EY744421

Overview
NameEY744421
Unique NameEY744421
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length996
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744421 vs. ExPASy Swiss-Prot
Match: RRP3_NEUCR (ATP-dependent rRNA helicase rrp-3 OS=Neurospora crassa GN=rrp-3 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 3.089e-12
Identity = 35/100 (35.00%), Postives = 53/100 (53.00%), Query Frame = 1
Query:  211 EQPVAEEENTGINFDAYED---IPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIM 501
            + P   EE+T       ED   + V    E V     TF ++ + +AL     R  Y  PTP+Q  +IP+++  RD++  A+TGSGKTAAF  PI+  ++
Sbjct:   54 DAPEPAEESTPATNSTEEDSVTLDVAPEQEEVETVKKTFKDLGIVDALCEACERLGYKNPTPIQEQSIPLALQNRDIIGIAETGSGKTAAFALPILQALL 153          

HSP 2 Score: 27.7202 bits (60), Expect = 3.089e-12
Identity = 12/16 (75.00%), Postives = 15/16 (93.75%), Query Frame = 3
Query:  549 LLALILAPTRELSSQI 596
            L AL+LAPTREL++QI
Sbjct:  159 LFALVLAPTRELAAQI 174          
BLAST of EY744421 vs. ExPASy Swiss-Prot
Match: PRP28_CHAGB (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Chaetomium globosum GN=PRP28 PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 5.163e-12
Identity = 32/76 (42.11%), Postives = 46/76 (60.53%), Query Frame = 1
Query:  262 EDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPII 489
            E+  + T G  +P  + ++AE +L   L   +    Y +PTP+QR AIPI+   RDL+  A TGSGKTAAF  P++
Sbjct:  253 ENFGIATKGGAIPNPMRSWAESNLPRRLLEIVENVGYDEPTPIQRAAIPIAQQARDLIGVAVTGSGKTAAFLLPLL 328          

HSP 2 Score: 30.4166 bits (67), Expect = 5.163e-12
Identity = 24/61 (39.34%), Postives = 25/61 (40.98%), Query Frame = 3
Query:  555 ALILAPTRELSSQIHV*SPRNFPNPTGVRGGVAFRRNHHSTHHLRKLLKKGVEYSFGQPPR 737
            ALILAPTREL  QI     R F  P G    V      HS       L+ G E     P R
Sbjct:  348 ALILAPTRELVQQIET-EARKFAGPLGFT--VVSIVGGHSLEEQAFALRNGAEIIVATPGR 405          
BLAST of EY744421 vs. ExPASy Swiss-Prot
Match: DDX59_HUMAN (Probable ATP-dependent RNA helicase DDX59 OS=Homo sapiens GN=DDX59 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.181e-12
Identity = 39/106 (36.79%), Postives = 57/106 (53.77%), Query Frame = 1
Query:  262 EDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPSWLLFLPPQE 579
            + + +   G+ V   +  F    L E LN N+++  Y  PTP+Q   IP+ + GRD++A A TGSGKTAAF  P+I   + E        S+T  PS L+  P +E
Sbjct:  187 QQLGILVQGQEVTRPIIDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMRALFE--------SKT--PSALILTPTRE 282          

HSP 2 Score: 23.8682 bits (50), Expect = 5.181e-12
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 3
Query:  555 ALILAPTRELSSQI 596
            ALIL PTREL+ QI
Sbjct:  274 ALILTPTRELAIQI 287          
BLAST of EY744421 vs. ExPASy Swiss-Prot
Match: PRP28_SCLS1 (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=prp28 PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 6.677e-12
Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = 1
Query:  262 EDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPII 489
            ED  + T G  +P  + +++E  L + L   I +  Y +P+ VQR AIPI++  RDL+  A TGSGKTAAF  P++
Sbjct:  363 EDFNISTKGGAIPNPMRSWSESKLPKRLLDVINQVGYDEPSAVQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLL 438          

HSP 2 Score: 31.187 bits (69), Expect = 6.677e-12
Identity = 25/71 (35.21%), Postives = 31/71 (43.66%), Query Frame = 3
Query:  555 ALILAPTRELSSQIHV*SPRNFPNPTG-----VRGGVAFRRNHHSTHHLRKLLKKGVEYSFGQPPRKMGLI 752
            A+ILAPTREL+ QI V   + F  P G     + GG       HS       L+ G E     P R +  I
Sbjct:  458 AIILAPTRELAQQIEV-EAKKFATPLGFTCVSIVGG-------HSLEEQSYNLRNGAEIIIATPGRLVDCI 520          
BLAST of EY744421 vs. ExPASy Swiss-Prot
Match: DBP2_CRYNE (ATP-dependent RNA helicase DBP2-A OS=Cryptococcus neoformans GN=DBP2 PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 6.753e-12
Identity = 29/70 (41.43%), Postives = 44/70 (62.86%), Query Frame = 1
Query:  274 VETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFP 483
            ++  G+NVP  + TF E    + +   IRR  +  P+ +Q  A P+++ GRDL+A A+TGSGKT +FC P
Sbjct:   98 MKIQGKNVPRPITTFEEAGFPDYIMSEIRRMGFTAPSSIQCQAWPMALSGRDLVAIAETGSGKTISFCLP 167          

