EY744240

Overview
NameEY744240
Unique NameEY744240
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744240 vs. ExPASy Swiss-Prot
Match: RL4_BOVIN (60S ribosomal protein L4 OS=Bos taurus GN=RPL4 PE=2 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 1.804e-27
Identity = 62/153 (40.52%), Postives = 88/153 (57.52%), Query Frame = 2
Query:   11 GEMRNTRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXXYAKTARRMSLLAEAQ 469
            G+MRN R I R+GP ++Y+ +   ++KAFRNIPG              APGGH+GRF +WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R                   YAKT RR ++L +A+
Sbjct:  194 GKMRNRRRIQRRGPCIIYNEDNG-IIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMLNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345          
BLAST of EY744240 vs. ExPASy Swiss-Prot
Match: RL4_MACFA (60S ribosomal protein L4 OS=Macaca fascicularis GN=RPL4 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.952e-27
Identity = 61/153 (39.87%), Postives = 87/153 (56.86%), Query Frame = 2
Query:   11 GEMRNTRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXXYAKTARRMSLLAEAQ 469
            G+MRN R I R+GP ++Y+ +   ++KAFRNIPG              APGGH+GRF +WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R                   YAKT R  ++L +A+
Sbjct:  194 GKMRNRRRIQRRGPCIIYNEDNG-IIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRWNTILRQAR 345          
BLAST of EY744240 vs. ExPASy Swiss-Prot
Match: RL4A_SCHPO (60S ribosomal protein L4-A OS=Schizosaccharomyces pombe GN=rpl4a PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.994e-26
Identity = 60/121 (49.59%), Postives = 82/121 (67.77%), Query Frame = 2
Query:   11 GEMRNTRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPI-KTEVKRA 370
            G++RN R++ R+GPLVV++ E A +VKAFRNIPG              APGGHLGRF++WTKSAF  LD ++G   + ++ KK Y LP   + NAD+ R+INSDE+QS+V+    + VKRA
Sbjct:  194 GKLRNRRHVQRRGPLVVFN-EDAGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRA 313          
BLAST of EY744240 vs. ExPASy Swiss-Prot
Match: RL4_DROME (60S ribosomal protein L4 OS=Drosophila melanogaster GN=RpL4 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 7.578e-26
Identity = 62/154 (40.26%), Postives = 90/154 (58.44%), Query Frame = 2
Query:   11 GEMRNTRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXXYAKTARRMSLLAEAQR 472
            G MR+ R I+R+GPLVVY  +   L KAFRNIPG              APGGH+GRF++WT+SAF +L++++G + K S  KKGY LP+ KM N DL+R++ S+E++ V+R  +  V R+                  YA+  +R + LA  +R
Sbjct:  197 GTMRDRRRIARRGPLVVYDKDEG-LRKAFRNIPGIETINVDKLNLLKLAPGGHVGRFVIWTESAFARLNDLFGTWKKPSTLKKGYNLPQPKMANTDLSRLLKSEEIRKVLRDPRKRVFRSVRRLNPLTNVRQLIKLNPYAEVLKRRAALAAEKR 349          
BLAST of EY744240 vs. ExPASy Swiss-Prot
Match: RL4B_SCHPO (60S ribosomal protein L4-B OS=Schizosaccharomyces pombe GN=rpl4b PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.293e-25
