EY744436

Overview
NameEY744436
Unique NameEY744436
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1042
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744436 vs. ExPASy Swiss-Prot
Match: U5S1_PONAB (116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.779e-15
Identity = 46/119 (38.66%), Postives = 65/119 (54.62%), Query Frame = 1
Query:    1 QAPEHALGGISSVLNQKRGPVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMTSDPL-----------EPATQ-AAQLVADIRNRKGLNAAMTPLSAIDD 321
            QAP   +  + +VL ++RG V ++   PG+PLY IKA++P I+SFGF   LR  T GQAF   VF HW ++  DPL           +PA   A + +   R RKGL+  ++     DD
Sbjct:  837 QAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDD 955          
BLAST of EY744436 vs. ExPASy Swiss-Prot
Match: U5S1_MOUSE (116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.779e-15
Identity = 46/119 (38.66%), Postives = 65/119 (54.62%), Query Frame = 1
Query:    1 QAPEHALGGISSVLNQKRGPVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMTSDPL-----------EPATQ-AAQLVADIRNRKGLNAAMTPLSAIDD 321
            QAP   +  + +VL ++RG V ++   PG+PLY IKA++P I+SFGF   LR  T GQAF   VF HW ++  DPL           +PA   A + +   R RKGL+  ++     DD
Sbjct:  836 QAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDD 954          
BLAST of EY744436 vs. ExPASy Swiss-Prot
Match: U5S1_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.779e-15
Identity = 46/119 (38.66%), Postives = 65/119 (54.62%), Query Frame = 1
Query:    1 QAPEHALGGISSVLNQKRGPVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMTSDPL-----------EPATQ-AAQLVADIRNRKGLNAAMTPLSAIDD 321
            QAP   +  + +VL ++RG V ++   PG+PLY IKA++P I+SFGF   LR  T GQAF   VF HW ++  DPL           +PA   A + +   R RKGL+  ++     DD
Sbjct:  837 QAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDD 955          
BLAST of EY744436 vs. ExPASy Swiss-Prot
Match: U5S1_CHICK (116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.779e-15
Identity = 46/119 (38.66%), Postives = 65/119 (54.62%), Query Frame = 1
Query:    1 QAPEHALGGISSVLNQKRGPVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMTSDPL-----------EPATQ-AAQLVADIRNRKGLNAAMTPLSAIDD 321
            QAP   +  + +VL ++RG V ++   PG+PLY IKA++P I+SFGF   LR  T GQAF   VF HW ++  DPL           +PA   A + +   R RKGL+  ++     DD
Sbjct:  837 QAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDD 955          
BLAST of EY744436 vs. ExPASy Swiss-Prot
Match: U5S1_BOVIN (116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.779e-15
Identity = 46/119 (38.66%), Postives = 65/119 (54.62%), Query Frame = 1
Query:    1 QAPEHALGGISSVLNQKRGPVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMTSDPL-----------EPATQ-AAQLVADIRNRKGLNAAMTPLSAIDD 321
            QAP   +  + +VL ++RG V ++   PG+PLY IKA++P I+SFGF   LR  T GQAF   VF HW ++  DPL           +PA   A + +   R RKGL+  ++     DD
Sbjct:  837 QAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDD 955          
BLAST of EY744436 vs. ExPASy Swiss-Prot
Match: SN114_SCHPO (114 kDa U5 small nuclear ribonucleoprotein component homolog OS=Schizosaccharomyces pombe GN=cwf10 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 5.241e-14
Identity = 45/106 (42.45%), Postives = 60/106 (56.60%), Query Frame = 1
Query:    4 APEHALGGISSVLNQKRGPVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMTSD---------PLEPA---TQAAQLVADIRNRKGL 285
            AP  +L  I  +L ++RG V +++ RPG+PLY ++A +PVI+S GF   LR  T GQA  Q VFDHW ++  D         PLEPA     A   +   R RKGL
Sbjct:  851 APADSLPIIYDLLTRRRGHVLQDIPRPGSPLYLVRALIPVIDSCGFETDLRVHTQGQAMCQMVFDHWQVVPGDPLDKSIKPKPLEPARGSDLARDFLIKTRRRKGL 956          
BLAST of EY744436 vs. ExPASy Swiss-Prot
Match: ETUD1_MOUSE (Elongation factor Tu GTP-binding domain-containing protein 1 OS=Mus musculus GN=Eftud1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.992e-13
Identity = 42/110 (38.18%), Postives = 60/110 (54.55%), Query Frame = 1
