EY744421

Overview
NameEY744421
Unique NameEY744421
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length996
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744421 vs. ExPASy Swiss-Prot
Match: GLH2_CAEEL (ATP-dependent RNA helicase glh-2 OS=Caenorhabditis elegans GN=glh-2 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.206e-16
Identity = 43/116 (37.07%), Postives = 67/116 (57.76%), Query Frame = 1
Query:  241 GINFDAYEDIPVETSGENVPPAVNT---FAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPSWLLFLPPQE 579
            G+ F+ + D  V+ + +  P  V T   F+E +LGE +  N+    Y K TP+Q++ +P+   G D+MACAQTGSGKTAAF  PI++ ++ E  +    G    YP  ++  P +E
Sbjct:  526 GLMFNKFFDAEVKITSDKKPVGVKTCKTFSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMARLIDENDL-NTAGEGGCYPRCIILTPTRE 640          

HSP 2 Score: 23.0978 bits (48), Expect = 3.206e-16
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3
Query:  558 LILAPTRELSSQIH 599
            +IL PTREL+ QI+
Sbjct:  633 IILTPTRELTDQIY 646          
BLAST of EY744421 vs. ExPASy Swiss-Prot
Match: RH24_ORYSJ (DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa subsp. japonica GN=Os03g0308500 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.406e-15
Identity = 41/118 (34.75%), Postives = 62/118 (52.54%), Query Frame = 1
Query:  178 EVNPFGDDVGAEQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRG 531
            E  PF  D   E+P     +     D  + + +  SG +VP  + +FA+      L   I +  Y KPT +Q  A+PI + GRD++  A+TGSGKTAAF  P+I  IM +  +++  G
Sbjct:  175 EYEPFNKDFYEEKPSVSGMSEQEVADYMKSLAIRVSGFDVPRPIKSFADCGFPVQLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELEKEEG 292          

HSP 2 Score: 29.6462 bits (65), Expect = 3.406e-15
Identity = 22/70 (31.43%), Postives = 35/70 (50.00%), Query Frame = 3
Query:  552 LALILAPTRELSSQIHV*SPRNFPNPTGVRGGVAFRRNHHSTHHLRKLLKKGVEYSFGQPPRKMGLIRVE 761
            + ++ APTREL+ QI++   + F  P  +R  VA      S     K LK G E     P R + L++++
Sbjct:  294 IGVVCAPTRELAHQIYL-EAKKFAKPYNLR--VAAVYGGVSKFDQFKELKAGCEIVIATPGRLIDLLKMK 360          
BLAST of EY744421 vs. ExPASy Swiss-Prot
Match: GLH1_CAEEL (ATP-dependent RNA helicase glh-1 OS=Caenorhabditis elegans GN=glh-1 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 1.261e-14
Identity = 49/132 (37.12%), Postives = 75/132 (56.82%), Query Frame = 1
Query:  196 DDVGAEQPVAEEENTGINFDAYEDIPVE-TSGEN---VPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPSWLLFLPPQE 579
            +DV   Q ++E    G+ F+ + D  V+ TS E    + P   TFAE +L E +  N+    Y K TP+Q++A+P+   G D+MACAQTGSGKTAAF  PI++ ++ +  +    G    YP  ++  P +E
Sbjct:  304 EDVFNMQKISE----GLMFNKFFDAEVKLTSSEKTVGIKPC-KTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIMTRLIDDNNL-NTAGEGGCYPRCIILTPTRE 429          

