EY744242

Overview
NameEY744242
Unique NameEY744242
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744242 vs. ExPASy Swiss-Prot
Match: IF5A_DICDI (Eukaryotic translation initiation factor 5A OS=Dictyostelium discoideum GN=eif5a PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 1.305e-36
Identity = 75/145 (51.72%), Postives = 107/145 (73.79%), Query Frame = 2
Query:  119 SKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGKEQINALK 553
            ++A +GAS TFP Q   +RKNG++VIKG PCK+V++STSKTGKHGHAK +   IDIF GKK E+I PS+HN DVP+V+R +Y ++D+ +DG++SLL   G  K+DL LP D+ +  +I    + GK+ +VSV  A+GKE + ++K
Sbjct:   13 AQAGSGASLTFPIQCSALRKNGFVVIKGFPCKIVDMSTSKTGKHGHAKVNITAIDIFTGKKYEEICPSTHNIDVPNVSRKEYTVMDV-QDGYLSLLDAGGEVKEDLALPEDD-IGKEITQMLKEGKEPLVSVISALGKEGVVSVK 155          
BLAST of EY744242 vs. ExPASy Swiss-Prot
Match: IF5A2_CAEEL (Eukaryotic translation initiation factor 5A-2 OS=Caenorhabditis elegans GN=iff-2 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.226e-36
Identity = 84/155 (54.19%), Postives = 110/155 (70.97%), Query Frame = 2
Query:   92 MSDEEH---HFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLL-TENGNTKDDLRLPTDENLLSQIKDGFESGK-DLVVSVQCAMGKEQI 541
            MSD+ H   HF +  D+GA+ TFP+Q   +RKN +++IKGRPCK+VE+STSKTGKHGHAK H V IDIF  KKLEDI PS+HN DVP V R +Y L+ I +DG+ SL+  E+   KDDL+LP D  L  QI+D +E  +  ++V V  A+G+E I
Sbjct:    1 MSDDHHDDEHFHT-GDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAIDIFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLP-DTELGQQIRDAYEKDEGSVLVQVVSAIGEEAI 152          
BLAST of EY744242 vs. ExPASy Swiss-Prot
Match: IF5A1_CAEEL (Eukaryotic translation initiation factor 5A-1 OS=Caenorhabditis elegans GN=iff-1 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.722e-34
Identity = 80/156 (51.28%), Postives = 109/156 (69.87%), Query Frame = 2
Query:  101 EEHHFESK---ADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLL-TENGNTKDDLRLPTDENLLSQIKDGFESGK-DLVVSVQCAMGKEQINALK 553
            E+HH E +   A++GA+ TFP+Q   +RKN +++I+GRPCK+VE+STSKTGKHGHAK H V IDIF  KKLEDI PS+HN DVP V R +Y L+ I EDGF SL+  E+   KDDL++P + +L + I++  E  +  ++V V  A G+E I   K
Sbjct:    3 EDHHDEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAIDIFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMP-EGDLGNTIREALEKDEGSVLVQVVAACGEEAILGYK 156          
BLAST of EY744242 vs. ExPASy Swiss-Prot
Match: IF5A_THEPD (Translation initiation factor 5A OS=Thermofilum pendens (strain Hrk 5) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.960e-16
Identity = 49/132 (37.12%), Postives = 73/132 (55.30%), Query Frame = 2
Query:  146 TFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGKEQI 541
            T P++AG I+   +IVI G PCKVVEV  SKTGKHG AK   VGI  F+G K   +VP+    +VP + +   Q++    D  V L+     +  ++ +P +E + S++ +G E      V V   MG+ +I