HSP 2 Score: 27.7202 bits (60), Expect = 6.753e-12
Identity = 23/72 (31.94%), Postives = 33/72 (45.83%), Query Frame = 3
Query:  552 LALILAPTRELSSQIHV*SPRNFPNPTGVRGGVAFRRNHHSTHHLRKLLKKGVEYSFGQPPRKMGLIRVEKT 767
            + LILAPTREL+ QI       F   + +R   A          +R  L++GVE     P R + ++   KT
Sbjct:  185 IVLILAPTRELAVQIQT-EATKFGQSSRIR-NTAIYGGAPKGPQIRD-LQRGVEICVATPGRLIDMLETGKT 253          
BLAST of EY744421 vs. ExPASy Swiss-Prot
Match: RH28_ORYSJ (DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa subsp. japonica GN=Os12g0481100 PE=2 SV=2)

HSP 1 Score: 65.0846 bits (157), Expect = 8.672e-12
Identity = 39/110 (35.45%), Postives = 53/110 (48.18%), Query Frame = 1
Query:  172 EREVNPFGDDVGAEQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIM 501
            E E    GD+  AE    EEE T       +      S E      N+F E++L   L        Y KPTP+Q   IP+++ GRD+   A TGSGKTAAF  P++  ++
Sbjct:  152 EEEEKEEGDEEAAE----EEEETDKKSGVVDPSKFFASSEGASFHANSFLELNLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERLL 257          

HSP 2 Score: 26.5646 bits (57), Expect = 8.672e-12
Identity = 10/18 (55.56%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  546 SLLALILAPTRELSSQIH 599
            ++  LIL PTREL++Q+H
Sbjct:  265 AIRVLILTPTRELAAQVH 282          
BLAST of EY744421 vs. ExPASy Swiss-Prot
Match: PRP28_BOTFB (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Botryotinia fuckeliana (strain B05.10) GN=prp28 PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 8.678e-12
Identity = 32/76 (42.11%), Postives = 46/76 (60.53%), Query Frame = 1
Query:  262 EDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPII 489
            ED  + T G  +P  +  ++E  L + L   I +  Y +P+ VQR AIPI++  RDL+  A TGSGKTAAF  P++
Sbjct:  364 EDFNISTKGGAIPNPMRNWSESKLPKRLLDVIHQVGYDEPSAVQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLL 439          

HSP 2 Score: 31.187 bits (69), Expect = 8.678e-12
Identity = 25/71 (35.21%), Postives = 31/71 (43.66%), Query Frame = 3
Query:  555 ALILAPTRELSSQIHV*SPRNFPNPTG-----VRGGVAFRRNHHSTHHLRKLLKKGVEYSFGQPPRKMGLI 752
            A+ILAPTREL+ QI V   + F  P G     + GG       HS       L+ G E     P R +  I
Sbjct:  459 AIILAPTRELAQQIEV-EAKKFATPLGFTCVSIVGG-------HSLEEQSYNLRNGAEIIIATPGRLVDCI 521          
BLAST of EY744421 vs. ExPASy Swiss-Prot
Match: PRP28_GIBZE (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Gibberella zeae GN=PRP28 PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 8.697e-12
Identity = 31/76 (40.79%), Postives = 46/76 (60.53%), Query Frame = 1
Query:  262 EDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPII 489
            ED  + T G  +P  + ++ E +L + L   +    Y  P+P+QR AIPI++  RDL+  A TGSGKTAAF  P++
Sbjct:  272 EDFGIATKGGMIPNPMRSWQESNLPQRLLNIVDDVGYKDPSPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLL 347          

HSP 2 Score: 30.4166 bits (67), Expect = 8.697e-12
Identity = 24/66 (36.36%), Postives = 27/66 (40.91%), Query Frame = 3
Query:  555 ALILAPTRELSSQIHV*SPRNFPNPTGVRGGVAFRRNHHSTHHLRKLLKKGVEYSFGQPPRKMGLI 752
            ALI+APTREL  QI     R F  P G R  V      H        L+ G E     P R +  I
Sbjct:  367 ALIMAPTRELVQQIET-EARKFAGPLGFR--VVSIVGGHQIEEQAYNLRDGAEIVVATPGRLLDCI 429          
BLAST of EY744421 vs. ExPASy Swiss-Prot
Match: DBP9_SCLS1 (ATP-dependent RNA helicase dbp9 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp9 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.738e-12
Identity = 40/105 (38.10%), Postives = 57/105 (54.29%), Query Frame = 1
Query:  265 DIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPSWLLFLPPQE 579
            D+PV T          TFA + L   L   I +  +  PT VQ  AIP+++ GRD++A A+TGSGKTAA+  PI+  I++     R   S T   S L+ +P +E
Sbjct:    9 DVPVPTEEAEAANGKATFASLGLDARLLQGIAKQNFQSPTLVQSKAIPLTLEGRDILARAKTGSGKTAAYLLPILHSILK-----RKELSPTQCTSALILVPTRE 108          

