EY744234 | Citrus Genome Database

Overview


Name	EY744234
Unique Name	EY744234
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	476

Libraries


Library Name	Type
Sweet orange flower, greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY744234 vs. ExPASy Swiss-Prot
Match: H2B3B_MOUSE (Histone H2B type 3-B OS=Mus musculus GN=Hist3h2bb PE=1 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 1.640e-35
Identity = 71/86 (82.56%), Postives = 81/86 (94.19%), Query Frame = 2

Query:   20 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 277
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTK 121

[Close]

BLAST of EY744234 vs. ExPASy Swiss-Prot
Match: H2B3B_HUMAN (Histone H2B type 3-B OS=Homo sapiens GN=HIST3H2BB PE=1 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 1.640e-35
Identity = 71/86 (82.56%), Postives = 81/86 (94.19%), Query Frame = 2

Query:   20 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 277
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTK 121

[Close]

BLAST of EY744234 vs. ExPASy Swiss-Prot
Match: H2B3A_MOUSE (Histone H2B type 3-A OS=Mus musculus GN=Hist3h2ba PE=1 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 1.640e-35
Identity = 71/86 (82.56%), Postives = 81/86 (94.19%), Query Frame = 2

Query:   20 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 277
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTK 121

[Close]

BLAST of EY744234 vs. ExPASy Swiss-Prot
Match: H2B1P_MOUSE (Histone H2B type 1-P OS=Mus musculus GN=Hist1h2bp PE=1 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 1.640e-35
Identity = 71/86 (82.56%), Postives = 81/86 (94.19%), Query Frame = 2

Query:   20 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 277
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121

[Close]

BLAST of EY744234 vs. ExPASy Swiss-Prot
Match: H2B1L_HUMAN (Histone H2B type 1-L OS=Homo sapiens GN=HIST1H2BL PE=1 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 1.640e-35
Identity = 71/86 (82.56%), Postives = 81/86 (94.19%), Query Frame = 2

Query:   20 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 277
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121

[Close]

BLAST of EY744234 vs. ExPASy Swiss-Prot
Match: H2B1K_MOUSE (Histone H2B type 1-K OS=Mus musculus GN=Hist1h2bk PE=1 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 1.640e-35
Identity = 71/86 (82.56%), Postives = 81/86 (94.19%), Query Frame = 2

Query:   20 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 277
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121

[Close]

BLAST of EY744234 vs. ExPASy Swiss-Prot
Match: H2B1F_MOUSE (Histone H2B type 1-F/J/L OS=Mus musculus GN=Hist1h2bf PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 1.640e-35
Identity = 71/86 (82.56%), Postives = 81/86 (94.19%), Query Frame = 2

Query:   20 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 277
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121

[Close]

BLAST of EY744234 vs. ExPASy Swiss-Prot
Match: H2B1B_MOUSE (Histone H2B type 1-B OS=Mus musculus GN=Hist1h2bb PE=1 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 1.640e-35
Identity = 71/86 (82.56%), Postives = 81/86 (94.19%), Query Frame = 2

Query:   20 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 277
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121

[Close]

BLAST of EY744234 vs. ExPASy Swiss-Prot
Match: H2B8_CHICK (Histone H2B 8 OS=Gallus gallus GN=H2B-VIII PE=1 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 2.142e-35
Identity = 72/86 (83.72%), Postives = 81/86 (94.19%), Query Frame = 2

Query:   20 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 277
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121

[Close]

BLAST of EY744234 vs. ExPASy Swiss-Prot
Match: H2B5_CHICK (Histone H2B 5 OS=Gallus gallus GN=H2B-V PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 2.142e-35
Identity = 72/86 (83.72%), Postives = 81/86 (94.19%), Query Frame = 2

Query:   20 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 277
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121

The following BLAST results are available for this feature:

BLAST of EY744234 vs. ExPASy Swiss-Prot

BLAST of EY744234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205


Match Name	E-value	Identity	Description
H2B3B_MOUSE	1.640e-35	82.56	Histone H2B type 3-B OS=Mus musculus GN=Hist3h2bb ...	[more]
H2B3B_HUMAN	1.640e-35	82.56	Histone H2B type 3-B OS=Homo sapiens GN=HIST3H2BB ...	[more]
H2B3A_MOUSE	1.640e-35	82.56	Histone H2B type 3-A OS=Mus musculus GN=Hist3h2ba ...	[more]
H2B1P_MOUSE	1.640e-35	82.56	Histone H2B type 1-P OS=Mus musculus GN=Hist1h2bp ...	[more]
H2B1L_HUMAN	1.640e-35	82.56	Histone H2B type 1-L OS=Homo sapiens GN=HIST1H2BL ...	[more]
H2B1K_MOUSE	1.640e-35	82.56	Histone H2B type 1-K OS=Mus musculus GN=Hist1h2bk ...	[more]
H2B1F_MOUSE	1.640e-35	82.56	Histone H2B type 1-F/J/L OS=Mus musculus GN=Hist1h...	[more]
H2B1B_MOUSE	1.640e-35	82.56	Histone H2B type 1-B OS=Mus musculus GN=Hist1h2bb ...	[more]
H2B8_CHICK	2.142e-35	83.72	Histone H2B 8 OS=Gallus gallus GN=H2B-VIII PE=1 SV...	[more]
H2B5_CHICK	2.142e-35	83.72	Histone H2B 5 OS=Gallus gallus GN=H2B-V PE=1 SV=2	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C5-003-001-D05-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY744234 ID=EY744234; Name=EY744234; organism=Citrus sinensis; type=EST; length=476bp
CCACGCGTCCGAGACCGTGGAGACCTACAAGATCTACATATTCAAGGTGC
TGAAGCAGGTGCATCCTGACATAGGAATCTCCAGCAAGGCCATGGGTATC
ATGAACAGCTTTATCAACGATATCTTCGAGAAATTGGCTCAGGAGTCGTC
TCGTCTCGCGAGATACAACAAGAAGCCCACTATCACTTCTCGTGAGATCC
AGACTGCTGTTAGACTTGTCTTGCCCGGTGAGCTTGCCAAGCATGCCGTT
TCTGAAGGCACTAAGGCTGTCACTAAGTTTACTAGCTCTTAATGAACCTA
TAGCTTCAATAATTCAATTAGTATCTTCTCTTTCTAGCTTGGGCTCTGCA
ATTTTTAAGGTCCTGTTTCTTTTATTTTCCTTTTGGTTGTAGATTTTCTC
TTTTGTTTACTTTTTGTATCTACCCTACCCAACAACCTAATCGAAGTTCT
TTTTGCTCAAAAAAAAAAAAAAAAAA