EY744241

Overview
NameEY744241
Unique NameEY744241
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB8A_HUMAN (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.978e-28
Identity = 54/103 (52.43%), Postives = 78/103 (75.73%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA 609
            ++++GK +K QIWDTAGQER+R IT+AYYRGA+G +LVYDIT  ++FDN+  W+R + +HA +++  M+ GNK D+N  R V++E G  LA   G+ F+ETSA
Sbjct:   50 IELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSA 152          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB8A_CANFA (Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.978e-28
Identity = 54/103 (52.43%), Postives = 78/103 (75.73%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA 609
            ++++GK +K QIWDTAGQER+R IT+AYYRGA+G +LVYDIT  ++FDN+  W+R + +HA +++  M+ GNK D+N  R V++E G  LA   G+ F+ETSA
Sbjct:   50 IELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSA 152          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB8A_BOVIN (Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.978e-28
Identity = 54/103 (52.43%), Postives = 78/103 (75.73%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA 609
            ++++GK +K QIWDTAGQER+R IT+AYYRGA+G +LVYDIT  ++FDN+  W+R + +HA +++  M+ GNK D+N  R V++E G  LA   G+ F+ETSA
Sbjct:   50 IELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSA 152          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB37_HUMAN (Ras-related protein Rab-37 OS=Homo sapiens GN=RAB37 PE=1 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 2.321e-27
Identity = 62/134 (46.27%), Postives = 89/134 (66.42%), Query Frame = 1
Query:  217 TCFL---KCR*YCCG*IVCTLDLCVANI*YLMQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA 609
            TCFL   K   +  G  + T+ +   N   ++ V+G  VK QIWDTAGQER+R++T AYYR A   LL+YDIT + +FDN+  WL E+ ++A  ++VIM+ GNK+D++  R +  EDG +LA + G+ FLETSA
Sbjct:   43 TCFLIQFKDGAFLSGTFIATVGIDFRN--KVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSA 174          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.032e-27
Identity = 56/108 (51.85%), Postives = 82/108 (75.93%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATH 624
            ++ +GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL E+  +A  N+  ++ GNK DL   R V+ E G +LA++ G+ FLETSA +AT+
Sbjct:   50 VEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAENRVVSYEAGKALADEIGIPFLETSAKDATN 157          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB8A_CHICK (Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.960e-27
Identity = 53/103 (51.46%), Postives = 75/103 (72.82%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA 609
            ++++GK +K QIWDTAGQER+R IT+AYYRGA+G +LVYDIT  ++F+N+  W+R + +HA  ++  M+ GNK D N  R V+ E G  LA   G+ F+ETSA
Sbjct:   50 IELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIRNWVRNIEEHASPDVEKMILGNKCDANDKRQVSREQGEKLAASFGIKFMETSA 152          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB37_MOUSE (Ras-related protein Rab-37 OS=Mus musculus GN=Rab37 PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 6.754e-27
Identity = 61/134 (45.52%), Postives = 89/134 (66.42%), Query Frame = 1
Query:  217 TCFL---KCR*YCCG*IVCTLDLCVANI*YLMQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA 609
            TCFL   K   +  G  + T+ +   N   ++ V+G  VK QIWDTAGQER+R++T AYYR A   LL+YDIT + +FDN+  WL E+ ++A  ++VIM+ GNK+D++  R +  EDG +LA + G+ F+ETSA
Sbjct:   43 TCFLIQFKDGAFLSGTFIATVGIDSRN--KVVTVDGARVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNQSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADVSSERVIRSEDGETLAREYGVPFMETSA 174          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 8.821e-27
Identity = 54/108 (50.00%), Postives = 80/108 (74.07%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATH 624
            ++ +GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T  ++F+NV +WL E+  +A  N+  ++ GNKSDL   RA+  E   + A++ G+ F+ETSA +AT+
Sbjct:   50 VEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTENRAIPYETAKAFADEIGIPFMETSAKDATN 157          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB4B_RAT (Ras-related protein Rab-4B OS=Rattus norvegicus GN=Rab4b PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.152e-26
Identity = 58/105 (55.24%), Postives = 77/105 (73.33%), Query Frame = 1
Query:  298 LMQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSAL 612
            ++ V GKTVK QIWDTAGQER+R++T +YYRGA GALLVYDIT R+T++++  WL + R  A  NIV+++ GNK DL+  R VT  +    A++  L FLETSAL
Sbjct:   49 VVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSAL 153          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB4B_MOUSE (Ras-related protein Rab-4B OS=Mus musculus GN=Rab4b PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.152e-26
Identity = 58/105 (55.24%), Postives = 77/105 (73.33%), Query Frame = 1
Query:  298 LMQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSAL 612
            ++ V GKTVK QIWDTAGQER+R++T +YYRGA GALLVYDIT R+T++++  WL + R  A  NIV+++ GNK DL+  R VT  +    A++  L FLETSAL
Sbjct:   49 VVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSAL 153          
The following BLAST results are available for this feature:
BLAST of EY744241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 401
Match NameE-valueIdentityDescription
RAB8A_HUMAN7.978e-2852.43Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8... [more]
RAB8A_CANFA7.978e-2852.43Ras-related protein Rab-8A OS=Canis familiaris GN=... [more]
RAB8A_BOVIN7.978e-2852.43Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A ... [more]
RAB37_HUMAN2.321e-2746.27Ras-related protein Rab-37 OS=Homo sapiens GN=RAB3... [more]
RIC1_ORYSJ3.032e-2751.85Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]
RAB8A_CHICK3.960e-2751.46Ras-related protein Rab-8A OS=Gallus gallus GN=RAB... [more]
RAB37_MOUSE6.754e-2745.52Ras-related protein Rab-37 OS=Mus musculus GN=Rab3... [more]
RBD2A_ARATH8.821e-2750.00Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
RAB4B_RAT1.152e-2655.24Ras-related protein Rab-4B OS=Rattus norvegicus GN... [more]
RAB4B_MOUSE1.152e-2655.24Ras-related protein Rab-4B OS=Mus musculus GN=Rab4... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-D12-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744241 ID=EY744241; Name=EY744241; organism=Citrus sinensis; type=EST; length=624bp
CCACGCGTCCGCAAATATAAATATTAAATAACTGTCTCCGGTACTCTGTC
AAATGAAGATCAATGAACACGATGAGCTGATCTTCTGATAAAGTGATTGA
CATGTTCCTTTGGTCACCCGAGTCCTCAAGAATTTACATCTTTCTTTTGT
GCCTAAGATGTATGGTTTGAGTTTTCTTTTGTGGATATAAGTTCCAACTA
GCATATAATTAAATATACTTGCTTCCTTAAATGTCGTTAATACTGTTGTG
GATAAATTGTTTGCACTCTGGATCTATGTGTAGCTAATATCTAATATTTG
ATGCAGGTAGAAGGGAAAACAGTTAAGGCACAGATTTGGGATACTGCAGG
CCAGGAGCGGTACCGAGCAATCACCAGTGCCTACTATAGAGGAGCAGTTG
GTGCACTCCTTGTCTATGATATAACCAAGAGGCAAACTTTTGACAATGTC
CTAAGGTGGCTTCGTGAATTGAGGGACCATGCAGATTCAAACATTGTCAT
AATGATGGCTGGAAATAAGTCGGACTTAAATCATCTGAGAGCTGTTACCG
AGGAGGATGGCCATTCTTTGGCTGAAAAAGAAGGTCTCTCATTTCTTGAG
ACATCAGCTTTGGAAGCAACCCAT
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