EY744602

Overview
NameEY744602
Unique NameEY744602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length983
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744602 vs. ExPASy Swiss-Prot
Match: RL13_METBF (50S ribosomal protein L13P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl13p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.242e-11
Identity = 49/140 (35.00%), Postives = 73/140 (52.14%), Query Frame = 3
Query:   69 VVDARHHMLGRLASIVAKELLNG-QKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLESEVG 485
            V+DA   +LGRLAS VAK+LL+G +++  V  E+  +SG       +Y R  R+R +T+   GP   + P +I  RT+RGM+P+K             Y GVP      + + I DA   +RL    KY  LG +  ++G
Sbjct:    3 VIDANGLILGRLASTVAKQLLSGDEEIYIVNAEKAVISGSRATTLKEY-RETRERGSTE--FGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPTELKDTETITIADA--DMRLLSSSKYIELGEVSQKMG 137          
BLAST of EY744602 vs. ExPASy Swiss-Prot
Match: RL13_METKA (50S ribosomal protein L13P OS=Methanopyrus kandleri GN=rpl13p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.928e-11
Identity = 45/142 (31.69%), Postives = 72/142 (50.70%), Query Frame = 3
Query:   69 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQK-GHK-YCLLGRLESEVGW 488
            V+DA + +LGRLAS+VAK +L G+++  +  E+  ++G   ++      +L+K     P  GP + R P  IF R VRGM+P KT            Y G P   ++    + P+ +    + + GH  Y  LG L  E+G+
Sbjct:   17 VIDAENAVLGRLASVVAKRILKGERIAVINTEKAIITG---KKNTIKEEWLQKIQRGDPKKGPFYPRRPDLIFRRVVRGMLPWKTKRGREAFKRLRAYIGTPRWVEEAN--IEPERVAEADMSRLGHLWYVTLGELSEELGY 153          
BLAST of EY744602 vs. ExPASy Swiss-Prot
Match: RL13_METMA (50S ribosomal protein L13P OS=Methanosarcina mazei GN=rpl13p PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.995e-11
Identity = 50/140 (35.71%), Postives = 72/140 (51.43%), Query Frame = 3
Query:   69 VVDARHHMLGRLASIVAKELLNG-QKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLESEVG 485
            V+DA+  +LGRLAS VAK+LL+G +KV  +  E+  +SG       +Y R  R R  T+   GP   + P +I  RT+RGM+P+K             Y GVP      +   I DA   +RL   +KY  LG +  ++G
Sbjct:    3 VIDAKGLILGRLASSVAKQLLSGDEKVYIINAEKAIISGSRAATLREY-RETRDRGATE--FGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPYELKGAETTTIADA--DMRLLSSNKYVELGEVSQKMG 137          
The following BLAST results are available for this feature:
BLAST of EY744602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
RL13_METBF2.242e-1135.0050S ribosomal protein L13P OS=Methanosarcina barke... [more]
RL13_METKA2.928e-1131.6950S ribosomal protein L13P OS=Methanopyrus kandler... [more]
RL13_METMA4.995e-1135.7150S ribosomal protein L13P OS=Methanosarcina mazei... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C5-003-002-D10-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744602 ID=EY744602; Name=EY744602; organism=Citrus sinensis; type=EST; length=983bp
CCACGCGTCCGAGAGAGAGAGGAACCCTAATAATGGTGTCGGGATCGGGA
ATCTGCGCGAAGCGAGTGGTGGTGGACGCACGCCACCACATGCTGGGGCG
GCTGGCGTCGATCGTGGCCAAGGAGCTCCTCAACGGACAGAAAGTCGTCG
CGGTCCGCTGCGAAGAGATTTGCATGTCCGGCGGCCTCGTCCGCCAGAAA
ATGAAGTACATGCGGTTCCTTCGCAAGCGCATGAACACCAAGCCTTCTCA
CGGTCCCATCCACTTCCGCGCCCCTGCCAAGATCTTCTGGCGCACCGTCC
GCGGGATGATACCGCATAAGACCAAGCGTGGAGCTGCAGCACTTGCTCGA
TTGAAGGCATATGAAGGGGTCCCTGCACCTTATGACAAGGTGAAGAGAAT
GGTTATCCCCGACGCTCTCAAGGTTTTGAGGCTTCAGAAGGGTCACAAGT
ACTGCTTGTTAGGTCGCCTGGAATCTGAGGTTGGATGGAATTATTATGAC
ACCATCAGGGAGCTTGAGAAGAGTAGACAGGAGAGGTCACAGGTGGCTTA
TGAGAGGAAGAAGCAGCTCCACAAACTTAGGGCTAAGGCTGAAAAGGGTG
CAAAAAAAAAACTGGTCTCGCAATTGTACATCCCTGGCTCCCGGCCAAAT
ATTGATCAATTTGCCTCGTGAAAAAAATTTTTGGTTGGGGATTGTCTTGA
ATTTTCCTTGGGGTTTTCCAACTTGGTTCAAGAAATTTTTAGAAGCAAAA
AATTTGGAGACAACTTGGAATGGAATAGCTTTTTTTTTTCGCCCACTTAA
ATGCGGTGGGTTCGTAAAAGGATTTTCCCTTTTAGTTCCAAAAAAAGATC
GGGGGGGGGGGGTTGTTTTTGCGCTAGGGGCCACGATTAATACGACAGAC
GGGAAACACAGAGGTCGCGCGCAACGGAGGAGCAGCGAACGACGCAACCA
GCTCGAACCGGCTGCCGAACGGACACCCGCTGA
back to top