EY744562

Overview
NameEY744562
Unique NameEY744562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length519
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744562 vs. ExPASy Swiss-Prot
Match: RL3A_SCHPO (60S ribosomal protein L3-A OS=Schizosaccharomyces pombe GN=rpl3a PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.885e-25
Identity = 53/89 (59.55%), Postives = 70/89 (78.65%), Query Frame = 3
Query:   15 TEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 281
            T+FD TEK ITPMGGF  YG+V++D++M+ G   GP KRV+TLR+SLL  TSR ALE + +K+IDT+SKFGHGRFQT  E +++ G +K
Sbjct:  296 TDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLK 384          
BLAST of EY744562 vs. ExPASy Swiss-Prot
Match: RL3_CANGA (60S ribosomal protein L3 OS=Candida glabrata GN=RPL3 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.200e-25
Identity = 54/89 (60.67%), Postives = 68/89 (76.40%), Query Frame = 3
Query:   15 TEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 281
            T FDRT+K I PMGGF HYG+V +D++M+KG   G KKRVVTLR+SL   TSR A+EE+ +K+IDT+SKFG GRFQT  EK  + G +K
Sbjct:  296 TNFDRTKKTINPMGGFVHYGMVNNDFVMVKGSIPGCKKRVVTLRKSLYTNTSRKAVEEVTLKWIDTASKFGKGRFQTPAEKHAFMGTLK 384          
BLAST of EY744562 vs. ExPASy Swiss-Prot
Match: RL3_ASPFU (60S ribosomal protein L3 OS=Aspergillus fumigatus GN=rpl3 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 4.200e-25
Identity = 53/89 (59.55%), Postives = 71/89 (79.78%), Query Frame = 3
Query:   15 TEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 281
            T+FD ++K ITPMGGF  YG VK+DY+M+KG   G KKRV+TLR++L  QTSR A E++++K+IDTSSKFGHG FQT +EK+ + G +K
Sbjct:  297 TDFDISKKQITPMGGFVRYGEVKNDYIMVKGSVPGVKKRVMTLRKTLYPQTSRRATEKVELKWIDTSSKFGHGAFQTPEEKRAFMGTLK 385          
BLAST of EY744562 vs. ExPASy Swiss-Prot
Match: RL3_DEBHA (60S ribosomal protein L3 OS=Debaryomyces hansenii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.556e-24
Identity = 52/92 (56.52%), Postives = 68/92 (73.91%), Query Frame = 3
Query:    6 TGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 281
            +G TEFDRT+K I PMGGF  YG VK+D++++KG   G KKR+VT+R+SL   TSR A E + +K+IDT+SKFG GRFQT  EK  + G +K
Sbjct:  293 SGATEFDRTKKTINPMGGFVRYGNVKNDFMLLKGSIPGVKKRIVTIRKSLYVDTSRRATENVNLKWIDTASKFGKGRFQTPAEKHAFLGTLK 384          
BLAST of EY744562 vs. ExPASy Swiss-Prot
Match: RL3_NEUCR (60S ribosomal protein L3 OS=Neurospora crassa GN=rpl-3 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.010e-23
Identity = 50/89 (56.18%), Postives = 69/89 (77.53%), Query Frame = 3
Query:   15 TEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 281
            TE D T+K ITPMGGF  YG + +D++M+KG   G KKRV+TLR+S+   TSR ALE++++K+IDTSS+FGHG FQT  EK+++ G +K
Sbjct:  297 TEVDVTKKKITPMGGFVRYGEINNDFVMVKGSVPGVKKRVMTLRKSMFVHTSRKALEKVELKWIDTSSEFGHGAFQTPAEKKQFQGTLK 385          
The following BLAST results are available for this feature:
BLAST of EY744562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL3A_SCHPO1.885e-2559.5560S ribosomal protein L3-A OS=Schizosaccharomyces ... [more]
RL3_CANGA4.200e-2560.6760S ribosomal protein L3 OS=Candida glabrata GN=RP... [more]
RL3_ASPFU4.200e-2559.5560S ribosomal protein L3 OS=Aspergillus fumigatus ... [more]
RL3_DEBHA3.556e-2456.5260S ribosomal protein L3 OS=Debaryomyces hansenii ... [more]
RL3_NEUCR3.010e-2356.1860S ribosomal protein L3 OS=Neurospora crassa GN=r... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-002-A03-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744562 ID=EY744562; Name=EY744562; organism=Citrus sinensis; type=EST; length=519bp
CTCACACTGGCATAACTGAATTTGACAGGACTGAGAAGGACATTACCCCA
ATGGGTGGCTTTCCTCACTATGGTATTGTGAAAGATGATTATTTGATGAT
CAAGGGATGCTGTGTTGGACCTAAGAAGAGGGTGGTCACGCTTCGTCAGT
CGCTTCTCAAACAGACATCTCGTTTAGCTCTTGAGGAAATCAAAATCAAG
TTCATTGATACCTCTTCCAAGTTTGGGCATGGCCGCTTCCAGACTACACA
GGAGAAACAGAAGTACTATGGACGCATGAAAGCATAATTATGCTAAAAAG
ACAAGAGTTTTGCACCGTTATAGTTAATTCAGGCAGTCTAAATTTTATCC
AGTTTGACTATCTTGGAACAGTTTTTGAGCCTGGCATCAGCTGTGTTTCT
TTTTCCTTTTTTTATTTTATTTTTTAAGAGATGGTCGTGCTTTATTCTAT
TGAATATTTTTAAATTTAAAAAAATTCCTCAGCTCCTATCTTGAAAAAAA
AAAAAAAAAAAAAAAAAAA
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