EY744234

Overview
NameEY744234
Unique NameEY744234
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length476
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744234 vs. ExPASy Swiss-Prot
Match: H2B4_WHEAT (Histone H2B.4 OS=Triticum aestivum GN=TH153 PE=1 SV=3)

HSP 1 Score: 159.073 bits (401), Expect = 9.293e-39
Identity = 80/91 (87.91%), Postives = 87/91 (95.60%), Query Frame = 2
Query:    5 ASETVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 277
            + +++ETYKIYIFKVLKQVHPDIGISSKAM I NSFINDIFEKLA ES++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTK
Sbjct:   41 SKKSMETYKIYIFKVLKQVHPDIGISSKAMSITNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTK 131          
BLAST of EY744234 vs. ExPASy Swiss-Prot
Match: H2B4_CHLRE (Histone H2B.4 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 6.024e-38
Identity = 77/87 (88.51%), Postives = 84/87 (96.55%), Query Frame = 2
Query:   17 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 277
            VETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A E+S+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTK
Sbjct:   63 VETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTK 149          
BLAST of EY744234 vs. ExPASy Swiss-Prot
Match: H2B3_CHLRE (Histone H2B.3 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 6.024e-38
Identity = 77/87 (88.51%), Postives = 84/87 (96.55%), Query Frame = 2
Query:   17 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 277
            VETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A E+S+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTK
Sbjct:   63 VETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTK 149          
BLAST of EY744234 vs. ExPASy Swiss-Prot
Match: H2B2_CHLRE (Histone H2B.2 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 6.024e-38
Identity = 77/87 (88.51%), Postives = 84/87 (96.55%), Query Frame = 2
Query:   17 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 277
            VETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A E+S+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTK
Sbjct:   66 VETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTK 152          
BLAST of EY744234 vs. ExPASy Swiss-Prot
Match: H2B1_CHLRE (Histone H2B.1 OS=Chlamydomonas reinhardtii GN=H2B PE=1 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 6.024e-38
Identity = 77/87 (88.51%), Postives = 84/87 (96.55%), Query Frame = 2
Query:   17 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 277
            VETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A E+S+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTK
Sbjct:   63 VETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTK 149          
BLAST of EY744234 vs. ExPASy Swiss-Prot
Match: H2B4_VOLCA (Histone H2B.4 OS=Volvox carteri PE=3 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 1.753e-37
Identity = 76/86 (88.37%), Postives = 83/86 (96.51%), Query Frame = 2
Query:   20 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 277
            ETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A E+S+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTK
Sbjct:   66 ETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTK 151          
BLAST of EY744234 vs. ExPASy Swiss-Prot
Match: H2B3_VOLCA (Histone H2B.3 OS=Volvox carteri PE=3 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 1.753e-37
Identity = 76/86 (88.37%), Postives = 83/86 (96.51%), Query Frame = 2
Query:   20 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 277
            ETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A E+S+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTK
Sbjct:   68 ETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTK 153          
BLAST of EY744234 vs. ExPASy Swiss-Prot
Match: H2B_SALTR (Histone H2B OS=Salmo trutta PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 1.256e-35
Identity = 73/86 (84.88%), Postives = 81/86 (94.19%), Query Frame = 2
Query:   20 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 277
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A ESSRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   34 ESYAIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 119          
BLAST of EY744234 vs. ExPASy Swiss-Prot
Match: H2B_PEA (Histone H2B (Fragments) OS=Pisum sativum GN=HIS2B PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 1.256e-35
Identity = 76/85 (89.41%), Postives = 79/85 (92.94%), Query Frame = 2
Query:   23 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 277
            T KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA E+SRLARYNKK TIT REIQTAVRL+LPGE+AKH VSE TKAVTK
Sbjct:   31 TVKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASEASRLARYNKKSTITPREIQTAVRLLLPGEVAKHKVSEATKAVTK 115          
BLAST of EY744234 vs. ExPASy Swiss-Prot
Match: H2B_ONCMY (Histone H2B OS=Oncorhynchus mykiss PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 1.256e-35
Identity = 73/86 (84.88%), Postives = 81/86 (94.19%), Query Frame = 2
Query:   20 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 277
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A ESSRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   34 ESYAIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 119          
The following BLAST results are available for this feature:
BLAST of EY744234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B4_WHEAT9.293e-3987.91Histone H2B.4 OS=Triticum aestivum GN=TH153 PE=1 S... [more]
H2B4_CHLRE6.024e-3888.51Histone H2B.4 OS=Chlamydomonas reinhardtii PE=1 SV... [more]
H2B3_CHLRE6.024e-3888.51Histone H2B.3 OS=Chlamydomonas reinhardtii PE=1 SV... [more]
H2B2_CHLRE6.024e-3888.51Histone H2B.2 OS=Chlamydomonas reinhardtii PE=1 SV... [more]
H2B1_CHLRE6.024e-3888.51Histone H2B.1 OS=Chlamydomonas reinhardtii GN=H2B ... [more]
H2B4_VOLCA1.753e-3788.37Histone H2B.4 OS=Volvox carteri PE=3 SV=3[more]
H2B3_VOLCA1.753e-3788.37Histone H2B.3 OS=Volvox carteri PE=3 SV=3[more]
H2B_SALTR1.256e-3584.88Histone H2B OS=Salmo trutta PE=1 SV=2[more]
H2B_PEA1.256e-3589.41Histone H2B (Fragments) OS=Pisum sativum GN=HIS2B ... [more]
H2B_ONCMY1.256e-3584.88Histone H2B OS=Oncorhynchus mykiss PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-D05-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744234 ID=EY744234; Name=EY744234; organism=Citrus sinensis; type=EST; length=476bp
CCACGCGTCCGAGACCGTGGAGACCTACAAGATCTACATATTCAAGGTGC
TGAAGCAGGTGCATCCTGACATAGGAATCTCCAGCAAGGCCATGGGTATC
ATGAACAGCTTTATCAACGATATCTTCGAGAAATTGGCTCAGGAGTCGTC
TCGTCTCGCGAGATACAACAAGAAGCCCACTATCACTTCTCGTGAGATCC
AGACTGCTGTTAGACTTGTCTTGCCCGGTGAGCTTGCCAAGCATGCCGTT
TCTGAAGGCACTAAGGCTGTCACTAAGTTTACTAGCTCTTAATGAACCTA
TAGCTTCAATAATTCAATTAGTATCTTCTCTTTCTAGCTTGGGCTCTGCA
ATTTTTAAGGTCCTGTTTCTTTTATTTTCCTTTTGGTTGTAGATTTTCTC
TTTTGTTTACTTTTTGTATCTACCCTACCCAACAACCTAATCGAAGTTCT
TTTTGCTCAAAAAAAAAAAAAAAAAA
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