Sbjct:    3 TRPEEAGNIKVGSFIVIDGEPCKVVEVEKSKTGKHGSAKARIVGIGFFDGGKRSIVVPTDARVEVPIIKKFTAQVVAFVGDN-VQLMNLEDYSTFEIPMPQEEEIKSKLSEGVE------VEVWEVMGRHKI 127          
BLAST of EY744242 vs. ExPASy Swiss-Prot
Match: IF5A_SCHMA (Eukaryotic translation initiation factor 5A (Fragment) OS=Schistosoma mansoni PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.459e-13
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 2
Query:  128 DAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVG 277
            D GASKT P+Q   +RK G++V+K RPCK+VE+STSKTGKHG AK H VG
Sbjct:    3 DFGASKTLPKQCSALRKGGHVVMKDRPCKIVEMSTSKTGKHGSAKVHLVG 52          
BLAST of EY744242 vs. ExPASy Swiss-Prot
Match: IF5A_SULTO (Translation initiation factor 5A OS=Sulfolobus tokodaii GN=eif5a PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.517e-13
Identity = 39/108 (36.11%), Postives = 61/108 (56.48%), Query Frame = 2
Query:  164 GTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFE 487
            G ++   Y+VI G PC+VVE+S +KTGKHG AK + V I +F G+K   + P     +VP + +   Q++    D    +  EN  T  D+  PTD +++ +I+ G E
Sbjct:    9 GDLKVGNYVVIDGEPCRVVEISKAKTGKHGSAKANIVAIGLFTGQKRTLMAPVDQQVEVPIIEKHIGQILADKGDTITIMDMENYET-FDIEKPTDADIVDKIRPGAE 115          
BLAST of EY744242 vs. ExPASy Swiss-Prot
Match: IF5A_METS5 (Translation initiation factor 5A OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.006e-12
Identity = 45/130 (34.62%), Postives = 71/130 (54.62%), Query Frame = 2
Query:  164 GTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGKEQINALK 553
            G +++  YIVI G PC+VVEV+ +KTGKHG AK + + + IF G K   + P     +VP + +   Q+I    D    +  E   T  ++ +PT+E++ S+IK      KD  V     MG+++I  +K
Sbjct:    9 GEMKEGSYIVIDGEPCRVVEVTKAKTGKHGSAKANIIAVSIFTGAKKTLMAPVDSTVEVPIIEKRMGQVISNVGDKVQIMDLETYET-FEIDMPTEEDVASKIK------KDAEVEYWEVMGRKKIVRVK 131          
BLAST of EY744242 vs. ExPASy Swiss-Prot
Match: IF5A_IGNH4 (Translation initiation factor 5A OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.314e-12
Identity = 41/116 (35.34%), Postives = 65/116 (56.03%), Query Frame = 2
Query:  140 SKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFE 487
            SKT+    G ++   +I+I G PCK+VE+S +KTGKHG AK H V I + +G K   + P     +VP + +   Q++ I+ D  V L+        ++ LP +E L S+++ G E
Sbjct:    2 SKTYAT-LGELKPGNFIMIDGEPCKIVEMSKAKTGKHGSAKAHVVAISLISGAKKTFVAPVDTRVEVPIIEKRVGQVLAITGDS-VQLMDMETYDTFEVPLPEEEELKSRLEPGVE 115          
BLAST of EY744242 vs. ExPASy Swiss-Prot
Match: IF5A_SULAC (Translation initiation factor 5A OS=Sulfolobus acidocaldarius GN=eif5a PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.717e-12
Identity = 41/130 (31.54%), Postives = 69/130 (53.08%), Query Frame = 2
Query:  164 GTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGKEQINALK 553
            G ++   Y++I G PC+VVE++ +KTGKHG AK + V I +F G+K   + P     +VP + +   Q++    D    +  E+  T  DL  PT+  ++S+I+ G E      +     MG+ +I  +K
