EY744411

Overview
NameEY744411
Unique NameEY744411
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744411 vs. ExPASy Swiss-Prot
Match: UBC5_ARATH (Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana GN=UBC5 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.443e-17
Identity = 43/144 (29.86%), Postives = 82/144 (56.94%), Query Frame = 2
Query:  191 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAIL-TSIQSLLCDPNPNSPANSEAARMFTENKREYNREIR 616
            MS+P+++R M   K +  D    +         + ++    GP D+ ++GG +K+ ++  + YP K P+V F+++++HPN+    GS+CLD++   WSP++D+  +  T +  LL  PNP+ P N EAA +   ++  Y + ++
Sbjct:    1 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFFVEFS----GPKDSIYEGGVWKIRVELPDAYPYKSPSVGFITKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDRPTYEQRVK 140          
BLAST of EY744411 vs. ExPASy Swiss-Prot
Match: UBC12_XENTR (NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropicalis GN=ube2m PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.443e-17
Identity = 41/143 (28.67%), Postives = 79/143 (55.24%), Query Frame = 2
Query:  188 RMSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFTENKREYNREIR 616
            + ++ A+ R+ +D   L       I  +  D+  +L   ++  PD+  + GG F  + +  + YP+ PP V+  + ++HPNI  +G++CL+IL+  W P+  + +I+  +Q L  +PNP  P N EAA +   N+R + + ++
Sbjct:   25 KKASAAQLRIQKDINELNLPKTCEIEFSDHDD--LLNFKLVICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 165          
BLAST of EY744411 vs. ExPASy Swiss-Prot
Match: UBC12_XENLA (NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis GN=ube2m PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.884e-17
Identity = 41/143 (28.67%), Postives = 79/143 (55.24%), Query Frame = 2
Query:  188 RMSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFTENKREYNREIR 616
            + ++ A+ R+ +D   L       I  +  D+  +L   ++  PD+  + GG F  + +  + YP+ PP V+  + ++HPNI  +G++CL+IL+  W P+  + +I+  +Q L  +PNP  P N EAA +   N+R + + ++
Sbjct:   25 KKASAAQLRIQKDITELNLPKTCEIEFSDHDD--LLNFKLVICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 165          
BLAST of EY744411 vs. ExPASy Swiss-Prot
Match: UBC12_MOUSE (NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=Ube2m PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.461e-17
Identity = 41/143 (28.67%), Postives = 79/143 (55.24%), Query Frame = 2
Query:  188 RMSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFTENKREYNREIR 616
            + ++ A+ R+ +D   L       IS +  D+  +L   ++  PD+  +  G F  + +  + YP+ PP V+  + ++HPNI  +G++CL+IL+  W P+  + +I+  +Q L  +PNP  P N EAA +   N+R + + ++
Sbjct:   25 KKASAAQLRIQKDINELNLPKTCDISFSDPDD--LLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 165          
BLAST of EY744411 vs. ExPASy Swiss-Prot
Match: UBC12_HUMAN (NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=UBE2M PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.461e-17
Identity = 41/143 (28.67%), Postives = 79/143 (55.24%), Query Frame = 2
Query:  188 RMSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFTENKREYNREIR 616
            + ++ A+ R+ +D   L       IS +  D+  +L   ++  PD+  +  G F  + +  + YP+ PP V+  + ++HPNI  +G++CL+IL+  W P+  + +I+  +Q L  +PNP  P N EAA +   N+R + + ++
Sbjct:   25 KKASAAQLRIQKDINELNLPKTCDISFSDPDD--LLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 165          
BLAST of EY744411 vs. ExPASy Swiss-Prot
Match: UBC12_BOVIN (NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UBE2M PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.461e-17
Identity = 41/143 (28.67%), Postives = 79/143 (55.24%), Query Frame = 2
Query:  188 RMSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFTENKREYNREIR 616
            + ++ A+ R+ +D   L       IS +  D+  +L   ++  PD+  +  G F  + +  + YP+ PP V+  + ++HPNI  +G++CL+IL+  W P+  + +I+  +Q L  +PNP  P N EAA +   N+R + + ++
Sbjct:   25 KKASAAQLRIQKDINELNLPKTCDISFSDPDD--LLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 165          
BLAST of EY744411 vs. ExPASy Swiss-Prot
Match: UBCD4_DROME (Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophila melanogaster GN=UbcD4 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 4.198e-17
Identity = 49/136 (36.03%), Postives = 77/136 (56.62%), Query Frame = 2
Query:  191 MSTPARKRLMRDFK---RLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFTE 586
            M+  A  R+ R+FK   R ++     I     ++S       I GP DTP++GG F L ++  E YP  PP VRF++R++HPNI +  G+ICLDIL++ W+    +  +L S+Q+LL    P+ P ++  A  F +