Identity = 59/121 (48.76%), Postives = 81/121 (66.94%), Query Frame = 2
Query:   11 GEMRNTRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPI-KTEVKRA 370
            G++RN R++ R+GPLVV++ E   +VKAFRNIPG              APGGHLGRF++WTKSAF  LD ++G   + ++ KK Y LP   + NAD+ R+INSDE+QS+V+    + VKRA
Sbjct:  194 GKLRNRRHVQRRGPLVVFN-EDTGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRA 313          
BLAST of EY744240 vs. ExPASy Swiss-Prot
Match: RL4_URECA (60S ribosomal protein L4 OS=Urechis caupo GN=RPL4 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.158e-24
Identity = 53/119 (44.54%), Postives = 76/119 (63.87%), Query Frame = 2
Query:   11 GEMRNTRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKR 367
            G++RN R I R+GPL++Y  +   + +AFRNIPG              APGGH+GRF +WT+SAF++LD IYG + + S +K  Y LP  KM N DL+R++ SDE+Q+ +R  K +  R
Sbjct:  193 GKLRNRRAIQRRGPLIIYGTDNG-ISRAFRNIPGITLVNVNRLNLLSMAPGGHVGRFCIWTESAFKQLDNIYGTWKRPSAEKSHYNLPMPKMTNTDLSRLLKSDEIQNALREPKKDKAR 310          
BLAST of EY744240 vs. ExPASy Swiss-Prot
Match: RL4_TRYBB (60S ribosomal protein L4 OS=Trypanosoma brucei brucei GN=RPL4 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.264e-24
Identity = 55/119 (46.22%), Postives = 78/119 (65.55%), Query Frame = 2
Query:   11 GEMRNTRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKR 367
            G+MRN RY++R+GP++V      K  +AFRNI G              APGGH+GRFI+WTKSAFEKLD+I+G F + S  K G++LP   + + D+ RI+ S+EV+ V++P K + KR
Sbjct:  193 GKMRNRRYVARRGPMLVMPDN--KGTRAFRNIFGLDLANVNSLNLLHLAPGGHVGRFIIWTKSAFEKLDKIFGTFTEPSTVKSGFMLPAPMLTSTDVTRIMQSEEVRRVLKPKKLQPKR 309          
BLAST of EY744240 vs. ExPASy Swiss-Prot
Match: RL4_CANFA (60S ribosomal protein L4 OS=Canis familiaris GN=RPL4 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 4.598e-23
Identity = 56/153 (36.60%), Postives = 82/153 (53.59%), Query Frame = 2
Query:   11 GEMRNTRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXXYAKTARRMSLLAEAQ 469
            G+MRN R I R+GP ++Y+ +   ++KAFR  PG              APGGH+GRF +WT+SAF KLD++YG + K +  K  Y LP  KM+N DL+RI+        +R  + ++ R                   YAKT RR ++L +A+
Sbjct:  194 GKMRNRRRIQRRGPCIIYNEDNG-IIKAFRKHPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDDLYGTWRKAASLKSNYNLPMHKMLNTDLSRILKMPRDPRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAK 345          
BLAST of EY744240 vs. ExPASy Swiss-Prot
Match: RL4B_YEAST (60S ribosomal protein L4-B OS=Saccharomyces cerevisiae GN=RPL4B PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 1.132e-21
Identity = 52/112 (46.43%), Postives = 71/112 (63.39%), Query Frame = 2
Query:   11 GEMRNTRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRP 346
            G+ RN R+  R+GPLVVY AE   +VKA RN+PG              APG HLGRF++WT++AF KLD+++G  +  +  K GY LP   +  +D+ RIINS E+QS +RP