HSP 2 Score: 23.0978 bits (48), Expect = 1.261e-14
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3
Query:  558 LILAPTRELSSQIH 599
            +IL PTREL+ QI+
Sbjct:  422 IILTPTRELADQIY 435          
BLAST of EY744421 vs. ExPASy Swiss-Prot
Match: GLH3_CAEEL (ATP-dependent RNA helicase glh-3 OS=Caenorhabditis elegans GN=glh-3 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.263e-14
Identity = 39/118 (33.05%), Postives = 67/118 (56.78%), Query Frame = 1
Query:  235 NTGINFDAYEDIPVETSGENVPPAVN---TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPSWLLFLPPQE 579
            N G  FD + D  V+      P  +    +F++ D+ +++  N+ R  Y + TP+Q++ +P+   G+D++ACAQTGSGKTAAF  PI+S ++ E+ +         YP  ++  P +E
Sbjct:  270 NAGDFFDKFFDASVQLVSRGQPVTIQPCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLPIMSRLILEKDLNY-GAEGGCYPRCIILTPTRE 386          

HSP 2 Score: 23.0978 bits (48), Expect = 1.263e-14
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3
Query:  558 LILAPTRELSSQIH 599
            +IL PTREL+ QI+
Sbjct:  379 IILTPTRELADQIY 392          
BLAST of EY744421 vs. ExPASy Swiss-Prot
Match: RH24_ARATH (DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana GN=RH24 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.639e-14
Identity = 40/114 (35.09%), Postives = 63/114 (55.26%), Query Frame = 1
Query:  190 FGDDVGAEQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRG 531
            F +++ +   + E+E T    D  + + +  SG +V   V TF +      +   I++  Y KPT +Q  A+PI + GRD++  A+TGSGKTAAF  P+I  IM +  +QR  G
Sbjct:  192 FYEELESISGMTEQETT----DYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEG 301          

HSP 2 Score: 30.8018 bits (68), Expect = 1.639e-14
Identity = 21/70 (30.00%), Postives = 34/70 (48.57%), Query Frame = 3
Query:  552 LALILAPTRELSSQIHV*SPRNFPNPTGVRGGVAFRRNHHSTHHLRKLLKKGVEYSFGQPPRKMGLIRVE 761
            + +I APTREL+ QI +   + F    G+R    +     S H   K LK G E     P R + +++++
Sbjct:  303 IGVICAPTRELAHQIFL-EAKKFSKAYGLRVSAVY--GGMSKHEQFKELKAGCEIVVATPGRLIDMLKMK 369          
BLAST of EY744421 vs. ExPASy Swiss-Prot
Match: PRP28_ASPNC (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=prp28 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.762e-14
Identity = 39/106 (36.79%), Postives = 58/106 (54.72%), Query Frame = 1
Query:  262 EDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPSWLLFLPPQE 579
            ED  + T G +VP  + ++ E +L + L   I R  Y +PTP+QR AIPI++  RDL+  A TGSGKTAAF  P++  I     +      +   P  ++  P +E
Sbjct:  356 EDFNISTKGGSVPNPMRSWDESNLPKRLMELINRVGYKEPTPIQRAAIPIAMQNRDLIGVAVTGSGKTAAFLLPLLCYIAELPRIDEFEWRKADGPYAIVLAPTRE 461          

HSP 2 Score: 31.187 bits (69), Expect = 2.762e-14
Identity = 22/66 (33.33%), Postives = 29/66 (43.94%), Query Frame = 3
Query:  555 ALILAPTRELSSQIHV*SPRNFPNPTGVRGGVAFRRNHHSTHHLRKLLKKGVEYSFGQPPRKMGLI 752
            A++LAPTREL+ QI +   + F  P G    V      HS       L+ G E     P R +  I
Sbjct:  453 AIVLAPTRELAQQIEI-EAKKFTGPLGF--NVVSIVGGHSLEEQAYSLRDGAEIIIATPGRLVDCI 515          
BLAST of EY744421 vs. ExPASy Swiss-Prot
Match: PRP28_EMENI (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Emericella nidulans GN=prp28 PE=3 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 7.871e-14
Identity = 38/106 (35.85%), Postives = 57/106 (53.77%), Query Frame = 1
Query:  262 EDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPSWLLFLPPQE 579
            ED  + T G +VP  + ++ E  L + L   + R  Y +PTP+QR AIPI++  RDL+  A TGSGKTAAF  P++  I     +      +   P  ++  P +E
Sbjct:  330 EDFNIATKGGSVPNPMRSWDESGLPKRLLELVDRVGYKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLLCYIAELPRIDEFEWRKNDGPYAIVLAPTRE 435          

