs. ExPASy Swiss-Prot
Match: R13AX_HUMAN (Putative 60S ribosomal protein L13a-like MGC87657 OS=Homo sapiens PE=5 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.110e-18
Identity = 46/101 (45.54%), Postives = 63/101 (62.38%), Query Frame = 3
Query:  306 MIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLESEVGWNYYDTIRELEKSRQERSQVAYERKKQLHKLRAKAEKGAKK 608
            M+ HKT            ++G+P PYDK KRMV+P ALKV+RL+   K+ LLGR   EV W Y      LE+ R+E++++ Y +KKQL +LR +AEK  KK
Sbjct:    1 MLRHKTKRGHASLDCLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFALLGRQAQEVRWKYQAVTATLEEKRKEKAKIHYWKKKQLMRLRKQAEKNVKK 101          
BLAST of EY744602 vs. ExPASy Swiss-Prot
Match: RLSX_METTH (Fused L13/S9 ribosomal protein OS=Methanobacterium thermoautotrophicum GN=rpl13p/rps9p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.970e-13
Identity = 46/141 (32.62%), Postives = 77/141 (54.61%), Query Frame = 3
Query:   66 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSH-GPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLESEVG 485
            ++++   H+LGRLAS+V+K+LL G++V+ +  E+I ++G       KY + + +   + P   GP + R P  IF RTVRGM+P+K             Y G+P  +   + + IPDA K   ++KG +   LG +   +G
Sbjct:    4 MIINGEGHILGRLASVVSKKLLEGEEVIVLNAEKILITGSKEWAYGKYKQRIDRASISNPRRMGPKYPRRPDDIFRRTVRGMLPYKKSKGREAFKGLKAYVGIPREFKDEEMVEIPDA-KAGSIKKGME---LGEISELLG 140          
BLAST of EY744602 vs. ExPASy Swiss-Prot
Match: RL13_ARCFU (50S ribosomal protein L13P OS=Archaeoglobus fulgidus GN=rpl13p PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.189e-12
Identity = 48/140 (34.29%), Postives = 72/140 (51.43%), Query Frame = 3
Query:   69 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLESEVGW 488
            V+DA  H+LGRL+S +AK LLNG+++V V  E+  ++G    + M + R+  K        GP   R P +IF RTVRGM+P K+            + GVP      +   I DAL + ++ K  KY  L  +   +G+
Sbjct:   18 VIDASGHILGRLSSKIAKRLLNGERIVVVNAEKAVITGD---KYMVFERYKEKYDRGSKEKGPYFPRHPERIFKRTVRGMLPWKSSRGRDAYRRLRVFMGVPEELQGREFEKIEDAL-LEKVSKTDKYVTLAEVSRYLGF 153          
BLAST of EY744602 vs. ExPASy Swiss-Prot
Match: RL13_METAC (50S ribosomal protein L13P OS=Methanosarcina acetivorans GN=rpl13p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.028e-12
Identity = 51/143 (35.66%), Postives = 75/143 (52.45%), Query Frame = 3
Query:   60 KRVVVDARHHMLGRLASIVAKELLNG-QKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLESEVG 485
            K  V+DA+  +LGRLAS VAK+LL+G +KV  +  E+  +SG       +Y R  R+R  T+   GP   + P +I  RT+RGM+P+K             Y GVP      + + IPDA   +RL    +Y  LG +  ++G
Sbjct:    3 KMTVIDAKGLILGRLASSVAKQLLSGDEKVYIINAEQAIISGSRAATLREY-RETRERGATE--FGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPYELKGAETVTIPDA--DMRLLSSSRYVELGEVSQKMG 140          
The following BLAST results are available for this feature:
BLAST of EY744602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
RL16B_SCHPO6.673e-4851.3860S ribosomal protein L16-B OS=Schizosaccharomyces... [more]
RL16C_SCHPO3.662e-4649.2060S ribosomal protein L16-C OS=Schizosaccharomyces... [more]
RL13A_DICDI3.100e-4549.7260S ribosomal protein L13a OS=Dictyostelium discoi... [more]
RL16A_YEAST7.635e-4446.7760S ribosomal protein L16-A OS=Saccharomyces cerev... [more]
RL16B_YEAST2.222e-4345.7060S ribosomal protein L16-B OS=Saccharomyces cerev... [more]
RL13A_PIG3.547e-4160.0060S ribosomal protein L13a (Fragment) OS=Sus scrof... [more]
R13AX_HUMAN1.110e-1845.54Putative 60S ribosomal protein L13a-like MGC87657 ... [more]
RLSX_METTH6.970e-1332.62Fused L13/S9 ribosomal protein OS=Methanobacterium... [more]
RL13_ARCFU1.189e-1234.2950S ribosomal protein L13P OS=Archaeoglobus fulgid... [more]
RL13_METAC2.028e-1235.6650S ribosomal protein L13P OS=Methanosarcina aceti... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C5-003-002-D10-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744602 ID=EY744602; Name=EY744602; organism=Citrus sinensis; type=EST; length=983bp
CCACGCGTCCGAGAGAGAGAGGAACCCTAATAATGGTGTCGGGATCGGGA
ATCTGCGCGAAGCGAGTGGTGGTGGACGCACGCCACCACATGCTGGGGCG
GCTGGCGTCGATCGTGGCCAAGGAGCTCCTCAACGGACAGAAAGTCGTCG
CGGTCCGCTGCGAAGAGATTTGCATGTCCGGCGGCCTCGTCCGCCAGAAA
ATGAAGTACATGCGGTTCCTTCGCAAGCGCATGAACACCAAGCCTTCTCA
CGGTCCCATCCACTTCCGCGCCCCTGCCAAGATCTTCTGGCGCACCGTCC
GCGGGATGATACCGCATAAGACCAAGCGTGGAGCTGCAGCACTTGCTCGA
TTGAAGGCATATGAAGGGGTCCCTGCACCTTATGACAAGGTGAAGAGAAT
GGTTATCCCCGACGCTCTCAAGGTTTTGAGGCTTCAGAAGGGTCACAAGT
ACTGCTTGTTAGGTCGCCTGGAATCTGAGGTTGGATGGAATTATTATGAC
ACCATCAGGGAGCTTGAGAAGAGTAGACAGGAGAGGTCACAGGTGGCTTA
TGAGAGGAAGAAGCAGCTCCACAAACTTAGGGCTAAGGCTGAAAAGGGTG
CAAAAAAAAAACTGGTCTCGCAATTGTACATCCCTGGCTCCCGGCCAAAT
ATTGATCAATTTGCCTCGTGAAAAAAATTTTTGGTTGGGGATTGTCTTGA
ATTTTCCTTGGGGTTTTCCAACTTGGTTCAAGAAATTTTTAGAAGCAAAA
AATTTGGAGACAACTTGGAATGGAATAGCTTTTTTTTTTCGCCCACTTAA
ATGCGGTGGGTTCGTAAAAGGATTTTCCCTTTTAGTTCCAAAAAAAGATC
GGGGGGGGGGGGTTGTTTTTGCGCTAGGGGCCACGATTAATACGACAGAC
GGGAAACACAGAGGTCGCGCGCAACGGAGGAGCAGCGAACGACGCAACCA
GCTCGAACCGGCTGCCGAACGGACACCCGCTGA
back to top