EY744240

Overview
NameEY744240
Unique NameEY744240
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744240 vs. ExPASy Swiss-Prot
Match: RL4_CAEEL (60S ribosomal protein L4 OS=Caenorhabditis elegans GN=rpl-4 PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 8.116e-20
Identity = 51/115 (44.35%), Postives = 71/115 (61.74%), Query Frame = 2
Query:   11 GEMRNTRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYG-KFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIK 352
            G++RN ++  + GP+V+Y  + A+  +AFRNIPG              APGGHLGR I+WT+SAF+KLD IYG      S+ KKG+ +P   M N+D +RII S+EV   +R  K
Sbjct:  193 GKLRNRQHKQKLGPVVIYGQD-AECARAFRNIPGVDVMNVERLNLLKLAPGGHLGRLIIWTESAFKKLDTIYGTTVANSSQLKKGWSVPLPIMANSDFSRIIRSEEVVKAIRAPK 306          
BLAST of EY744240 vs. ExPASy Swiss-Prot
Match: RL4_XENTR (60S ribosomal protein L4 (Fragment) OS=Xenopus tropicalis GN=rpl4 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.482e-13
Identity = 35/71 (49.30%), Postives = 48/71 (67.61%), Query Frame = 2
Query:  155 APGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKR 367
            A GGH+GRF +WT+S+F KLD++YG + K ++ K  Y LP  KM N DL RI+ S E+Q  +R    +VKR
Sbjct:   15 ALGGHVGRFCIWTESSFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKR 85          
BLAST of EY744240 vs. ExPASy Swiss-Prot
Match: RL4_ENTHI (60S ribosomal protein L4 (Fragments) OS=Entamoeba histolytica GN=RPL4 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.633e-13
Identity = 40/99 (40.40%), Postives = 55/99 (55.56%), Query Frame = 2
Query:   11 GEMRNTRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLAR 307
            G+MR  +   RKGPLVVY  +  + VKAFRNIPG              APG H+GRFI+W +SAF+KL+  +G   + ++   G+      +V A L R
Sbjct:  148 GKMRGRKIKERKGPLVVYGNDDLQAVKAFRNIPGVDTCRVENLSVLNLAPGCHMGRFIIWPESAFKKLNTTFGTQKEMAQGPSGF----KNLVTAQLGR 242          
The following BLAST results are available for this feature:
BLAST of EY744240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RL4_CAEEL8.116e-2044.3560S ribosomal protein L4 OS=Caenorhabditis elegans... [more]
RL4_XENTR1.482e-1349.3060S ribosomal protein L4 (Fragment) OS=Xenopus tro... [more]
RL4_ENTHI5.633e-1340.4060S ribosomal protein L4 (Fragments) OS=Entamoeba ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-D11-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744240 ID=EY744240; Name=EY744240; organism=Citrus sinensis; type=EST; length=857bp
CCACGCGTCCGGGGAAATGAGAAATACCCGCTACATTTCTCGCAAGGGCC
CGCTTGTTGTGTACTCAGCTGAGGGTGCTAAGCTTGTCAAGGCCTTTAGG
AACATTCCCGGTGTTGAGGTTGTGAATGTTGAGAGATTGAACTTGTTGAA
GCTGGCGCCGGGTGGCCATCTCGGGCGGTTTATTGTTTGGACTAAATCGG
CTTTTGAGAAGCTTGATGAGATTTATGGTAAGTTTGATAAGGGTTCCGAG
AAGAAGAAGGGTTATGTGCTGCCTCGTGCTAAGATGGTCAACGCTGATTT
GGCTAGGATTATTAACTCGGATGAGGTGCAGTCTGTTGTAAGGCCGATTA
AGACGGAGGTTAAGAGGGCTCCGATGAAGAAAAATCCTCTCAAGAACTTG
AATACTCTGTTGCGGTTGAACCCATATGCTAAGACTGCTCGGAGGATGTC
TCTTTTGGCTGAGGCACAACGGGTTAAAGCTAAGAAGGAGAAGCTCGACA
AGAAAAGGAAGCCCATCACTAAGGAGGAGGCCGCTGCGATCAAGGCTGCC
GGCAAGGCATGGTAACAGACGATGATCTCAAACAGTGATTATACTGATTT
TGAGAACTTCCCAAAATGGTTGGGTGTCTCACATAAATCTGATTGTTGGT
TTTTAAATTTTGTTTTTCAAAAAAATATTTTGTTTTTCTTTTCCGGGATT
TGGTTGTTGAACCCTAATCCCTTTTACCCCTTTTTAATCCATGGGAGAAA
AATTGGTGGGAAGGAAAAAAGAAGGGGATTTGGGAAAAGTGTGTAAACTT
TTTTTTTTCCCCCTTTCCGGCCATTTTTTTTGTCCCCTATCCCAAATAGG
GGGAAAA
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