HSP 2 Score: 32.3426 bits (72), Expect = 7.871e-14
Identity = 23/71 (32.39%), Postives = 33/71 (46.48%), Query Frame = 3
Query:  555 ALILAPTRELSSQIHV*SPRNFPNPTG-----VRGGVAFRRNHHSTHHLRKLLKKGVEYSFGQPPRKMGLI 752
            A++LAPTREL+ QI +   + F  P G     + GG +F    +S       L+ G E     P R +  I
Sbjct:  427 AIVLAPTRELAQQIEI-EAKKFTEPLGFNVVSIVGGHSFEEQAYS-------LRNGAEIIIATPGRLVDCI 489          
BLAST of EY744421 vs. ExPASy Swiss-Prot
Match: PRP28_NEOFI (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=prp28 PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.327e-13
Identity = 32/76 (42.11%), Postives = 48/76 (63.16%), Query Frame = 1
Query:  262 EDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPII 489
            ED  + T G +VP  + ++ E  L + L   + +  Y +PTP+QR AIPI++  RDL+  A TGSGKTA+F  P++
Sbjct:  348 EDFNISTKGGSVPNPMRSWEESGLPKRLLELVDQVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLL 423          

HSP 2 Score: 33.4982 bits (75), Expect = 1.327e-13
Identity = 24/71 (33.80%), Postives = 33/71 (46.48%), Query Frame = 3
Query:  555 ALILAPTRELSSQIHV*SPRNFPNPTG-----VRGGVAFRRNHHSTHHLRKLLKKGVEYSFGQPPRKMGLI 752
            A++LAPTREL+ QI +   R F  P G     + GG +F    +S       L+ G E     P R +  I
Sbjct:  445 AIVLAPTRELAQQIEI-EARKFTQPLGFNVVSIVGGHSFEEQAYS-------LRNGAEIIIATPGRLVDCI 507          
BLAST of EY744421 vs. ExPASy Swiss-Prot
Match: PRP28_ASPFU (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus fumigatus GN=prp28 PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.327e-13
Identity = 32/76 (42.11%), Postives = 48/76 (63.16%), Query Frame = 1
Query:  262 EDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPII 489
            ED  + T G +VP  + ++ E  L + L   + +  Y +PTP+QR AIPI++  RDL+  A TGSGKTA+F  P++
Sbjct:  348 EDFNISTKGGSVPNPMRSWEESGLPKRLLELVDQVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLL 423          

HSP 2 Score: 33.4982 bits (75), Expect = 1.327e-13
Identity = 24/71 (33.80%), Postives = 33/71 (46.48%), Query Frame = 3
Query:  555 ALILAPTRELSSQIHV*SPRNFPNPTG-----VRGGVAFRRNHHSTHHLRKLLKKGVEYSFGQPPRKMGLI 752
            A++LAPTREL+ QI +   R F  P G     + GG +F    +S       L+ G E     P R +  I
Sbjct:  445 AIVLAPTRELAQQIEI-EARKFTQPLGFNVVSIVGGHSFEEQAYS-------LRNGAEIIIATPGRLVDCI 507          
BLAST of EY744421 vs. ExPASy Swiss-Prot
Match: DDX42_XENLA (ATP-dependent RNA helicase DDX42 OS=Xenopus laevis GN=ddx42 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.717e-13
Identity = 40/120 (33.33%), Postives = 62/120 (51.67%), Query Frame = 1
Query:  172 EREVNPFGDDVGAEQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRG 531
            E E  PF  +   E      +      +    + +  SG   P   ++FA     E L   IR+ +Y +PTP+Q   IP+++ GRD++  A+TGSGKTAAF +PI+  IM ++ +Q   G
Sbjct:  204 EIEYPPFEKNFYEEHEAITSQTPQQITELRHKLNLRVSGAAPPRLCSSFAHFGFDEQLLHQIRKSEYTQPTPIQCQGIPVALSGRDMIGIAKTGSGKTAAFIWPILVHIMDQKELQPADG 323          

