EY744241

Overview
NameEY744241
Unique NameEY744241
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB26_RAT (Ras-related protein Rab-26 OS=Rattus norvegicus GN=Rab26 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.965e-26
Identity = 54/104 (51.92%), Postives = 75/104 (72.12%), Query Frame = 1
Query:  298 LMQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA 609
            ++ V+G  VK QIWDTAGQER+R++T AYYR A   LL+YDIT + +FDN+  WL E++++A  ++V+M+ GNK D    R V  EDG  LA++ GL F+ETSA
Sbjct:  106 VLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQERVVKREDGEKLAKEYGLPFMETSA 209          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB26_MOUSE (Ras-related protein Rab-26 OS=Mus musculus GN=Rab26 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.567e-26
Identity = 54/104 (51.92%), Postives = 75/104 (72.12%), Query Frame = 1
Query:  298 LMQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA 609
            ++ V+G  VK QIWDTAGQER+R++T AYYR A   LL+YDIT + +FDN+  WL E++++A  ++V+M+ GNK D    R V  EDG  LA++ GL F+ETSA
Sbjct:  109 VLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQDRVVKREDGEKLAKEYGLPFMETSA 212          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.352e-26
Identity = 53/108 (49.07%), Postives = 79/108 (73.15%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATH 624
            ++ +GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL E+  +A  N+  ++ GNKSDL   + V  E   + A++ G+ F+ETSA  AT+
Sbjct:   50 VEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDLTANKVVATETAKAFADEMGIPFMETSAKNATN 157          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.352e-26
Identity = 52/103 (50.49%), Postives = 74/103 (71.84%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA 609
            +++EGK +K QIWDTAGQER+R IT+AYYRGA+G LLVYD+T  ++F ++  W+R +  HA  ++  M+ GNK D+   + V    G SLA++ G+ FLETSA
Sbjct:   57 IELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSVNKMLIGNKCDMTEKKVVDSSRGKSLADEYGIKFLETSA 159          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.718e-26
Identity = 54/108 (50.00%), Postives = 78/108 (72.22%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATH 624
            ++++GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL E+  +A  N+  ++ GNKSDL   R V+ +     AE  G+ FLETSA  A +
Sbjct:   50 IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAAN 157          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RB11B_DICDI (Ras-related protein Rab-11B OS=Dictyostelium discoideum GN=rab11B PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.718e-26
Identity = 50/108 (46.30%), Postives = 80/108 (74.07%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATH 624
            ++++ K +K Q+WDTAGQE+Y +IT +YY+GA+GAL+VY+I  R +F+N+ +WL++ R++A  +  IM+ GNKSDL   R V+  +G   AEK  + F+ETSAL++ +
Sbjct:   53 LKIDNKLIKLQLWDTAGQEKYNSITESYYKGAIGALIVYNIADRNSFNNLEKWLKKFRENAHQDYGIMLVGNKSDLKEYREVSTLEGKQFAEKHYMQFIETSALDSNN 160          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.467e-26
Identity = 52/103 (50.49%), Postives = 74/103 (71.84%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA 609
            ++++GK +K QIWDTAGQER+R IT+AYYRGA+G LL+YD+T +++FDNV  W   +  HA  N+  ++ GNK D    R V+ E G +LA++ G+ FLE SA
Sbjct:   51 IELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQRQVSFEQGQALADELGVKFLEASA 153          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB26_HUMAN (Ras-related protein Rab-26 OS=Homo sapiens GN=RAB26 PE=1 SV=3)

HSP 1 Score: 117.087 bits (292), Expect = 7.467e-26
