EY744421

Overview
NameEY744421
Unique NameEY744421
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length996
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744421 vs. ExPASy Swiss-Prot
Match: RRP3_VANPO (ATP-dependent rRNA helicase RRP3 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=RRP3 PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 7.081e-11
Identity = 33/100 (33.00%), Postives = 53/100 (53.00%), Query Frame = 1
Query:  211 EQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQ 510
            + P   EE  G + +  E    +   E       +F+++DL   L    +   + KPTP+Q  +IP ++ G D++  AQTGSGKTAAF  PI++ +  +Q
Sbjct:   53 DDPSESEEEEGSDSEDVEVSKDKQEEEEEGETFESFSDLDLVPELIEACKNLNFAKPTPIQARSIPPALQGHDIIGLAQTGSGKTAAFAIPILNRLWHDQ 152          

HSP 2 Score: 24.2534 bits (51), Expect = 7.081e-11
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 3
Query:  555 ALILAPTRELSSQI 596
            A ILAPTREL+ QI
Sbjct:  157 ACILAPTRELAQQI 170          
BLAST of EY744421 vs. ExPASy Swiss-Prot
Match: RH21_ORYSJ (DEAD-box ATP-dependent RNA helicase 21 OS=Oryza sativa subsp. japonica GN=Os03g0708600 PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 9.088e-11
Identity = 31/81 (38.27%), Postives = 48/81 (59.26%), Query Frame = 1
Query:  262 EDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMR 504
            ED  +   G  VP  +  ++E  LG  L   + +  Y +P+P+Q  +IP+ +  RD++  A+TGSGKTAAF  P++S I R
Sbjct:  299 EDFNISYKGSKVPRPMRKWSESKLGTELLRAVEKAGYKEPSPIQMASIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITR 379          

HSP 2 Score: 23.8682 bits (50), Expect = 9.088e-11
Identity = 9/14 (64.29%), Postives = 13/14 (92.86%), Query Frame = 3
Query:  555 ALILAPTRELSSQI 596
            A+++APTREL+ QI
Sbjct:  394 AVVMAPTRELAQQI 407          
BLAST of EY744421 vs. ExPASy Swiss-Prot
Match: DDX52_RAT (Probable ATP-dependent RNA helicase DDX52 OS=Rattus norvegicus GN=Ddx52 PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 9.143e-11
Identity = 30/76 (39.47%), Postives = 44/76 (57.89%), Query Frame = 1
Query:  274 VETSGENVPPAVNTFAEID----LGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPII 489
            +   G ++P  + TF ++D    +   L  NI    +  PTP+Q  AIP+ + GR+L+A A TGSGKT AF  PI+
Sbjct:  150 IHVQGTDLPDPIATFQQLDQEYKISPRLLQNILDAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPIL 225          

HSP 2 Score: 28.4906 bits (62), Expect = 9.143e-11
Identity = 11/15 (73.33%), Postives = 15/15 (100.00%), Query Frame = 3
Query:  555 ALILAPTRELSSQIH 599
            AL+++PTREL+SQIH
Sbjct:  238 ALVISPTRELASQIH 252          
The following BLAST results are available for this feature:
BLAST of EY744421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
RRP3_VANPO7.081e-1133.00ATP-dependent rRNA helicase RRP3 OS=Vanderwaltozym... [more]
RH21_ORYSJ9.088e-1138.27DEAD-box ATP-dependent RNA helicase 21 OS=Oryza sa... [more]
DDX52_RAT9.143e-1139.47Probable ATP-dependent RNA helicase DDX52 OS=Rattu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-008-D10-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744421 ID=EY744421; Name=EY744421; organism=Citrus sinensis; type=EST; length=996bp
CCACCAACCTCTTCTGAACCTCCTGCTTCGTCACGAGAATCTACTGAACC
TGCCAGTGGCCCCGGCTGGGGCAGTGGTTCGAGGCCCGATTTTGGGCGTG
GTCAGGGTTACGGCTCTGGTGGTAGAAGTGGCGGTGGTTGGAATAATAGA
AGTGGGGGTTGGGACCGAAGGGAACGTGAAGTGAACCCGTTTGGTGATGA
TGTTGGTGCAGAGCAGCCGGTTGCTGAAGAAGAAAACACGGGTATTAATT
TTGATGCTTATGAGGATATTCCAGTGGAGACAAGTGGAGAAAATGTGCCA
CCGGCAGTTAATACATTTGCAGAAATTGATTTGGGGGAAGCTTTGAATCT
TAATATTAGGAGGTGCAAGTATGTCAAACCGACGCCTGTTCAGCGTCATG
CGATTCCTATATCGATTGGTGGGCGAGATTTAATGGCCTGTGCTCAGACA
GGGTCGGGGAAGACAGCTGCCTTTTGTTTTCCAATTATTAGTGGGATTAT
GCGTGAGCAGTACGTACAGAGACCACGTGGATCGCGGACTGTTTATCCCT
CCTGGCTCTTATTCTTGCCCCCACAAGAGAACTCTCGTCTCAGATCCATG
TTTGAAGCCCCAGAAATTTTCCTAATCCAACTGGGGTCAGGGGGGGGGTT
GCTTTCCGAAGGAACCACCATTCAACCCACCATTTGCGAAAACTTTTAAA
AAAAGGGGTTGAATATTCCTTTGGCCAACCCCCGCGAAAAATGGGTTTGA
TTCGCGTTGAAAAAACCTAAAATTTCTCTTTGCAAAAAGATTAGAATCCT
TTACCGCTTCCAATGAAGGGCAGACGCGGAGGCTGGATATTGGGGGTTTT
TGGCCCCCCGCAACGCCAAACAATATTTGCTGCCCCACCAACGGGTCTTA
TGCCCTCCCCCCCACCTGTGGGTTACAAACAAAATAACAACGGGCTCTTT
TCTTCCGGGCTGCCCCACCTTCCTCCCTCACAAAAAAACAATACTA
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