HSP 2 Score: 25.409 bits (54), Expect = 1.717e-13
Identity = 10/16 (62.50%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  552 LALILAPTRELSSQIH 599
            +A+I+ PTREL  QIH
Sbjct:  325 IAVIVCPTRELCQQIH 340          
The following BLAST results are available for this feature:
BLAST of EY744421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
GLH2_CAEEL3.206e-1637.07ATP-dependent RNA helicase glh-2 OS=Caenorhabditis... [more]
RH24_ORYSJ3.406e-1534.75DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sa... [more]
GLH1_CAEEL1.261e-1437.12ATP-dependent RNA helicase glh-1 OS=Caenorhabditis... [more]
GLH3_CAEEL1.263e-1433.05ATP-dependent RNA helicase glh-3 OS=Caenorhabditis... [more]
RH24_ARATH1.639e-1435.09DEAD-box ATP-dependent RNA helicase 24 OS=Arabidop... [more]
PRP28_ASPNC2.762e-1436.79Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]
PRP28_EMENI7.871e-1435.85Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]
PRP28_NEOFI1.327e-1342.11Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]
PRP28_ASPFU1.327e-1342.11Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]
DDX42_XENLA1.717e-1333.33ATP-dependent RNA helicase DDX42 OS=Xenopus laevis... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-008-D10-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744421 ID=EY744421; Name=EY744421; organism=Citrus sinensis; type=EST; length=996bp
CCACCAACCTCTTCTGAACCTCCTGCTTCGTCACGAGAATCTACTGAACC
TGCCAGTGGCCCCGGCTGGGGCAGTGGTTCGAGGCCCGATTTTGGGCGTG
GTCAGGGTTACGGCTCTGGTGGTAGAAGTGGCGGTGGTTGGAATAATAGA
AGTGGGGGTTGGGACCGAAGGGAACGTGAAGTGAACCCGTTTGGTGATGA
TGTTGGTGCAGAGCAGCCGGTTGCTGAAGAAGAAAACACGGGTATTAATT
TTGATGCTTATGAGGATATTCCAGTGGAGACAAGTGGAGAAAATGTGCCA
CCGGCAGTTAATACATTTGCAGAAATTGATTTGGGGGAAGCTTTGAATCT
TAATATTAGGAGGTGCAAGTATGTCAAACCGACGCCTGTTCAGCGTCATG
CGATTCCTATATCGATTGGTGGGCGAGATTTAATGGCCTGTGCTCAGACA
GGGTCGGGGAAGACAGCTGCCTTTTGTTTTCCAATTATTAGTGGGATTAT
GCGTGAGCAGTACGTACAGAGACCACGTGGATCGCGGACTGTTTATCCCT
CCTGGCTCTTATTCTTGCCCCCACAAGAGAACTCTCGTCTCAGATCCATG
TTTGAAGCCCCAGAAATTTTCCTAATCCAACTGGGGTCAGGGGGGGGGTT
GCTTTCCGAAGGAACCACCATTCAACCCACCATTTGCGAAAACTTTTAAA
AAAAGGGGTTGAATATTCCTTTGGCCAACCCCCGCGAAAAATGGGTTTGA
TTCGCGTTGAAAAAACCTAAAATTTCTCTTTGCAAAAAGATTAGAATCCT
TTACCGCTTCCAATGAAGGGCAGACGCGGAGGCTGGATATTGGGGGTTTT
TGGCCCCCCGCAACGCCAAACAATATTTGCTGCCCCACCAACGGGTCTTA
TGCCCTCCCCCCCACCTGTGGGTTACAAACAAAATAACAACGGGCTCTTT
TCTTCCGGGCTGCCCCACCTTCCTCCCTCACAAAAAAACAATACTA
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