HSP 2 Score: 25.0238 bits (53), Expect = 8.738e-12
Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = 3
Query:  555 ALILAPTRELSSQIH 599
            ALIL PTREL+ Q++
Sbjct:  100 ALILVPTRELADQVY 114          
BLAST of EY744421 vs. ExPASy Swiss-Prot
Match: PRP28_PICGU (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Pichia guilliermondii GN=PRP28 PE=3 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 8.751e-12
Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 1
Query:  262 EDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIIS 492
            ED  +   G N+P  + ++ E  +   L   I +  Y +PTP+QR AIP ++G RD++  A+TGSGKT AF  P++S
Sbjct:  134 EDFSITCKGNNIPNPLRSWKESGIPTTLLNTIDQLGYKEPTPIQRAAIPTALGHRDVVGIAETGSGKTLAFLIPLLS 210          

HSP 2 Score: 25.409 bits (54), Expect = 8.751e-12
Identity = 11/16 (68.75%), Postives = 14/16 (87.50%), Query Frame = 3
Query:  549 LLALILAPTRELSSQI 596
            +L L+LAPTREL+ QI
Sbjct:  233 VLGLVLAPTRELALQI 248          
The following BLAST results are available for this feature:
BLAST of EY744421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
RRP3_NEUCR3.089e-1235.00ATP-dependent rRNA helicase rrp-3 OS=Neurospora cr... [more]
PRP28_CHAGB5.163e-1242.11Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
DDX59_HUMAN5.181e-1236.79Probable ATP-dependent RNA helicase DDX59 OS=Homo ... [more]
PRP28_SCLS16.677e-1242.11Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]
DBP2_CRYNE6.753e-1241.43ATP-dependent RNA helicase DBP2-A OS=Cryptococcus ... [more]
RH28_ORYSJ8.672e-1235.45DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sa... [more]
PRP28_BOTFB8.678e-1242.11Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]
PRP28_GIBZE8.697e-1240.79Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
DBP9_SCLS18.738e-1238.10ATP-dependent RNA helicase dbp9 OS=Sclerotinia scl... [more]
PRP28_PICGU8.751e-1240.26Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-008-D10-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744421 ID=EY744421; Name=EY744421; organism=Citrus sinensis; type=EST; length=996bp
CCACCAACCTCTTCTGAACCTCCTGCTTCGTCACGAGAATCTACTGAACC
TGCCAGTGGCCCCGGCTGGGGCAGTGGTTCGAGGCCCGATTTTGGGCGTG
GTCAGGGTTACGGCTCTGGTGGTAGAAGTGGCGGTGGTTGGAATAATAGA
AGTGGGGGTTGGGACCGAAGGGAACGTGAAGTGAACCCGTTTGGTGATGA
TGTTGGTGCAGAGCAGCCGGTTGCTGAAGAAGAAAACACGGGTATTAATT
TTGATGCTTATGAGGATATTCCAGTGGAGACAAGTGGAGAAAATGTGCCA
CCGGCAGTTAATACATTTGCAGAAATTGATTTGGGGGAAGCTTTGAATCT
TAATATTAGGAGGTGCAAGTATGTCAAACCGACGCCTGTTCAGCGTCATG
CGATTCCTATATCGATTGGTGGGCGAGATTTAATGGCCTGTGCTCAGACA
GGGTCGGGGAAGACAGCTGCCTTTTGTTTTCCAATTATTAGTGGGATTAT
GCGTGAGCAGTACGTACAGAGACCACGTGGATCGCGGACTGTTTATCCCT
CCTGGCTCTTATTCTTGCCCCCACAAGAGAACTCTCGTCTCAGATCCATG
TTTGAAGCCCCAGAAATTTTCCTAATCCAACTGGGGTCAGGGGGGGGGTT
GCTTTCCGAAGGAACCACCATTCAACCCACCATTTGCGAAAACTTTTAAA
AAAAGGGGTTGAATATTCCTTTGGCCAACCCCCGCGAAAAATGGGTTTGA
TTCGCGTTGAAAAAACCTAAAATTTCTCTTTGCAAAAAGATTAGAATCCT
TTACCGCTTCCAATGAAGGGCAGACGCGGAGGCTGGATATTGGGGGTTTT
TGGCCCCCCGCAACGCCAAACAATATTTGCTGCCCCACCAACGGGTCTTA
TGCCCTCCCCCCCACCTGTGGGTTACAAACAAAATAACAACGGGCTCTTT
TCTTCCGGGCTGCCCCACCTTCCTCCCTCACAAAAAAACAATACTA
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