EY744219

Overview
NameEY744219
Unique NameEY744219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_PASMU (50S ribosomal protein L13 OS=Pasteurella multocida GN=rplM PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.316e-23
Identity = 51/116 (43.97%), Postives = 71/116 (61.21%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 602
            W V DA G+ LGRLA+++A  ++GK K  Y P+ D GD  IV+NA+ + VTG K  +K+Y+WHTGY+G +K+ T KE + R P   I  AV  MLP+            ++ GSEH
Sbjct:   15 WYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVINAEKVAVTGNKESDKLYHWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMYRKLKVYAGSEH 130          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_LACPL (50S ribosomal protein L13 OS=Lactobacillus plantarum GN=rplM PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.316e-23
Identity = 50/117 (42.74%), Postives = 74/117 (63.25%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 602
            +W V DA    LGRL++ VA++++GK+KPT+ PN D GD  IV+NA  + +TG+K + K+YY HT Y G LKERT  + + ++PT+ I  +V  MLP N           ++ G+EH
Sbjct:   15 KWYVVDATDVPLGRLSTVVASILRGKNKPTFTPNVDTGDNVIVINASKVALTGKKAERKIYYHHTAYAGGLKERTAGDFLAKEPTKLIETSVKGMLPHNSLGHKMGLKLHVYAGAEH 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_GEOSL (50S ribosomal protein L13 OS=Geobacter sulfurreducens GN=rplM PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.316e-23
Identity = 51/126 (40.48%), Postives = 77/126 (61.11%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP*TI 632
            W + DA  +VLGR+A+++A +++GK KP Y P+ D GD  +V+NA  + +TG KL +K+YY HTG+ G +K  T  + +E+ P + IRKAV  MLP+N           ++ G EHP     P T+
Sbjct:   16 WYLVDADNKVLGRMATEIANILRGKKKPIYTPSVDTGDFVVVVNAAKLQLTGNKLADKMYYHHTGFPGGIKSITAGKLIEKKPEDLIRKAVKGMLPKNKLARHMLKKLKVYAGPEHPHEAQQPKTL 141          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_DICTD (50S ribosomal protein L13 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rplM PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.316e-23
Identity = 57/140 (40.71%), Postives = 80/140 (57.14%), Query Frame = 3
Query:  204 MKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP 623
            MK  +A    I  E   W V DAKG+VLGRLAS++A +++GK KP Y P+ D GD  IV+NAKD+ +TG+K   K+Y++H+GY G  +  T ++   + P + I  AV  MLP+            I+ G EHP     P
Sbjct:    1 MKTFMAKKEEIKRE---WYVVDAKGKVLGRLASEIAKILRGKHKPIYTPHVDTGDFVIVVNAKDVVLTGKKEDQKIYFFHSGYPGGHRLITARDMRAKSPEKMIYLAVKGMLPKGPLGRKMLKKLKIYAGPEHPHQAQKP 137          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_DICT6 (50S ribosomal protein L13 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rplM PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.316e-23
Identity = 56/140 (40.00%), Postives = 81/140 (57.86%), Query Frame = 3
Query:  204 MKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP 623
            MK  +A    I  E   W V DAKG+VLGRLAS++A +++GK KP Y P+ D GD  IV+NAKD+ +TG+K + K+Y++H+GY G  +  + K+   + P + I  AV  MLP+            ++ G EHP     P
Sbjct:    1 MKTFMAKKEEIKRE---WYVVDAKGKVLGRLASEIAKILRGKHKPIYTPHVDTGDFVIVVNAKDVVLTGKKEQQKIYFFHSGYPGGHRLISAKDMRAKSPEKMIYLAVKGMLPKGPLGRKMLKKLKVYAGPEHPHQAQKP 137          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_BACWK (50S ribosomal protein L13 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rplM PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.316e-23
Identity = 50/124 (40.32%), Postives = 76/124 (61.29%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP 623
            +W V DA+GQ LGRL+++VA++++GK KPT+ P+ D GD  I++NA+ I +TG KL +K+YY HT + G LK+RT  E     P + +  A+  MLP+            ++ G+EHP     P
Sbjct:   15 KWYVVDAEGQTLGRLSTEVASILRGKHKPTFTPHVDTGDHVIIINAEKIHLTGNKLNDKIYYRHTNHPGGLKQRTALEMRTNYPVQMLELAIKGMLPKGRLGRQVSKKLNVYAGAEHPHQAQQP 138          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_SYNY3 (50S ribosomal protein L13 OS=Synechocystis sp. (strain PCC 6803) GN=rplM PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.555e-23
Identity = 53/127 (41.73%), Postives = 77/127 (60.63%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP*TI 632
