EY744227

Overview
NameEY744227
Unique NameEY744227
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744227 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.643e-19
Identity = 44/76 (57.89%), Postives = 58/76 (76.32%), Query Frame = 1
Query:   34 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGILPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 261
            M I VKTLTGK I +++E +D +D +K ++++KEGI P QQRLIF+GKQ+ D +T ADY +Q  S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGG 76          
BLAST of EY744227 vs. ExPASy Swiss-Prot
Match: RS27A_CHICK (40S ribosomal protein S27a OS=Gallus gallus GN=RPS27A PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.703e-18
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 1
Query:  331 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 489
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FMA+HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSEECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
BLAST of EY744227 vs. ExPASy Swiss-Prot
Match: RS27A_HUMAN (40S ribosomal protein S27a OS=Homo sapiens GN=RPS27A PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.224e-18
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 1
Query:  331 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 489
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FMA+HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
BLAST of EY744227 vs. ExPASy Swiss-Prot
Match: RS27A_CAVPO (40S ribosomal protein S27a OS=Cavia porcellus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.224e-18
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 1
Query:  331 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 489
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FMA+HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
BLAST of EY744227 vs. ExPASy Swiss-Prot
Match: RS27A_BOVIN (40S ribosomal protein S27a OS=Bos taurus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.224e-18
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 1
Query:  331 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 489
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FMA+HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
BLAST of EY744227 vs. ExPASy Swiss-Prot
Match: NEDD8_CAEEL (NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.224e-18
Identity = 45/76 (59.21%), Postives = 57/76 (75.00%), Query Frame = 1
Query:   34 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGILPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 261
            M I VKTLTGK I L++E +D ++ +K K+++KEGI P QQRLIFAGKQ+ D +T ADY +   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALRGG 76          
BLAST of EY744227 vs. ExPASy Swiss-Prot
Match: RUB2_ARATH (NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 4.954e-18
Identity = 45/74 (60.81%), Postives = 57/74 (77.03%), Query Frame = 1
Query:   40 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGILPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 261
            I VKTLTGK I +++E +DTID +K ++++KEGI P QQRLI+AGKQL D +T  DY I+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLVLALRGG 76          
BLAST of EY744227 vs. ExPASy Swiss-Prot
Match: RS27A_ICTPU (40S ribosomal protein S27a OS=Ictalurus punctatus GN=rps27a PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.954e-18
Identity = 38/53 (71.70%), Postives = 46/53 (86.79%), Query Frame = 1
Query:  331 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 489
            LAVL++YKVD++GK+ RLR+ECP  ECGAG FMA+HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKIHRLRRECPADECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
BLAST of EY744227 vs. ExPASy Swiss-Prot
Match: RS27A_RAT (40S ribosomal protein S27a OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.470e-18
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 1
Query:  331 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 489
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FM +HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNK 76          
BLAST of EY744227 vs. ExPASy Swiss-Prot
Match: RS27A_MOUSE (40S ribosomal protein S27a OS=Mus musculus GN=Rps27a PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.470e-18
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 1
Query:  331 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 489
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FM +HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNK 76          
The following BLAST results are available for this feature:
BLAST of EY744227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
NEDD8_DROME7.643e-1957.89NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=... [more]
RS27A_CHICK1.703e-1871.7040S ribosomal protein S27a OS=Gallus gallus GN=RPS... [more]
RS27A_HUMAN2.224e-1871.7040S ribosomal protein S27a OS=Homo sapiens GN=RPS2... [more]
RS27A_CAVPO2.224e-1871.7040S ribosomal protein S27a OS=Cavia porcellus GN=R... [more]
RS27A_BOVIN2.224e-1871.7040S ribosomal protein S27a OS=Bos taurus GN=RPS27A... [more]
NEDD8_CAEEL2.224e-1859.21NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1[more]
RUB2_ARATH4.954e-1860.81NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN... [more]
RS27A_ICTPU4.954e-1871.7040S ribosomal protein S27a OS=Ictalurus punctatus ... [more]
RS27A_RAT6.470e-1869.8140S ribosomal protein S27a OS=Rattus norvegicus GN... [more]
RS27A_MOUSE6.470e-1869.8140S ribosomal protein S27a OS=Mus musculus GN=Rps2... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-C09-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744227 ID=EY744227; Name=EY744227; organism=Citrus sinensis; type=EST; length=913bp
TGAAATTTGCTGGGTCTCTCCTCATCTGCAGCCATGCAGATCTTCGTGAA
AACCCTAACGGGAAAGACCATAACCCTAGAGGTCGAATCATCGGACACCA
TCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATTCTACCGGAC
CAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGAACCCT
AGCCGACTACAACATCCAAAAGGAGTCAACACTCCACCTCGTCCTCCGTC
TCCGTGGTGGCGCGAAGAAGCGTAAGAAGAAGACCTACACCAAGCCGAAA
AAGATCAAGCACAAGAAGAAGAAGGTCAAGCTCGCCGTCTTGCAGTTTTA
CAAGGTCGATGATTCTGGAAAGGTCCAGAGGCTGAGGAAGGAGTGTCCGA
ATGCTGAGTGTGGAGCCGGCACCTTCATGGCTAACCACTTTGACAGGCAC
TACTGCGGCAAGTGTGGACTCACCTATGTTTACCAGAAGGCTGGCGGTGA
TTGATTCAAATTAGGTGGTTTGTTTTGCTTATTTTAATTAGTATTAATTA
CTATGGGTTTTTGTGGTTCAAAAATTAAGACTCTTTTCTAATTTTTGTTT
GAACTAAAACTTGTTTGGCTTGAACCGTTTTAATTTAAATGGTTACCTGT
TTTTAATTTTAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAGAA
AAATGGGGGGGGCCGCTCATTAAGAATCCAGTCTAATCTACGCCCGGGCG
TGCGAATTTTCTAATTTTCTTTTATTTGTGGTCACCCTAAATTTTAATTC
TATGGGCGCTGTTGTTTTTTAAAAGTAGGGGGAAGGGGGGAAAAACCCCC
GGTGTGGTTTTCCCCCAACATTTTTTCCCTCCTTGTGATACACTCAATCC
CCCCCCCTTTTTC
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