EY744436
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY744436 vs. ExPASy Swiss-Prot
Match: U5S1_PONAB (116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 2.779e-15 Identity = 46/119 (38.66%), Postives = 65/119 (54.62%), Query Frame = 1 Query: 1 QAPEHALGGISSVLNQKRGPVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMTSDPL-----------EPATQ-AAQLVADIRNRKGLNAAMTPLSAIDD 321 QAP + + +VL ++RG V ++ PG+PLY IKA++P I+SFGF LR T GQAF VF HW ++ DPL +PA A + + R RKGL+ ++ DD Sbjct: 837 QAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDD 955
BLAST of EY744436 vs. ExPASy Swiss-Prot
Match: U5S1_MOUSE (116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 2.779e-15 Identity = 46/119 (38.66%), Postives = 65/119 (54.62%), Query Frame = 1 Query: 1 QAPEHALGGISSVLNQKRGPVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMTSDPL-----------EPATQ-AAQLVADIRNRKGLNAAMTPLSAIDD 321 QAP + + +VL ++RG V ++ PG+PLY IKA++P I+SFGF LR T GQAF VF HW ++ DPL +PA A + + R RKGL+ ++ DD Sbjct: 836 QAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDD 954
BLAST of EY744436 vs. ExPASy Swiss-Prot
Match: U5S1_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 2.779e-15 Identity = 46/119 (38.66%), Postives = 65/119 (54.62%), Query Frame = 1 Query: 1 QAPEHALGGISSVLNQKRGPVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMTSDPL-----------EPATQ-AAQLVADIRNRKGLNAAMTPLSAIDD 321 QAP + + +VL ++RG V ++ PG+PLY IKA++P I+SFGF LR T GQAF VF HW ++ DPL +PA A + + R RKGL+ ++ DD Sbjct: 837 QAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDD 955
BLAST of EY744436 vs. ExPASy Swiss-Prot
Match: U5S1_CHICK (116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 2.779e-15 Identity = 46/119 (38.66%), Postives = 65/119 (54.62%), Query Frame = 1 Query: 1 QAPEHALGGISSVLNQKRGPVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMTSDPL-----------EPATQ-AAQLVADIRNRKGLNAAMTPLSAIDD 321 QAP + + +VL ++RG V ++ PG+PLY IKA++P I+SFGF LR T GQAF VF HW ++ DPL +PA A + + R RKGL+ ++ DD Sbjct: 837 QAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDD 955
BLAST of EY744436 vs. ExPASy Swiss-Prot
Match: U5S1_BOVIN (116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 2.779e-15 Identity = 46/119 (38.66%), Postives = 65/119 (54.62%), Query Frame = 1 Query: 1 QAPEHALGGISSVLNQKRGPVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMTSDPL-----------EPATQ-AAQLVADIRNRKGLNAAMTPLSAIDD 321 QAP + + +VL ++RG V ++ PG+PLY IKA++P I+SFGF LR T GQAF VF HW ++ DPL +PA A + + R RKGL+ ++ DD Sbjct: 837 QAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDD 955
BLAST of EY744436 vs. ExPASy Swiss-Prot
Match: SN114_SCHPO (114 kDa U5 small nuclear ribonucleoprotein component homolog OS=Schizosaccharomyces pombe GN=cwf10 PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 5.241e-14 Identity = 45/106 (42.45%), Postives = 60/106 (56.60%), Query Frame = 1 Query: 4 APEHALGGISSVLNQKRGPVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMTSD---------PLEPA---TQAAQLVADIRNRKGL 285 AP +L I +L ++RG V +++ RPG+PLY ++A +PVI+S GF LR T GQA Q VFDHW ++ D PLEPA A + R RKGL Sbjct: 851 APADSLPIIYDLLTRRRGHVLQDIPRPGSPLYLVRALIPVIDSCGFETDLRVHTQGQAMCQMVFDHWQVVPGDPLDKSIKPKPLEPARGSDLARDFLIKTRRRKGL 956
BLAST of EY744436 vs. ExPASy Swiss-Prot
Match: ETUD1_MOUSE (Elongation factor Tu GTP-binding domain-containing protein 1 OS=Mus musculus GN=Eftud1 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.992e-13 Identity = 42/110 (38.18%), Postives = 60/110 (54.55%), Query Frame = 1 Query: 4 APEHALGGISSVLNQKRGPVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMTSDPL----------------EPATQAAQLVADIRNRKGL 285 A LG + +VL+++ G V +E + GT ++ IKA LPV ESFGF+ +R TSG A PQ VF HW+++ SDP + QA + + +R RKGL Sbjct: 998 ATSDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEVIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGL 1107
BLAST of EY744436 vs. ExPASy Swiss-Prot
Match: ETUD1_HUMAN (Elongation factor Tu GTP-binding domain-containing protein 1 OS=Homo sapiens GN=EFTUD1 PE=1 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 3.397e-13 Identity = 41/105 (39.05%), Postives = 59/105 (56.19%), Query Frame = 1 Query: 19 LGGISSVLNQKRGPVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMTSDPL----------------EPATQAAQLVADIRNRKGL 285 LG + +VL+++ G V +E + GT ++ IKA LPV ESFGF+ +R TSG A PQ VF HW+++ SDP + QA + + +R RKGL Sbjct: 996 LGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGL 1100
BLAST of EY744436 vs. ExPASy Swiss-Prot
Match: RIA1_SCHPO (Ribosome assembly protein 1 OS=Schizosaccharomyces pombe GN=ria1 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.093e-11 Identity = 38/111 (34.23%), Postives = 62/111 (55.86%), Query Frame = 1 Query: 1 QAPEHALGGISSVLNQKRGPVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMTSDPL-EPATQ---------------AAQLVADIRNRKGL 285 QA LG + V++++RG V +E + GTP + +KA +PV+ESFGF+ + TSG A+PQ +F ++M+ +P P T+ A + + ++R RKGL Sbjct: 872 QATSEVLGRVYGVVSKRRGRVIDEEMKEGTPFFIVKALIPVVESFGFAVEILKRTSGAAYPQLIFHGFEMLDENPFWVPTTEEELEDLGELADRENIAKRYMLNVRKRKGL 982 The following BLAST results are available for this feature:
BLAST of EY744436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 39
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >EY744436 ID=EY744436; Name=EY744436; organism=Citrus sinensis; type=EST; length=1042bpback to top |