EY744241

Overview
NameEY744241
Unique NameEY744241
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB19_XENTR (Ras-related protein Rab-19 OS=Xenopus tropicalis GN=rab19 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.838e-25
Identity = 55/107 (51.40%), Postives = 77/107 (71.96%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEG-LSFLETSALEA 618
            M + GK VK Q+WDTAGQER+R IT +YYR A GA++ YDIT+RQ+F++V  W+ E   +  +N+++M+ GNKSDL   R +  E+  +LAEK G L+ LETSA E+
Sbjct:   57 MNINGKKVKVQVWDTAGQERFRTITQSYYRSAHGAIIAYDITRRQSFESVPHWIYEAEKYGAANLMMMLIGNKSDLAEKRQILFEEACTLAEKHGLLAVLETSAKES 163          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.706e-25
Identity = 52/108 (48.15%), Postives = 78/108 (72.22%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATH 624
            ++++GK +K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL E+  +A  N+  ++ GNKSDL   + V      + A++ G+ FLETSA  AT+
Sbjct:   50 VELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATN 157          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RB43L_HUMAN (Putative Rab-43-like protein ENSP00000330714 OS=Homo sapiens PE=5 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 3.706e-25
Identity = 57/109 (52.29%), Postives = 81/109 (74.31%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEK-EGLSFLETSALEATH 624
            ++++GK VK QIWDTAGQER+R IT +YYR A GA+L YDITKR +F +V  W+ ++R +A SNIV ++ GNKSDL+ LR V+  +  SLAE  + L  +ETSA ++++
Sbjct:   29 LEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSN 137          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB43_HUMAN (Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.706e-25
Identity = 57/109 (52.29%), Postives = 81/109 (74.31%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEK-EGLSFLETSALEATH 624
            ++++GK VK QIWDTAGQER+R IT +YYR A GA+L YDITKR +F +V  W+ ++R +A SNIV ++ GNKSDL+ LR V+  +  SLAE  + L  +ETSA ++++
Sbjct:   60 LEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSN 168          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB1B_PONAB (Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.706e-25
Identity = 52/108 (48.15%), Postives = 77/108 (71.30%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATH 624
            ++++GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T ++++ NV +WL+E+  +A  N+  ++ GNKSDL   + V        A+  G+ FLETSA  AT+
Sbjct:   50 IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATN 157          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB1B_HUMAN (Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.706e-25
Identity = 52/108 (48.15%), Postives = 77/108 (71.30%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATH 624
            ++++GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T ++++ NV +WL+E+  +A  N+  ++ GNKSDL   + V        A+  G+ FLETSA  AT+
Sbjct:   50 IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATN 157          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB1B_BOVIN (Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.706e-25
Identity = 52/108 (48.15%), Postives = 77/108 (71.30%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATH 624
            ++++GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T ++++ NV +WL+E+  +A  N+  ++ GNKSDL   + V        A+  G+ FLETSA  AT+
Sbjct:   50 IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATN 157          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: YPTV2_VOLCA (GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.840e-25
Identity = 57/109 (52.29%), Postives = 73/109 (66.97%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDL-NHLRAVTEEDGHSLAEKEGLSFLETSALEATH 624
            + V+GK VK QIWDTAGQER+R ITSAYYRGA G +LVYDIT   +F+NV  W+R +  HA  N+  ++ GNK DL    R V+   G +LA++ G  F ETSA +  H
Sbjct:   55 VDVDGKLVKLQIWDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRNWMRNIEQHASDNVNKILVGNKLDLAEDKRVVSIARGQALADEFGFRFYETSAKDNVH 163          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.840e-25
Identity = 52/108 (48.15%), Postives = 77/108 (71.30%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATH 624
            ++++GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL+E+  +A  N+  ++ GNK DL   + V        A+  G+ FLETSA  AT+
Sbjct:   50 IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 157          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 4.840e-25
Identity = 53/108 (49.07%), Postives = 76/108 (70.37%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATH 624
            ++++GKT+K QIWDTAGQER+  ITS+YYRGA G L+VYD+T ++++ NV +WL+E+  HA  N+  ++ GNKSDL   + V        A+  G+ FLETSA  AT+
Sbjct:   50 IELDGKTIKLQIWDTAGQERFWTITSSYYRGAHGFLVVYDVTDQESYANVKQWLQEIDRHASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATN 157          
The following BLAST results are available for this feature:
BLAST of EY744241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 401
Match NameE-valueIdentityDescription
RAB19_XENTR2.838e-2551.40Ras-related protein Rab-19 OS=Xenopus tropicalis G... [more]
YPTC1_CHLRE3.706e-2548.15GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]
RB43L_HUMAN3.706e-2552.29Putative Rab-43-like protein ENSP00000330714 OS=Ho... [more]
RAB43_HUMAN3.706e-2552.29Ras-related protein Rab-43 OS=Homo sapiens GN=RAB4... [more]
RAB1B_PONAB3.706e-2548.15Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1... [more]
RAB1B_HUMAN3.706e-2548.15Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1... [more]
RAB1B_BOVIN3.706e-2548.15Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B ... [more]
YPTV2_VOLCA4.840e-2552.29GTP-binding protein yptV2 OS=Volvox carteri GN=YPT... [more]
RAB1_DISOM4.840e-2548.15Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]
RAB1C_HUMAN4.840e-2549.07Putative Ras-related protein Rab-1C OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-D12-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744241 ID=EY744241; Name=EY744241; organism=Citrus sinensis; type=EST; length=624bp
CCACGCGTCCGCAAATATAAATATTAAATAACTGTCTCCGGTACTCTGTC
AAATGAAGATCAATGAACACGATGAGCTGATCTTCTGATAAAGTGATTGA
CATGTTCCTTTGGTCACCCGAGTCCTCAAGAATTTACATCTTTCTTTTGT
GCCTAAGATGTATGGTTTGAGTTTTCTTTTGTGGATATAAGTTCCAACTA
GCATATAATTAAATATACTTGCTTCCTTAAATGTCGTTAATACTGTTGTG
GATAAATTGTTTGCACTCTGGATCTATGTGTAGCTAATATCTAATATTTG
ATGCAGGTAGAAGGGAAAACAGTTAAGGCACAGATTTGGGATACTGCAGG
CCAGGAGCGGTACCGAGCAATCACCAGTGCCTACTATAGAGGAGCAGTTG
GTGCACTCCTTGTCTATGATATAACCAAGAGGCAAACTTTTGACAATGTC
CTAAGGTGGCTTCGTGAATTGAGGGACCATGCAGATTCAAACATTGTCAT
AATGATGGCTGGAAATAAGTCGGACTTAAATCATCTGAGAGCTGTTACCG
AGGAGGATGGCCATTCTTTGGCTGAAAAAGAAGGTCTCTCATTTCTTGAG
ACATCAGCTTTGGAAGCAACCCAT
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