EY744219

Overview
NameEY744219
Unique NameEY744219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_RHOCS (50S ribosomal protein L13 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplM PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.194e-22
Identity = 52/119 (43.70%), Postives = 75/119 (63.03%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W + DA G VLGRLASQ+A  ++GK KPTY P+ D GD  IV+NA+ + +TG K ++ ++YWHTGY G +K R+  + ++ R P   I KAV RM+PR            ++ G+ HP
Sbjct:   14 KWILIDADGLVLGRLASQIAMRLRGKHKPTYTPHMDCGDNVIVINAEKVKLTGNKRQDDIFYWHTGYPGGIKGRSKGQILDGRFPERVIIKAVERMVPRGPLGRRQMGNLRVYAGTAHP 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_MYCPA (50S ribosomal protein L13 OS=Mycobacterium paratuberculosis GN=rplM PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.194e-22
Identity = 51/123 (41.46%), Postives = 71/123 (57.72%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP 623
            W V DA   VLGRLA   A +++GK KPT+APN D GD  IV+NA  +  +G+KL  K+ Y H+GY G L+ RT+ E M++ P   +  A++ MLP+N           ++ G EHP     P
Sbjct:   15 WYVIDATDVVLGRLAVAAANLLRGKHKPTFAPNVDGGDFVIVVNADKVAFSGQKLDKKLAYRHSGYPGGLRSRTIGELMQKHPDRVVADAIVGMLPKNKLSRQIQRKLRVYAGPEHPHTAQQP 137          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_MYCA1 (50S ribosomal protein L13 OS=Mycobacterium avium (strain 104) GN=rplM PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.194e-22
Identity = 51/123 (41.46%), Postives = 71/123 (57.72%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP 623
            W V DA   VLGRLA   A +++GK KPT+APN D GD  IV+NA  +  +G+KL  K+ Y H+GY G L+ RT+ E M++ P   +  A++ MLP+N           ++ G EHP     P
Sbjct:   15 WYVIDATDVVLGRLAVAAANLLRGKHKPTFAPNVDGGDFVIVVNADKVAFSGQKLDKKLAYRHSGYPGGLRSRTIGELMQKHPDRVVADAIVGMLPKNKLSRQIQRKLRVYAGPEHPHTAQQP 137          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_BAUCH (50S ribosomal protein L13 OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=rplM PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.194e-22
Identity = 53/123 (43.09%), Postives = 74/123 (60.16%), Query Frame = 3
Query:  240 LEGLR--WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 602
            LE +R  W + DA  ++LGR AS +A  ++GK K  Y P+ D GD  IVLNAK I VTG KL +K YY +TG++G +KE+ LK+ M + P   I +AV  MLP+            ++ G+EH
Sbjct:    8 LENIRRNWYIMDASNKILGRFASNIALRLRGKHKVIYTPHIDTGDYIIVLNAKKITVTGNKLSDKKYYHYTGFVGGIKEQNLKDLMTKRPEYVIERAVKGMLPKGALGKAMLKKLKVYAGTEH 130          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_GEOKA (50S ribosomal protein L13 OS=Geobacillus kaustophilus GN=rplM PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.089e-22
Identity = 54/124 (43.55%), Postives = 73/124 (58.87%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP 623
            +W V DA G+ LGRLAS+VA +++GK KPT+ P+ D GD  IV+NA  + +TG+KL  K+YY H+ Y G LK RT  E     P + I +AV  MLP+            ++ GSEHP     P
Sbjct:   15 KWYVVDAAGKTLGRLASEVAALLRGKHKPTFTPHVDCGDHVIVINADKVELTGKKLTKKLYYRHSLYPGGLKVRTALEMRTNYPEQMIERAVRGMLPKGSLGRQMFKKLHVYRGSEHPHQAQKP 138          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_CLOCE (50S ribosomal protein L13 OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=rplM PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.089e-22
Identity = 50/117 (42.74%), Postives = 76/117 (64.96%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 602
