EY744421
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY744421 vs. ExPASy Swiss-Prot
Match: RRP3_VANPO (ATP-dependent rRNA helicase RRP3 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=RRP3 PE=3 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 7.081e-11 Identity = 33/100 (33.00%), Postives = 53/100 (53.00%), Query Frame = 1 Query: 211 EQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQ 510 + P EE G + + E + E +F+++DL L + + KPTP+Q +IP ++ G D++ AQTGSGKTAAF PI++ + +Q Sbjct: 53 DDPSESEEEEGSDSEDVEVSKDKQEEEEEGETFESFSDLDLVPELIEACKNLNFAKPTPIQARSIPPALQGHDIIGLAQTGSGKTAAFAIPILNRLWHDQ 152 HSP 2 Score: 24.2534 bits (51), Expect = 7.081e-11 Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 3 Query: 555 ALILAPTRELSSQI 596 A ILAPTREL+ QI Sbjct: 157 ACILAPTRELAQQI 170
BLAST of EY744421 vs. ExPASy Swiss-Prot
Match: RH21_ORYSJ (DEAD-box ATP-dependent RNA helicase 21 OS=Oryza sativa subsp. japonica GN=Os03g0708600 PE=2 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 9.088e-11 Identity = 31/81 (38.27%), Postives = 48/81 (59.26%), Query Frame = 1 Query: 262 EDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMR 504 ED + G VP + ++E LG L + + Y +P+P+Q +IP+ + RD++ A+TGSGKTAAF P++S I R Sbjct: 299 EDFNISYKGSKVPRPMRKWSESKLGTELLRAVEKAGYKEPSPIQMASIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITR 379 HSP 2 Score: 23.8682 bits (50), Expect = 9.088e-11 Identity = 9/14 (64.29%), Postives = 13/14 (92.86%), Query Frame = 3 Query: 555 ALILAPTRELSSQI 596 A+++APTREL+ QI Sbjct: 394 AVVMAPTRELAQQI 407
BLAST of EY744421 vs. ExPASy Swiss-Prot
Match: DDX52_RAT (Probable ATP-dependent RNA helicase DDX52 OS=Rattus norvegicus GN=Ddx52 PE=2 SV=1) HSP 1 Score: 59.6918 bits (143), Expect = 9.143e-11 Identity = 30/76 (39.47%), Postives = 44/76 (57.89%), Query Frame = 1 Query: 274 VETSGENVPPAVNTFAEID----LGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPII 489 + G ++P + TF ++D + L NI + PTP+Q AIP+ + GR+L+A A TGSGKT AF PI+ Sbjct: 150 IHVQGTDLPDPIATFQQLDQEYKISPRLLQNILDAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPIL 225 HSP 2 Score: 28.4906 bits (62), Expect = 9.143e-11 Identity = 11/15 (73.33%), Postives = 15/15 (100.00%), Query Frame = 3 Query: 555 ALILAPTRELSSQIH 599 AL+++PTREL+SQIH Sbjct: 238 ALVISPTRELASQIH 252 The following BLAST results are available for this feature:
BLAST of EY744421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 133
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >EY744421 ID=EY744421; Name=EY744421; organism=Citrus sinensis; type=EST; length=996bpback to top |