EY744241

Overview
NameEY744241
Unique NameEY744241
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.230e-29
Identity = 57/108 (52.78%), Postives = 81/108 (75.00%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATH 624
            ++++GK +K QIWDTAGQER+R IT+AYYRGA+G +LVYDIT  ++FDN+  W+R + +HA S++  M+ GNK D+N  R V++E G  LA   G+ FLETSA  +T+
Sbjct:   50 IELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTN 157          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.230e-29
Identity = 57/108 (52.78%), Postives = 81/108 (75.00%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATH 624
            ++++GK +K QIWDTAGQER+R IT+AYYRGA+G +LVYDIT  ++FDN+  W+R + +HA S++  M+ GNK D+N  R V++E G  LA   G+ FLETSA  +T+
Sbjct:   50 IELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTN 157          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB2A_DICDI (Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 7.216e-29
Identity = 57/109 (52.29%), Postives = 84/109 (77.06%), Query Frame = 1
Query:  298 LMQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATH 624
            ++ ++ K +K QIWDTAGQE +R+IT +YYRG+ GALLVYDIT+R TF+++  WL++ R +A+SN+ I++ GNKSD+   RAV+ E+G   A++ GL FLETSA  A++
Sbjct:   46 MITIDNKAIKLQIWDTAGQESFRSITRSYYRGSAGALLVYDITRRDTFNHLTCWLKDARSYANSNMTIILIGNKSDMESKRAVSYEEGRQFADENGLIFLETSAKTASN 154          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.608e-28
Identity = 56/103 (54.37%), Postives = 78/103 (75.73%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA 609
            ++++GK +K QIWDTAGQER+R IT+AYYRGA+G +LVYDIT  ++FDN+  W+R + +HA S++  M+ GNK D+N  R V++E G  LA   G+ FLETSA
Sbjct:   50 IELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSA 152          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.109e-28
Identity = 55/103 (53.40%), Postives = 77/103 (74.76%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA 609
            ++++GK +K QIWDTAGQER+R IT+AYYRGA+G + VYDIT  ++FDN+  W+R + +HA S++  M+ GNK D+N  R V++E G  LA   G+ FLETSA
Sbjct:   50 VELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNEKRQVSKERGEKLAIDYGIKFLETSA 152          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB8B_BOVIN (Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.109e-28
Identity = 55/103 (53.40%), Postives = 77/103 (74.76%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA 609
            ++++GK +K QIWDTAGQER+R IT+AYYRGA+G +LVYDIT  ++FDN+  W+R + +HA S++  M+ GNK D+N  R V++E G  LA   G+ FLE SA
Sbjct:   50 IELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLEASA 152          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB8A_RAT (Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 7.978e-28
Identity = 54/103 (52.43%), Postives = 78/103 (75.73%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA 609
            ++++GK +K QIWDTAGQER+R IT+AYYRGA+G +LVYDIT  ++FDN+  W+R + +HA +++  M+ GNK D+N  R V++E G  LA   G+ F+ETSA
Sbjct:   50 IELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSA 152          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.978e-28
Identity = 54/103 (52.43%), Postives = 78/103 (75.73%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA 609
            ++++GK +K QIWDTAGQER+R IT+AYYRGA+G +LVYDIT  ++FDN+  W+R + +HA +++  M+ GNK D+N  R V++E G  LA   G+ F+ETSA
Sbjct:   50 IELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKRDVNDKRQVSKERGEKLALDYGIKFMETSA 152          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB8A_MOUSE (Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 7.978e-28
Identity = 54/103 (52.43%), Postives = 78/103 (75.73%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA 609
            ++++GK +K QIWDTAGQER+R IT+AYYRGA+G +LVYDIT  ++FDN+  W+R + +HA +++  M+ GNK D+N  R V++E G  LA   G+ F+ETSA
Sbjct:   50 IELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSA 152          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB8A_MACFA (Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.978e-28
Identity = 54/103 (52.43%), Postives = 78/103 (75.73%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA 609
            ++++GK +K QIWDTAGQER+R IT+AYYRGA+G +LVYDIT  ++FDN+  W+R + +HA +++  M+ GNK D+N  R V++E G  LA   G+ F+ETSA
Sbjct:   50 IELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSA 152          
The following BLAST results are available for this feature:
BLAST of EY744241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 401
Match NameE-valueIdentityDescription
RAB8B_PONAB4.230e-2952.78Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8... [more]
RAB8B_MOUSE4.230e-2952.78Ras-related protein Rab-8B OS=Mus musculus GN=Rab8... [more]
RAB2A_DICDI7.216e-2952.29Ras-related protein Rab-2A OS=Dictyostelium discoi... [more]
RAB8B_HUMAN1.608e-2854.37Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
RAB8_DISOM6.109e-2853.40Ras-related protein Rab-8 OS=Discopyge ommata PE=2... [more]
RAB8B_BOVIN6.109e-2853.40Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B ... [more]
RAB8A_RAT7.978e-2852.43Ras-related protein Rab-8A OS=Rattus norvegicus GN... [more]
RAB8A_PONAB7.978e-2852.43Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8... [more]
RAB8A_MOUSE7.978e-2852.43Ras-related protein Rab-8A OS=Mus musculus GN=Rab8... [more]
RAB8A_MACFA7.978e-2852.43Ras-related protein Rab-8A OS=Macaca fascicularis ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-D12-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744241 ID=EY744241; Name=EY744241; organism=Citrus sinensis; type=EST; length=624bp
CCACGCGTCCGCAAATATAAATATTAAATAACTGTCTCCGGTACTCTGTC
AAATGAAGATCAATGAACACGATGAGCTGATCTTCTGATAAAGTGATTGA
CATGTTCCTTTGGTCACCCGAGTCCTCAAGAATTTACATCTTTCTTTTGT
GCCTAAGATGTATGGTTTGAGTTTTCTTTTGTGGATATAAGTTCCAACTA
GCATATAATTAAATATACTTGCTTCCTTAAATGTCGTTAATACTGTTGTG
GATAAATTGTTTGCACTCTGGATCTATGTGTAGCTAATATCTAATATTTG
ATGCAGGTAGAAGGGAAAACAGTTAAGGCACAGATTTGGGATACTGCAGG
CCAGGAGCGGTACCGAGCAATCACCAGTGCCTACTATAGAGGAGCAGTTG
GTGCACTCCTTGTCTATGATATAACCAAGAGGCAAACTTTTGACAATGTC
CTAAGGTGGCTTCGTGAATTGAGGGACCATGCAGATTCAAACATTGTCAT
AATGATGGCTGGAAATAAGTCGGACTTAAATCATCTGAGAGCTGTTACCG
AGGAGGATGGCCATTCTTTGGCTGAAAAAGAAGGTCTCTCATTTCTTGAG
ACATCAGCTTTGGAAGCAACCCAT
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