EY744234

Overview
NameEY744234
Unique NameEY744234
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length476
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744234 vs. ExPASy Swiss-Prot
Match: H2BWT_HUMAN (Histone H2B type W-T OS=Homo sapiens GN=H2BFWT PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.306e-16
Identity = 41/92 (44.57%), Postives = 66/92 (71.74%), Query Frame = 2
Query:    2 HASETVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 277
            H++   +++  Y  +VLKQVH  + +S +A+ +M+S ++DI +++A E+ RLAR  K+ TIT+ E + AVRL+LPG++ K A SEGTKAV +
Sbjct:   73 HSNCRGDSFATYFRRVLKQVHQGLSLSREAVSVMDSLVHDILDRIATEAGRLARSTKRQTITAWETRMAVRLLLPGQMGKLAESEGTKAVLR 164          
BLAST of EY744234 vs. ExPASy Swiss-Prot
Match: H2BFM_HUMAN (Histone H2B type F-M OS=Homo sapiens GN=H2BFM PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.909e-16
Identity = 39/86 (45.35%), Postives = 63/86 (73.26%), Query Frame = 2
Query:   20 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 277
            +++  Y  +VLKQVH  + +S +A+ +M+S I+DI +++A E+ +LA Y K+ TITSR+IQ AVRL+LPG++ K A ++GT A  +
Sbjct:  161 DSFTPYFPRVLKQVHQGLSLSQEAVSVMDSMIHDILDRIATEAGQLAHYTKRVTITSRDIQMAVRLLLPGKMGKLAEAQGTNAALR 246          
BLAST of EY744234 vs. ExPASy Swiss-Prot
Match: H2BV_BOVIN (Histone H2B subacrosomal variant OS=Bos taurus GN=SUBH2BV PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 5.486e-15
Identity = 39/87 (44.83%), Postives = 62/87 (71.26%), Query Frame = 2
Query:   17 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 277
            +  Y +YI +VLK+V P  GISS+ + I+N+ IND+FE+++ E+  L  Y K+ T+T  +I+ AV L+LP +LAK+AV+ G +AV +
Sbjct:   32 LRNYSLYINRVLKEVVPQKGISSRTIDIINTMINDMFERISTEACNLMYYRKRCTLTPEDIEKAVYLLLPEKLAKYAVAFGKEAVQR 118          
BLAST of EY744234 vs. ExPASy Swiss-Prot
Match: H2BV_MOUSE (Histone H2B subacrosomal variant OS=Mus musculus GN=Subh2bv PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 41/82 (50.00%), Postives = 58/82 (70.73%), Query Frame = 2
Query:   26 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAV 271
            Y +YI +VLK+V P+ GISS ++ IMN  INDIFE++A E+ +     K+ T+T  +IQ AV L+LP +LA  AV+ G+KAV
Sbjct:   36 YSLYINRVLKEVVPNRGISSYSVDIMNILINDIFERIATEACQQMFLRKRCTLTPGDIQQAVHLLLPKKLATLAVTFGSKAV 117          
BLAST of EY744234 vs. ExPASy Swiss-Prot
Match: H2BV1_DICDI (Histone H2B.v1 OS=Dictyostelium discoideum GN=H2Bv1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.415e-12
Identity = 34/81 (41.98%), Postives = 54/81 (66.67%), Query Frame = 2
Query:   32 IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVT 274
            IYI K++KQ++P   I  K++ I+ S I D    +  E+  L + + K T+++R++QT+VRL   GE+++HAVSEG K VT
Sbjct:   18 IYIKKLIKQINPACRIQVKSVQILTSLIRDTTISIMNEAFHLVQLSNKRTLSARDVQTSVRLCTVGEISRHAVSEGVKRVT 98          
The following BLAST results are available for this feature:
BLAST of EY744234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2BWT_HUMAN1.306e-1644.57Histone H2B type W-T OS=Homo sapiens GN=H2BFWT PE=... [more]
H2BFM_HUMAN2.909e-1645.35Histone H2B type F-M OS=Homo sapiens GN=H2BFM PE=2... [more]
H2BV_BOVIN5.486e-1544.83Histone H2B subacrosomal variant OS=Bos taurus GN=... [more]
H2BV_MOUSE1.765e-1350.00Histone H2B subacrosomal variant OS=Mus musculus G... [more]
H2BV1_DICDI7.415e-1241.98Histone H2B.v1 OS=Dictyostelium discoideum GN=H2Bv... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-D05-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744234 ID=EY744234; Name=EY744234; organism=Citrus sinensis; type=EST; length=476bp
CCACGCGTCCGAGACCGTGGAGACCTACAAGATCTACATATTCAAGGTGC
TGAAGCAGGTGCATCCTGACATAGGAATCTCCAGCAAGGCCATGGGTATC
ATGAACAGCTTTATCAACGATATCTTCGAGAAATTGGCTCAGGAGTCGTC
TCGTCTCGCGAGATACAACAAGAAGCCCACTATCACTTCTCGTGAGATCC
AGACTGCTGTTAGACTTGTCTTGCCCGGTGAGCTTGCCAAGCATGCCGTT
TCTGAAGGCACTAAGGCTGTCACTAAGTTTACTAGCTCTTAATGAACCTA
TAGCTTCAATAATTCAATTAGTATCTTCTCTTTCTAGCTTGGGCTCTGCA
ATTTTTAAGGTCCTGTTTCTTTTATTTTCCTTTTGGTTGTAGATTTTCTC
TTTTGTTTACTTTTTGTATCTACCCTACCCAACAACCTAATCGAAGTTCT
TTTTGCTCAAAAAAAAAAAAAAAAAA
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