Query:    4 APEHALGGISSVLNQKRGPVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMTSDPL----------------EPATQAAQLVADIRNRKGL 285
            A    LG + +VL+++ G V +E  + GT ++ IKA LPV ESFGF+  +R  TSG A PQ VF HW+++ SDP                 +   QA + +  +R RKGL
Sbjct:  998 ATSDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEVIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGL 1107          
BLAST of EY744436 vs. ExPASy Swiss-Prot
Match: ETUD1_HUMAN (Elongation factor Tu GTP-binding domain-containing protein 1 OS=Homo sapiens GN=EFTUD1 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 3.397e-13
Identity = 41/105 (39.05%), Postives = 59/105 (56.19%), Query Frame = 1
Query:   19 LGGISSVLNQKRGPVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMTSDPL----------------EPATQAAQLVADIRNRKGL 285
            LG + +VL+++ G V +E  + GT ++ IKA LPV ESFGF+  +R  TSG A PQ VF HW+++ SDP                 +   QA + +  +R RKGL
Sbjct:  996 LGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGL 1100          
BLAST of EY744436 vs. ExPASy Swiss-Prot
Match: RIA1_SCHPO (Ribosome assembly protein 1 OS=Schizosaccharomyces pombe GN=ria1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.093e-11
Identity = 38/111 (34.23%), Postives = 62/111 (55.86%), Query Frame = 1
Query:    1 QAPEHALGGISSVLNQKRGPVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMTSDPL-EPATQ---------------AAQLVADIRNRKGL 285
            QA    LG +  V++++RG V +E  + GTP + +KA +PV+ESFGF+  +   TSG A+PQ +F  ++M+  +P   P T+               A + + ++R RKGL
Sbjct:  872 QATSEVLGRVYGVVSKRRGRVIDEEMKEGTPFFIVKALIPVVESFGFAVEILKRTSGAAYPQLIFHGFEMLDENPFWVPTTEEELEDLGELADRENIAKRYMLNVRKRKGL 982          
The following BLAST results are available for this feature:
BLAST of EY744436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
U5S1_PONAB2.779e-1538.66116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_MOUSE2.779e-1538.66116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_HUMAN2.779e-1538.66116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_CHICK2.779e-1538.66116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_BOVIN2.779e-1538.66116 kDa U5 small nuclear ribonucleoprotein compone... [more]
SN114_SCHPO5.241e-1442.45114 kDa U5 small nuclear ribonucleoprotein compone... [more]
ETUD1_MOUSE1.992e-1338.18Elongation factor Tu GTP-binding domain-containing... [more]
ETUD1_HUMAN3.397e-1339.05Elongation factor Tu GTP-binding domain-containing... [more]
RIA1_SCHPO1.093e-1134.23Ribosome assembly protein 1 OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-008-F02-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744436 ID=EY744436; Name=EY744436; organism=Citrus sinensis; type=EST; length=1042bp
CAGGCTCCCGAGCACGCCCTTGGTGGTATTTCCAGTGTTCTCAATCAGAA
ACGTGGTCCCGTGTTCGAGGAAATGCAGAGACCTGGTACCCCCCTTTACA
ACATCAAGGCTTACCTTCCCGTCATCGAGTCCTTTGGATTCTCAGGCACT
TTGAGGGCTGCAACGTCAGGACAGGCCTTCCCACAATGTGTGTTTGATCA
CTGGGACATGATGACATCCGATCCACTGGAGCCTGCCACACAGGCTGCAC
AGCTTGTTGCTGATATCAGGAACAGGAAGGGCTTGAACGCAGCAATGACA
CCACTATCAGCAATTGACGACAAACCGTAAACATTTCGTCTTGACATCAG
CGTCAGACACTTGCCCCACCATTGCTTGCGGAAACGACGGAGCAGGCAAC
CACATGACACCGGCTGAGCCGAGTAACAGGACGAACCTCCAAATCAACTC
ACATGATCGAACCCAACAGGCGAAAATAGTCCCCCAAACTCCAGACACGA
CCCACGACTATACTGCACTGATGCTGCAGACACCAGCCATACACCACAAA
CCGGACCCACCACAAGCCTCATATCAACCTCCAAAACACCCACCACCACA
CACAAAACAATGATAACAAAAAGACGAAAAGATAAAAAACACCGAGAACA
CAAAAACAACCACACACACACCAGCACACGAAGCGCCAGTGGAGAGAAGC
TGCGCGAACAGCCACTGCGAGGCCCCAACATCAATTCAACACACCACGAC
CAACAAACACAGCCAACCCGCACCGCCCGGAACGCCCCAACACAAAACAC
CCACAACATACGATGCAAACGCCCCACACCACTCCTCAGTCAAGATAACC
GAGCAACACAGCACACAACAACACACAGAACGCCGAGACCCACAAAGAAC
ACAAAACACACCCCGCCCNGCCCCCTCACCGCCAGCAAGACCACAACTCT
TAAACAACAAAAGCATGAAAAAAGAACAGCAACACAAAGATACAAGAACC
CACACACCACCAACACAACAAAAAAACAAAACAGAAGCAAAG
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