EY744219

Overview
NameEY744219
Unique NameEY744219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_SPICI (50S ribosomal protein L13 OS=Spiroplasma citri GN=rplM PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.129e-22
Identity = 51/118 (43.22%), Postives = 74/118 (62.71%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W V DA+G VLGRLAS+VA +++GK+KP+Y P+ D GD  I+LNA  I ++G KLK K+YY H+ + G LK  T K  + + P   +  A+  MLP+N           ++ G+EHP
Sbjct:   15 KWYVIDAQGLVLGRLASKVAMILRGKNKPSYTPHVDCGDNVIILNADKINLSGNKLKGKMYYHHSQHPGGLKRTTAKNMLVKKPIYPVEHAIKGMLPKNKLGSKLFRNLFVYAGNEHP 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_RHOE4 (50S ribosomal protein L13 OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=rplM PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.129e-22
Identity = 49/123 (39.84%), Postives = 72/123 (58.54%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP 623
            W V DA   VLGRLA Q A +++GK KPTYAP+ D GD  +++NA+ + ++G KL+ K  Y H+G+ G LK RT+ E ++R P   + KA++ MLP+            ++ G  HP     P
Sbjct:   15 WHVIDATDVVLGRLAVQAANLLRGKHKPTYAPHIDGGDFVVIINAEKVAISGNKLQGKNVYHHSGFPGGLKSRTVGEVLDRTPDRLVEKAIVGMLPKTKLGRAMSSKLKVYAGPNHPHTAQQP 137          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_METPB (50S ribosomal protein L13 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=rplM PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.129e-22
Identity = 58/119 (48.74%), Postives = 72/119 (60.50%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W V DA+G V+GRLAS VA  ++GK K  Y P+ D GD  IV+NA  +  TGRK   KVYY HTGY G +KER+ K  +E R P   + KAV RMLPR            ++ GSEHP
Sbjct:   14 KWVVIDAEGLVVGRLASIVAMRLRGKHKAAYTPHVDCGDHVIVINADKVKFTGRKYDQKVYYHHTGYPGGIKERSAKFILEGRFPERVVEKAVERMLPRGPLFRQILGHLRVYKGSEHP 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_FRATF (50S ribosomal protein L13 OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=rplM PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.129e-22
Identity = 51/123 (41.46%), Postives = 71/123 (57.72%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP 623
            W + DA  + LGRLA++VA +++GK+KP Y P+ D GD  +++NA+ I VTG K K K YY HTGYIG +K  + ++ +   P  AI KAV  MLPR            ++ G  HP     P
Sbjct:   15 WLLIDATDKTLGRLATEVAMILRGKNKPEYTPHMDTGDYVVIVNAEKIAVTGNKRKAKTYYHHTGYIGGIKSVSFEKLIATHPERAIEKAVRGMLPRTPLGRTMFKKLKVYAGEAHPHTAQQP 137          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_ALCBS (50S ribosomal protein L13 OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=rplM PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.129e-22
Identity = 52/123 (42.28%), Postives = 70/123 (56.91%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP 623
            W V DA G+ LGRLA++VA+ ++GK KP + P+ D GD  +V+NA  + VTG+K  +K+YY HTGY G LKE          P   I KA+  MLPRN           ++ G+EHP     P
Sbjct:   15 WYVVDASGKTLGRLATEVASRLRGKHKPEFTPHVDTGDYIVVINADKVAVTGKKASDKMYYRHTGYPGGLKEANFATLQAEKPEMIIEKAIKGMLPRNPLGRAMFRKLKVYAGTEHPHTAQQP 137          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_PELTS (50S ribosomal protein L13 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rplM PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.780e-22
Identity = 50/129 (38.76%), Postives = 79/129 (61.24%), Query Frame = 3
Query:  237 NLEGLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP 623
            +++  +W V DA+G+VLGRLA++ A +++GK KP + P+ D GD  IV+NA+ + +TG+KL++K Y  H+GY G LK    ++ M+  P  A+ KA++ MLP N           ++ G EHP     P
Sbjct:   10 DIKNRKWYVLDAEGKVLGRLAAEAARILRGKHKPDFTPHVDTGDHVIVINAEKVVLTGKKLRDKKYIRHSGYPGGLKVMNYEKLMKTRPELAVEKAIVGMLPHNRLGSRMAKKLKVYRGPEHPHQAQKP 138          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_MYCUA (50S ribosomal protein L13 OS=Mycobacterium ulcerans (strain Agy99) GN=rplM PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.780e-22
Identity = 51/123 (41.46%), Postives = 72/123 (58.54%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP 623