Sbjct:    1 MANMAVSRIKREFKEVMRSEEIVQCSIKIELVNDSWTELRGEIAGPPDTPYEGGKFVLEIKVPETYPFNPPKVRFITRIWHPNISSVTGAICLDILKDNWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVAYQFKD 136          
BLAST of EY744411 vs. ExPASy Swiss-Prot
Match: UBC12_SCHPO (NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomyces pombe GN=ubc12 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.221e-16
Identity = 43/140 (30.71%), Postives = 81/140 (57.86%), Query Frame = 2
Query:  197 TPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFTENKREYNREIR 616
            +PA+ R+ +D   L+   P+ +S +  D   +    +   PD+  + GG FK  +Q  ++YP+ PP V+ +++++HPNI  +G++CL+IL+  W+P+ ++ +IL  +Q L   PN   P N EAA    ++ + +   +R
Sbjct:   22 SPAQIRIQKDVTDLEI--PSTMSTSWPDPIKLNVLHLEIRPDEGYYKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNLNSILVGLQFLFLSPNAEDPLNKEAAADLHKDPQGFASRVR 159          
BLAST of EY744411 vs. ExPASy Swiss-Prot
Match: UBC1_MIMIV (Probable ubiquitin-conjugating enzyme E2 L460 OS=Acanthamoeba polyphaga mimivirus GN=UBC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.595e-16
Identity = 41/114 (35.96%), Postives = 69/114 (60.53%), Query Frame = 2
Query:  278 DNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFTENKREYNREIR 616
            D +I LW   I GP+++ ++   F+L ++ + DYP   P V+F++ + H N+   G ICL+IL+   W+   ++ +I+ SI  LL  PNP  P NSE A ++  +K  Y+++IR
Sbjct:   33 DENIFLWKVNIKGPENSLYENYNFELEIELSNDYPYSSPKVKFITPIQHMNVNDKGDICLNILKKDGWNASLNIISIIWSIIVLLDQPNPEDPFNSELASLYRNDKLSYDKKIR 146          
BLAST of EY744411 vs. ExPASy Swiss-Prot
Match: UB2L6_MOUSE (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Mus musculus GN=Ube2l6 PE=2 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 1.595e-16
Identity = 40/138 (28.99%), Postives = 78/138 (56.52%), Query Frame = 2
Query:  203 ARKRLMRDFKRLQQD-PPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFTENKREYNRE 610
            A KR+ ++ + L ++ PP     +  D ++++W+ ++  PD  P+    F++ + F  +YP KPPT+RF ++++HPN+  DG +CL ++ N+ W P      +L ++  L+  PN   P   E A + T+N   + ++
Sbjct:    3 ASKRVAKELESLSKELPPYLRQLSSDDANVLVWHMLLL-PDQLPYGLKAFQVRIDFPREYPFKPPTLRFTTKIYHPNVREDGLVCLPLISNENWKPYTKPYQVLEALNVLVSKPNLEEPVRLELADLLTQNPEMFRKK 139          
The following BLAST results are available for this feature:
BLAST of EY744411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 253
Match NameE-valueIdentityDescription
UBC5_ARATH1.443e-1729.86Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis t... [more]
UBC12_XENTR1.443e-1728.67NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropical... [more]
UBC12_XENLA1.884e-1728.67NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis G... [more]
UBC12_MOUSE2.461e-1728.67NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=... [more]
UBC12_HUMAN2.461e-1728.67NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=... [more]
UBC12_BOVIN2.461e-1728.67NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UB... [more]
UBCD4_DROME4.198e-1736.03Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophi... [more]
UBC12_SCHPO1.221e-1630.71NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomy... [more]
UBC1_MIMIV1.595e-1635.96Probable ubiquitin-conjugating enzyme E2 L460 OS=A... [more]
UB2L6_MOUSE1.595e-1628.99Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-008-C11-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744411 ID=EY744411; Name=EY744411; organism=Citrus sinensis; type=EST; length=920bp
AATTGGGACCGCTGACCTGAACGACTCTCTCTCTCTCTCTCTTTTGTTTC
TCTGATCAAATTGAGTACCATGGAATTCTTTCTCTGATACCGCCTGCTTT
TCGATTGTTTCCCGAGAAAAATCTCGCTGCGATTCTGAAGCTTTTACTGC
AATCAACGCTACTTGCCGCGTCAGCTCGTAGGCAGTGAGAATGTCGACTC
CTGCAAGGAAGAGATTGATGAGGGATTTTAAGAGGTTACAACAAGATCCT
CCGGCTGGCATTAGTGGTGCTCCTCAGGACAACAGTATAATGCTTTGGAA
TGCTGTTATATTCGGGCCGGATGACACCCCATGGGATGGAGGTACGTTTA
AATTGACACTTCAGTTCACAGAGGATTATCCAAATAAGCCACCAACAGTG
CGCTTTGTTTCTCGGATGTTCCATCCAAATATTTATGCGGATGGAAGCAT
TTGCTTGGACATTCTACAAAATCAGTGGAGTCCAATTTACGATGTAGCAG
CAATACTCACGTCAATTCAGTCATTGCTTTGTGACCCAAATCCAAACTCT
CCTGCAAATTCGGAGGCCGCACGGATGTTTACCGAGAACAAGCGTGAATA
CAATAGGGAAATACGGGGAATTGGTGAGCAGAATTGGACTGCTGACTAAT
GGGGAACTTGTTGGAATGGAGGGAACTTCCAAAAAAATCCAATGGGCTGG
TCTAAATAACATTTAAAATTTCAAAGGTGGGGGGGGGGAATACTTGAACT
GGTTTAATCGGTTGTTTCCCCCTTTAAAAGGGAGGATGCTTGGCCCCCTT
ATTTGCTTAATATTTTCACCCTCTTACGGCCAATTGTAACCCCCCCCACA
CAAAACCTGGTCGCAGTCGCTATTTCCATGGCCCGTGTGCGGGCTTTAAA
CAGGACGCCAACACAAAAAA
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