Sbjct:  192 GKYRNRRWTQRRGPLVVY-AEDNGIVKALRNVPGVETANVASLNLLQLAPGAHLGRFVIWTEAAFTKLDQVWGS-ETVASSKVGYTLPSHIISTSDVTRIINSSEIQSAIRP 301          
BLAST of EY744240 vs. ExPASy Swiss-Prot
Match: RL4A_YEAST (60S ribosomal protein L4-A OS=Saccharomyces cerevisiae GN=RPL4A PE=1 SV=4)

HSP 1 Score: 103.99 bits (258), Expect = 1.132e-21
Identity = 52/112 (46.43%), Postives = 71/112 (63.39%), Query Frame = 2
Query:   11 GEMRNTRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRP 346
            G+ RN R+  R+GPLVVY AE   +VKA RN+PG              APG HLGRF++WT++AF KLD+++G  +  +  K GY LP   +  +D+ RIINS E+QS +RP
Sbjct:  192 GKYRNRRWTQRRGPLVVY-AEDNGIVKALRNVPGVETANVASLNLLQLAPGAHLGRFVIWTEAAFTKLDQVWGS-ETVASSKVGYTLPSHIISTSDVTRIINSSEIQSAIRP 301          
The following BLAST results are available for this feature:
BLAST of EY744240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RL4_BOVIN1.804e-2740.5260S ribosomal protein L4 OS=Bos taurus GN=RPL4 PE=... [more]
RL4_MACFA8.952e-2739.8760S ribosomal protein L4 OS=Macaca fascicularis GN... [more]
RL4A_SCHPO1.994e-2649.5960S ribosomal protein L4-A OS=Schizosaccharomyces ... [more]
RL4_DROME7.578e-2640.2660S ribosomal protein L4 OS=Drosophila melanogaste... [more]
RL4B_SCHPO1.293e-2548.7660S ribosomal protein L4-B OS=Schizosaccharomyces ... [more]
RL4_URECA4.158e-2444.5460S ribosomal protein L4 OS=Urechis caupo GN=RPL4 ... [more]
RL4_TRYBB9.264e-2446.2260S ribosomal protein L4 OS=Trypanosoma brucei bru... [more]
RL4_CANFA4.598e-2336.6060S ribosomal protein L4 OS=Canis familiaris GN=RP... [more]
RL4B_YEAST1.132e-2146.4360S ribosomal protein L4-B OS=Saccharomyces cerevi... [more]
RL4A_YEAST1.132e-2146.4360S ribosomal protein L4-A OS=Saccharomyces cerevi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-D11-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744240 ID=EY744240; Name=EY744240; organism=Citrus sinensis; type=EST; length=857bp
CCACGCGTCCGGGGAAATGAGAAATACCCGCTACATTTCTCGCAAGGGCC
CGCTTGTTGTGTACTCAGCTGAGGGTGCTAAGCTTGTCAAGGCCTTTAGG
AACATTCCCGGTGTTGAGGTTGTGAATGTTGAGAGATTGAACTTGTTGAA
GCTGGCGCCGGGTGGCCATCTCGGGCGGTTTATTGTTTGGACTAAATCGG
CTTTTGAGAAGCTTGATGAGATTTATGGTAAGTTTGATAAGGGTTCCGAG
AAGAAGAAGGGTTATGTGCTGCCTCGTGCTAAGATGGTCAACGCTGATTT
GGCTAGGATTATTAACTCGGATGAGGTGCAGTCTGTTGTAAGGCCGATTA
AGACGGAGGTTAAGAGGGCTCCGATGAAGAAAAATCCTCTCAAGAACTTG
AATACTCTGTTGCGGTTGAACCCATATGCTAAGACTGCTCGGAGGATGTC
TCTTTTGGCTGAGGCACAACGGGTTAAAGCTAAGAAGGAGAAGCTCGACA
AGAAAAGGAAGCCCATCACTAAGGAGGAGGCCGCTGCGATCAAGGCTGCC
GGCAAGGCATGGTAACAGACGATGATCTCAAACAGTGATTATACTGATTT
TGAGAACTTCCCAAAATGGTTGGGTGTCTCACATAAATCTGATTGTTGGT
TTTTAAATTTTGTTTTTCAAAAAAATATTTTGTTTTTCTTTTCCGGGATT
TGGTTGTTGAACCCTAATCCCTTTTACCCCTTTTTAATCCATGGGAGAAA
AATTGGTGGGAAGGAAAAAAGAAGGGGATTTGGGAAAAGTGTGTAAACTT
TTTTTTTTCCCCCTTTCCGGCCATTTTTTTTGTCCCCTATCCCAAATAGG
GGGAAAA
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