            W V DA   VLGRLA   A +++GK KPT+APN D GD  IV+NA  + ++  KL+NK  Y H+GY G L++R++ E ME+ P   + KA++ MLP+N           ++ G  HP     P
Sbjct:   15 WYVIDATDVVLGRLAVAAANLLRGKHKPTFAPNVDGGDFVIVINADKVAISNEKLRNKRAYSHSGYPGGLRKRSIGELMEKHPDRVVEKAIVGMLPKNKLSRQIQSKLRVYAGPGHPHTAQQP 137          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_METEP (50S ribosomal protein L13 OS=Methylobacterium extorquens (strain PA1) GN=rplM PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.780e-22
Identity = 57/119 (47.90%), Postives = 72/119 (60.50%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W V DA+G V+GRLAS VA  ++GK KP Y P+ D GD  IV+NA  +  TGRK   KVYY HTGY G +KER+ K  +E R P   + KAV RMLPR            ++ G+ HP
Sbjct:   14 KWVVIDAEGLVVGRLASIVAMRLRGKHKPAYTPHVDCGDHVIVINADKVKFTGRKYDQKVYYHHTGYPGGIKERSAKFILEGRFPERVVEKAVERMLPRGPLFRQILGHLRVYKGAAHP 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_METC4 (50S ribosomal protein L13 OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=rplM PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.780e-22
Identity = 57/119 (47.90%), Postives = 72/119 (60.50%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W V DA+G V+GRLAS VA  ++GK KP Y P+ D GD  IV+NA  +  TGRK   KVYY HTGY G +KER+ K  +E R P   + KAV RMLPR            ++ G+ HP
Sbjct:   14 KWVVIDAEGLVVGRLASIVAMRLRGKHKPAYTPHVDCGDHVIVINADKVKFTGRKYDQKVYYHHTGYPGGIKERSAKFILEGRFPERVVEKAVERMLPRGPLFRQILGHLRVYKGAAHP 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_KINRD (50S ribosomal protein L13 OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=rplM PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.780e-22
Identity = 51/118 (43.22%), Postives = 74/118 (62.71%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            RW V DA+  VLGRLASQ A +++GK K TYAP+ D GD  I++NA  + +TG K   KV Y H+GY G LK  +  + +E++P +A+ KA+  M+P+N           ++ G+EHP
Sbjct:   14 RWLVIDAEDVVLGRLASQTAILLRGKHKATYAPHVDGGDYVIIVNAAKVALTGSKRDQKVAYRHSGYPGGLKATSYVDLLEQNPEKAVEKAIRGMIPKNSLGRQVLSKLKVYAGAEHP 131          
The following BLAST results are available for this feature:
BLAST of EY744219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_SPICI2.129e-2243.2250S ribosomal protein L13 OS=Spiroplasma citri GN=... [more]
RL13_RHOE42.129e-2239.8450S ribosomal protein L13 OS=Rhodococcus erythropo... [more]
RL13_METPB2.129e-2248.7450S ribosomal protein L13 OS=Methylobacterium popu... [more]
RL13_FRATF2.129e-2241.4650S ribosomal protein L13 OS=Francisella tularensi... [more]
RL13_ALCBS2.129e-2242.2850S ribosomal protein L13 OS=Alcanivorax borkumens... [more]
RL13_PELTS2.780e-2238.7650S ribosomal protein L13 OS=Pelotomaculum thermop... [more]
RL13_MYCUA2.780e-2241.4650S ribosomal protein L13 OS=Mycobacterium ulceran... [more]
RL13_METEP2.780e-2247.9050S ribosomal protein L13 OS=Methylobacterium exto... [more]
RL13_METC42.780e-2247.9050S ribosomal protein L13 OS=Methylobacterium chlo... [more]
RL13_KINRD2.780e-2243.2250S ribosomal protein L13 OS=Kineococcus radiotole... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-C01-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744219 ID=EY744219; Name=EY744219; organism=Citrus sinensis; type=EST; length=820bp
ATAAACCATACTCTTAGGGTTTACGCAGGGCCATCTCTAACTTTTGTTAT
TATTATTATTTGAATGTCCTTTACTTTTGATTTTGGGTTGTAATTTGAAT
ATAGCTCTGAATTTGATTTGCGTTACTCATTTTTGTTTAAAAGAAGTTAT
AACAGAGCAATAGAAAAATGGCAAACCAAGCAGCCACAGCTTTCAGTGGC
AACATGAAGAAAGCGCTTGCTGGGCTGAGGCGAATCAATCTAGAAGGTCT
ACGATGGAGAGTTTTTGATGCTAAAGGCCAGGTCCTTGGGAGATTAGCAT
CTCAGGTAGCTACTGTCGTTCAAGGCAAGGATAAGCCTACGTACGCTCCT
AATCGTGATGATGGTGATATGTGCATTGTGCTTAATGCAAAAGATATATG
TGTTACTGGGAGGAAACTTAAAAATAAGGTTTACTACTGGCATACCGGGT
ATATAGGCCACCTCAAGGAAAGGACCTTAAAAGAACAGATGGAGAGGGAC
CCTACAGAAGCCATTCGTAAAGCTGTCTTACGCATGCTTCCAAGAAATAA
ATTACGTGATGATAGAGATCGAAAACTGAGGATTTTTCCTGGAAGCGAGC
ACCCTTTTTGGCGACCGGCCCCCTGAACCATACGTGATGCCTCCTCGACG
TGGTAGAGAACTGCGACCTCGGGTTAGAAGAGCCATGATTAAAAGAACAA
AAAAAGGCGGAAAAGCAGCCAAATAACCAGGGATTGAGGAAAAACAAAAA
GAAAAAATTTGAAAACAAAATGGCTGGCCTGAAAATTTTGGTGGGGGCCC
CTTTTGGTTTTGAAAAGGGA
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