EY744346

Overview
NameEY744346
Unique NameEY744346
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1035
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744346 vs. ExPASy Swiss-Prot
Match: RAB7L_HUMAN (Ras-related protein Rab-7L1 OS=Homo sapiens GN=RAB7L1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 6.770e-22
Identity = 51/126 (40.48%), Postives = 77/126 (61.11%), Query Frame = 1
Query:  154 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENXPRXVLGNKTDV 528
            R  L KV+++GD+ VGKTSL+ +Y    FS  YK+T+G DF  K +Q+ D  +  LQ+WD AGQERF S+   +YR A  CV+++DV    +F N   W+++   + +  + E  P  +L NK D+
Sbjct:    4 RDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLANKCDL 129          
BLAST of EY744346 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 6.770e-22
Identity = 49/122 (40.16%), Postives = 81/122 (66.39%), Query Frame = 1
Query:  163 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENXPRXVLGNKTDV 528
            L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    EN  + ++GNK D+
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKCDL 125          
BLAST of EY744346 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 6.770e-22
Identity = 49/122 (40.16%), Postives = 81/122 (66.39%), Query Frame = 1
Query:  163 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENXPRXVLGNKTDV 528
            L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    EN  + ++GNK D+
Sbjct:   11 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKCDL 128          
BLAST of EY744346 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 6.770e-22
Identity = 49/122 (40.16%), Postives = 81/122 (66.39%), Query Frame = 1
Query:  163 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENXPRXVLGNKTDV 528
            L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    EN  + ++GNK D+
Sbjct:   11 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKCDL 128          
BLAST of EY744346 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 6.770e-22
Identity = 49/122 (40.16%), Postives = 81/122 (66.39%), Query Frame = 1
Query:  163 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENXPRXVLGNKTDV 528
            L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    EN  + ++GNK D+
Sbjct:   11 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKCDL 128          
BLAST of EY744346 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 6.770e-22
Identity = 49/122 (40.16%), Postives = 81/122 (66.39%), Query Frame = 1
Query:  163 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENXPRXVLGNKTDV 528
            L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    EN  + ++GNK D+
Sbjct:   11 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKCDL 128          
BLAST of EY744346 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 8.842e-22
Identity = 48/122 (39.34%), Postives = 79/122 (64.75%), Query Frame = 1
Query:  163 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENXPRXVLGNKTDV 528
            L K +++GDSGVGK++L+ ++   +F+ + K+TIG +F T+ +  +++    QIWDTAGQER++++  A+YRGA   ++VYD+    SFDN+  W +E    A      N    ++GNKTD+
Sbjct:   10 LFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHAD----SNIVIMLVGNKTDL 127          
BLAST of EY744346 vs. ExPASy Swiss-Prot
Match: RAB10_DISOM (Ras-related protein Rab-10 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 8.842e-22
Identity = 51/124 (41.13%), Postives = 80/124 (64.52%), Query Frame = 1
Query:  160 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENXPRXVLGNKTDVD 531
            +L K++++GDSGVGKT ++ ++ +  F+  + +TIG DF  K V+   +   LQIWDTAGQERF ++  ++YRGA   +LVYD+   KSF+N++ W       A+    E+  R +LGNK D++
Sbjct:    8 LLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELHGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHAN----EDVERMLLGNKCDME 127          
BLAST of EY744346 vs. ExPASy Swiss-Prot
Match: RB22A_HUMAN (Ras-related protein Rab-22A OS=Homo sapiens GN=RAB22A PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.155e-21
Identity = 51/121 (42.15%), Postives = 74/121 (61.16%), Query Frame = 1
Query:  166 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENXPRXVLGNKTDV 528
            LKV +LGD+GVGK+S++ ++V   F      TIGA F+TK VQ+++ L    IWDTAGQERF++L   +YRG+   ++VYD+   ++F  L NW +E         P N    + GNK D+
Sbjct:    6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKEL----RQHGPPNIVVAIAGNKCDL 122          
BLAST of EY744346 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.155e-21
Identity = 48/123 (39.02%), Postives = 80/123 (65.04%), Query Frame = 1
Query:  163 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENXPRXVLGNKTDVD 531
            L K++++GDSGVGK+++++++   +F  + K+TIG +F T+ +Q E +    QIWDTAGQER++++  A+YRGA   +LVYD+   ++FDN+  W  E    A      N    + GNK+D++
Sbjct:   12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD----SNIVIMMAGNKSDLN 130          
The following BLAST results are available for this feature:
BLAST of EY744346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB7L_HUMAN6.770e-2240.48Ras-related protein Rab-7L1 OS=Homo sapiens GN=RAB... [more]
RAB1_DISOM6.770e-2240.16Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]
RAB1A_RAT6.770e-2240.16Ras-related protein Rab-1A OS=Rattus norvegicus GN... [more]
RAB1A_MOUSE6.770e-2240.16Ras-related protein Rab-1A OS=Mus musculus GN=Rab1... [more]
RAB1A_HUMAN6.770e-2240.16Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]
RAB1A_CANFA6.770e-2240.16Ras-related protein Rab-1A OS=Canis familiaris GN=... [more]
YPT3_SCHPO8.842e-2239.34GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RAB10_DISOM8.842e-2241.13Ras-related protein Rab-10 OS=Discopyge ommata PE=... [more]
RB22A_HUMAN1.155e-2142.15Ras-related protein Rab-22A OS=Homo sapiens GN=RAB... [more]
RB11C_LOTJA1.155e-2139.02Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-007-F03-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744346 ID=EY744346; Name=EY744346; organism=Citrus sinensis; type=EST; length=1035bp
CCACGCGTCCGCGATATTTTTTTCAATTATCTAAAAATAAATAAATGTTA
ATAATAATAATAATAATTCAGAAAAACTACCTCGTGCAACAGCCAAAACT
ACATTGCACAGAGAAAATTCAATTGCGTTTTGAATAAAAAAATGGCTTCT
CGAAGACGCATGCTCCTCAAAGTTATAATCCTCGGAGACAGCGGGGTTGG
GAAGACTTCTTTGATGAATCAATATGTGAACCGCAAGTTTAGTAACCAGT
ATAAAGCAACCATTGGGGCAGATTTCTTGACCAAAGAAGTCCAATTTGAG
GACAGGCTTTTCACTTTGCAGATATGGGATACAGCTGGACAGGAAAGGTT
TCAAAGTCTTGGAGTGGCTTTCTACCGTGGCGCAGACTGTTGTGTTCTTG
TGTATGATGTGAATGTCATGAAATCATTTGATAATCTCAACAATTGGCGA
GAGGAGTTCCTGATTCAGGCCAGCCCTTCTGATCCTGAAAACTTNCCACG
NNTTGTATTGGGGAACAAGACCGATGTGGATGGTGGGAATAGTCAAGTGG
GGGCTGAGAAGAAGGCAAAGGGCTGGTGTGCCTTCCCAAGGGAATATCCC
TTATTTATGAAACACTGCCAAAAAAAGGTTCAATGAATAAACTGGATTTG
ATAGCATACCCAAAAACCTTCTGAAAACATGAACCTCGAGAAAAAAAAAT
ACAGACCCCACATCGCCTAGCTGACCGGGGGGGGGACCCACACACCAAGC
CTTGCAGCAAGCAGATATACAAAAACGAGGGCAGAGAAGGGAGGGAACGC
ATGTAAACGGAGAGGAAAGCCAAAACGAGAACGACAACAACGACAAGTCC
AGCCGCAGGACCGACTCACTCACGAAAATGACCATTCCACCGCCTTCCAG
CACGCACACACGCCCATCGCCCATTCCGCATACCTGATCCACGCCCTGAC
GCTAGAAGGNCGCTGTATTCACCCCATGCCAACATTGCGATCATTCATGA
GCAACATGACTATATCACTTCATACATATACGATG
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