            +W V DA+GQ LGRLA++VAT+++GK+KPT+ P+ D GD  I++NA+ I VTGRK + K+Y  H+G  G +KE T ++   R P   +  AV  MLP+N           ++ G  HP     P T+
Sbjct:   15 KWYVIDAEGQRLGRLATEVATILRGKNKPTFTPHMDTGDFVIIINAEKIEVTGRKREQKLYRRHSGRPGGMKEETFEKLQVRLPERIVESAVRGMLPKNSLGRKLFTKLKVYAGPSHPHAAQQPETL 141          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_STRM5 (50S ribosomal protein L13 OS=Stenotrophomonas maltophilia (strain R551-3) GN=rplM PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.555e-23
Identity = 50/117 (42.74%), Postives = 75/117 (64.10%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W + DA+G+ LGRL +++A  ++GK KP Y P+ D GD  +V+NA+ I VTG+KL++K+Y+  TGYIG+LK  +L + +ER P   I  AV  MLP+            ++ G+EHP
Sbjct:   15 WYLVDAEGKTLGRLCTELARRLRGKHKPVYTPHVDTGDYLVVINAEKIVVTGKKLQDKMYHRFTGYIGNLKTESLAQALERHPERVIETAVKGMLPKGPLGRQMYRKLKVYAGTEHP 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_RUTMC (50S ribosomal protein L13 OS=Ruthia magnifica subsp. Calyptogena magnifica GN=rplM PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.555e-23
Identity = 49/116 (42.24%), Postives = 71/116 (61.21%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 602
            W + DA G++LGR A+Q+A+ ++GK KP Y P+ D GD  +++NA  I VTG K ++K+Y+ HTGY+G+LK    K+   + P E I K V  MLP+            +F GSEH
Sbjct:   15 WLLVDADGKILGRFATQIASRLRGKHKPEYTPHTDTGDYIVIINASKIKVTGNKFEDKMYHHHTGYVGNLKSIAFKDLQAKKPEEIINKVVKGMLPKGPLGRDMFRKMKVFAGSEH 130          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_RHOSK (50S ribosomal protein L13 OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=rplM PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.555e-23
Identity = 56/133 (42.11%), Postives = 81/133 (60.90%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP*TIRDASS 647
            +W + DA+G VLGRLA+ VA +++GK+KPT+ P+ D GD  IV+NA  + +TG K  +K YYWHTG+ G +K RT ++ +E   P   + KAV RM+ RN           ++ G+EHP     P T+ D  S
Sbjct:   14 KWILIDAEGVVLGRLATIVANILRGKNKPTFTPHMDMGDNVIVINADKVQMTGNKRADKRYYWHTGHPGGVKFRTAEQVLEGAHPERVVLKAVERMISRNSLGRQQMTNLRVYAGAEHPHEAQQP-TVLDVKS 145          
The following BLAST results are available for this feature:
BLAST of EY744219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_PASMU7.316e-2343.9750S ribosomal protein L13 OS=Pasteurella multocida... [more]
RL13_LACPL7.316e-2342.7450S ribosomal protein L13 OS=Lactobacillus plantar... [more]
RL13_GEOSL7.316e-2340.4850S ribosomal protein L13 OS=Geobacter sulfurreduc... [more]
RL13_DICTD7.316e-2340.7150S ribosomal protein L13 OS=Dictyoglomus turgidum... [more]
RL13_DICT67.316e-2340.0050S ribosomal protein L13 OS=Dictyoglomus thermoph... [more]
RL13_BACWK7.316e-2340.3250S ribosomal protein L13 OS=Bacillus weihenstepha... [more]
RL13_SYNY39.555e-2341.7350S ribosomal protein L13 OS=Synechocystis sp. (st... [more]
RL13_STRM59.555e-2342.7450S ribosomal protein L13 OS=Stenotrophomonas malt... [more]
RL13_RUTMC9.555e-2342.2450S ribosomal protein L13 OS=Ruthia magnifica subs... [more]
RL13_RHOSK9.555e-2342.1150S ribosomal protein L13 OS=Rhodobacter sphaeroid... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-C01-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744219 ID=EY744219; Name=EY744219; organism=Citrus sinensis; type=EST; length=820bp
ATAAACCATACTCTTAGGGTTTACGCAGGGCCATCTCTAACTTTTGTTAT
TATTATTATTTGAATGTCCTTTACTTTTGATTTTGGGTTGTAATTTGAAT
ATAGCTCTGAATTTGATTTGCGTTACTCATTTTTGTTTAAAAGAAGTTAT
AACAGAGCAATAGAAAAATGGCAAACCAAGCAGCCACAGCTTTCAGTGGC
AACATGAAGAAAGCGCTTGCTGGGCTGAGGCGAATCAATCTAGAAGGTCT
ACGATGGAGAGTTTTTGATGCTAAAGGCCAGGTCCTTGGGAGATTAGCAT
CTCAGGTAGCTACTGTCGTTCAAGGCAAGGATAAGCCTACGTACGCTCCT
AATCGTGATGATGGTGATATGTGCATTGTGCTTAATGCAAAAGATATATG
TGTTACTGGGAGGAAACTTAAAAATAAGGTTTACTACTGGCATACCGGGT
ATATAGGCCACCTCAAGGAAAGGACCTTAAAAGAACAGATGGAGAGGGAC
CCTACAGAAGCCATTCGTAAAGCTGTCTTACGCATGCTTCCAAGAAATAA
ATTACGTGATGATAGAGATCGAAAACTGAGGATTTTTCCTGGAAGCGAGC
ACCCTTTTTGGCGACCGGCCCCCTGAACCATACGTGATGCCTCCTCGACG
TGGTAGAGAACTGCGACCTCGGGTTAGAAGAGCCATGATTAAAAGAACAA
AAAAAGGCGGAAAAGCAGCCAAATAACCAGGGATTGAGGAAAAACAAAAA
GAAAAAATTTGAAAACAAAATGGCTGGCCTGAAAATTTTGGTGGGGGCCC
CTTTTGGTTTTGAAAAGGGA
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