Sbjct:    9 GDLKVGSYVMIDGEPCRVVEITKAKTGKHGSAKANVVAIGLFTGQKRSLMAPVDQQVEVPIIEKHVGQILADKGDNLTIMDLESYET-FDLEKPTENEIVSKIRPGAE------IEYWSVMGRRKIVRVK 131          
BLAST of EY744242 vs. ExPASy Swiss-Prot
Match: IF5A_STAMF (Translation initiation factor 5A OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.717e-12
Identity = 46/134 (34.33%), Postives = 67/134 (50.00%), Query Frame = 2
Query:  140 SKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGKEQI 541
            SKT+    G ++   +I+I G PC++VE+S +KTGKHG AK H V I +F G K   + P     +VP + +   Q+I    D    +  E   T  ++  P+DE L  ++K G E      V     MGK  I
Sbjct:    2 SKTYAT-LGELKPGNFIIIDGEPCRIVEMSKAKTGKHGSAKAHVVAIGLFTGNKKTLVAPVDQRVEVPVIEKRVGQIIADMGDLLQVMDMETFET-FEVEKPSDEKLREKLKPGVE------VEYWVVMGKRMI 127          
The following BLAST results are available for this feature:
BLAST of EY744242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
IF5A_DICDI1.305e-3651.72Eukaryotic translation initiation factor 5A OS=Dic... [more]
IF5A2_CAEEL2.226e-3654.19Eukaryotic translation initiation factor 5A-2 OS=C... [more]
IF5A1_CAEEL2.722e-3451.28Eukaryotic translation initiation factor 5A-1 OS=C... [more]
IF5A_THEPD1.960e-1637.12Translation initiation factor 5A OS=Thermofilum pe... [more]
IF5A_SCHMA3.459e-1366.00Eukaryotic translation initiation factor 5A (Fragm... [more]
IF5A_SULTO4.517e-1336.11Translation initiation factor 5A OS=Sulfolobus tok... [more]
IF5A_METS51.006e-1234.62Translation initiation factor 5A OS=Metallosphaera... [more]
IF5A_IGNH41.314e-1235.34Translation initiation factor 5A OS=Ignicoccus hos... [more]
IF5A_SULAC1.717e-1231.54Translation initiation factor 5A OS=Sulfolobus aci... [more]
IF5A_STAMF1.717e-1234.33Translation initiation factor 5A OS=Staphylothermu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-E01-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744242 ID=EY744242; Name=EY744242; organism=Citrus sinensis; type=EST; length=880bp
CCCGCGTCCGCGGACGCGTGGGAGGTATAGTTCGATTCTAACAAAATTTG
GTTGTCGAAGCTCTAATTGTGAATCGCAGGAACCAGACGATATGTCGGAC
GAAGAGCACCACTTTGAGTCGAAGGCCGACGCCGGCGCCTCCAAGACATT
TCCTCAGCAGGCCGGAACGATTCGCAAAAACGGTTATATCGTCATCAAAG
GTCGTCCTTGCAAGGTTGTTGAGGTTTCAACTTCCAAGACTGGAAAGCAC
GGTCATGCTAAGTGTCACTTTGTAGGAATTGACATCTTCAATGGCAAGAA
GCTTGAGGATATTGTTCCCTCTTCCCACAACTGTGATGTTCCTCATGTCA
CTCGCACTGACTACCAGCTGATTGATATCTCTGAGGATGGATTTGTTAGC
CTGCTGACTGAGAATGGCAATACCAAGGATGACCTGAGACTTCCAACTGA
TGAAAATCTGCTTTCACAGATCAAGGATGGATTTGAGAGTGGGAAAGATC
TGGTTGTCTCAGTTCAGTGTGCTATGGGAAAGGAGCAGATCAATGCCCTG
AAGGACATTGGCCCCAAGTAAAAAACTTTTTGCTTTGATCGAGAATGCAA
ATTGCTGAAACCTGTGGGAAAGGGGGAAAATAATGAAGCTTACTGGGGGC
CGGTTTTCAGAAGAATGTCCTCATTTTCTATAAAAGGACCCTTTACCCAT
ATTATTAATTGTTTTCTACCCGCAATATTTTTTTATTCCGGTTGGATTGG
TTGGAAATTTAAAAACGGGGTTGTTCCCGGGGGGGAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAGGGGGGGCCCGCCCCAAGGGAATCCCAGCCTTTCA
TACCGCGGGGGGTGGGAAACGTAATTACCT
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