Identity = 68/169 (40.24%), Postives = 97/169 (57.40%), Query Frame = 1
Query:  112 GHPSPQEFTSFFCA*DVWFEFSFVDISSN*HIIKYTCFL---KCR*YCCG*IVCTLDLCVANI*YLMQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA 609
            G PS      F+   DV F+   V  S     +  TC L   K   +  G  + T+ +   N   ++ V+G  VK Q+WDTAGQER+R++T AYYR A   LL+YD+T + +FDN+  WL E+ ++A  ++ +M+ GNK D  H R V  EDG  LA++ GL F+ETSA
Sbjct:   49 GRPSLGGGVDFY---DVAFKVMLVGDSG----VGKTCLLVRFKDGAFLAGTFISTVGIDFRN--KVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSA 208          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB14_DICDI (Ras-related protein Rab-14 OS=Dictyostelium discoideum GN=rab14 PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 7.467e-26
Identity = 55/104 (52.88%), Postives = 76/104 (73.08%), Query Frame = 1
Query:  298 LMQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA 609
            ++ V  K +K QIWDTAGQER+RA+T +YYRGA GALLVYDIT+R T++++  WL + R+  + N VIM+ GNK DL   R VT E+  + A++ GL F+E+SA
Sbjct:   49 IVDVNNKKIKLQIWDTAGQERFRAVTRSYYRGAAGALLVYDITRRITYNHLTTWLTDARNLTNPNTVIMLIGNKKDLEGQRDVTYEEASAFAKQNGLIFVESSA 152          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: SEC4_CANGA (Ras-related protein SEC4 OS=Candida glabrata GN=SEC4 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.753e-26
Identity = 52/103 (50.49%), Postives = 77/103 (74.76%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA 609
            + + GK VK Q+WDTAGQER+R IT+AYYRGA+G +LVYD+T  +TF N+ +W + + +HA+    +++ GNKSD++  R VT E G +LA++ GL F+E+SA
Sbjct:   62 VDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFANIKQWFKTVNEHANDEAQLLLVGNKSDMD-TRVVTYEQGEALAKELGLPFIESSA 163          
The following BLAST results are available for this feature:
BLAST of EY744241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 401
Match NameE-valueIdentityDescription
RAB26_RAT1.965e-2651.92Ras-related protein Rab-26 OS=Rattus norvegicus GN... [more]
RAB26_MOUSE2.567e-2651.92Ras-related protein Rab-26 OS=Mus musculus GN=Rab2... [more]
YPTM2_MAIZE3.352e-2649.07GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=... [more]
RAB8B_DICDI3.352e-2650.49Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
YPT1_PHYIN5.718e-2650.00Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
RB11B_DICDI5.718e-2646.30Ras-related protein Rab-11B OS=Dictyostelium disco... [more]
YPT2_SCHPO7.467e-2650.49GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]
RAB26_HUMAN7.467e-2640.24Ras-related protein Rab-26 OS=Homo sapiens GN=RAB2... [more]
RAB14_DICDI7.467e-2652.88Ras-related protein Rab-14 OS=Dictyostelium discoi... [more]
SEC4_CANGA9.753e-2650.49Ras-related protein SEC4 OS=Candida glabrata GN=SE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-D12-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744241 ID=EY744241; Name=EY744241; organism=Citrus sinensis; type=EST; length=624bp
CCACGCGTCCGCAAATATAAATATTAAATAACTGTCTCCGGTACTCTGTC
AAATGAAGATCAATGAACACGATGAGCTGATCTTCTGATAAAGTGATTGA
CATGTTCCTTTGGTCACCCGAGTCCTCAAGAATTTACATCTTTCTTTTGT
GCCTAAGATGTATGGTTTGAGTTTTCTTTTGTGGATATAAGTTCCAACTA
GCATATAATTAAATATACTTGCTTCCTTAAATGTCGTTAATACTGTTGTG
GATAAATTGTTTGCACTCTGGATCTATGTGTAGCTAATATCTAATATTTG
ATGCAGGTAGAAGGGAAAACAGTTAAGGCACAGATTTGGGATACTGCAGG
CCAGGAGCGGTACCGAGCAATCACCAGTGCCTACTATAGAGGAGCAGTTG
GTGCACTCCTTGTCTATGATATAACCAAGAGGCAAACTTTTGACAATGTC
CTAAGGTGGCTTCGTGAATTGAGGGACCATGCAGATTCAAACATTGTCAT
AATGATGGCTGGAAATAAGTCGGACTTAAATCATCTGAGAGCTGTTACCG
AGGAGGATGGCCATTCTTTGGCTGAAAAAGAAGGTCTCTCATTTCTTGAG
ACATCAGCTTTGGAAGCAACCCAT
back to top