            +W + DA+G+ LGRLAS+VA++++GK+KP + P+ D GD  IVLNA+ + +TG+KL  K++ +HT + G LKE   +  ME+ P  AI  AV  MLP+N           ++ G+EH
Sbjct:   14 KWYIIDAEGKPLGRLASEVASIIRGKNKPIFTPHVDTGDHVIVLNAEKVLLTGKKLDQKLHRYHTLHPGGLKEIKYRHLMEKHPERAIELAVKGMLPKNSLGRQMYRKLKVYRGAEH 130          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_BEUC1 (50S ribosomal protein L13 OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=rplM PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.089e-22
Identity = 53/125 (42.40%), Postives = 74/125 (59.20%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP*T 629
            W V DA   VLGRLASQVA +++GK K T+AP+ D GD  IV+NA  + +TG K + K+ Y H+GY G LK  +  E +E+ P  A+ KA+  M+P+N           ++ G+EHP     P T
Sbjct:   15 WYVIDATDVVLGRLASQVAKLLRGKHKATFAPHVDTGDFVIVVNADKVALTGNKEQQKLAYRHSGYPGGLKATSYAELLEKRPERAVEKAIRGMVPKNSLGRAQMRKLKVYAGAEHPHGAQKPQT 139          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_YERE8 (50S ribosomal protein L13 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=rplM PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.056e-21
Identity = 50/116 (43.10%), Postives = 71/116 (61.21%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 602
            W V DA G+ LGRLA+++A+ ++GK K  Y P+ D GD  IVLNA+ + VTG K  +K+YY HTG+IG +K+ T +E + R P   I  AV  MLP+            ++ G+EH
Sbjct:   15 WYVVDANGKTLGRLATELASRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKRTDKIYYRHTGHIGGIKQATFEEMIARSPERVIEIAVKGMLPKGPLGRAMYRKLKVYAGTEH 130          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_THELT (50S ribosomal protein L13 OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=rplM PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.056e-21
Identity = 49/120 (40.83%), Postives = 74/120 (61.67%), Query Frame = 3
Query:  246 GLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            G +W V DA G+VLGRLASQ+A  + GK++PT+ P  D+G+  +V+NA  + +TG+KL  K+YY ++GY G LK+ T ++ +E+ P   I  AV RMLP+            ++    HP
Sbjct:   17 GKKWFVVDASGKVLGRLASQIAKYLMGKNEPTFFPGVDNGNYVVVINADKVLLTGKKLDKKMYYHYSGYPGGLKQLTARQLLEKHPERLIYLAVKRMLPKAALGTKYLKRLKVYASDSHP 136          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_SACD2 (50S ribosomal protein L13 OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=rplM PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.056e-21
Identity = 48/123 (39.02%), Postives = 75/123 (60.98%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP 623
            W + DA G+ LGR+A+++A  ++GK KP + P+ D GD  +V+NA+ + VTGRK  +K+YY HTG+IG +K  + ++ +++ P   I+ AV  MLPR            ++ GSEHP     P
Sbjct:   15 WYIIDADGKTLGRMAAEIAHRLRGKHKPEFTPHVDTGDYIVVINAEKVRVTGRKATDKMYYSHTGFIGGIKSISFEKLIDKAPERTIQNAVKGMLPRGPLGRAMFKKLKVYGGSEHPHTAQQP 137          
The following BLAST results are available for this feature:
BLAST of EY744219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_RHOCS6.194e-2243.7050S ribosomal protein L13 OS=Rhodospirillum centen... [more]
RL13_MYCPA6.194e-2241.4650S ribosomal protein L13 OS=Mycobacterium paratub... [more]
RL13_MYCA16.194e-2241.4650S ribosomal protein L13 OS=Mycobacterium avium (... [more]
RL13_BAUCH6.194e-2243.0950S ribosomal protein L13 OS=Baumannia cicadellini... [more]
RL13_GEOKA8.089e-2243.5550S ribosomal protein L13 OS=Geobacillus kaustophi... [more]
RL13_CLOCE8.089e-2242.7450S ribosomal protein L13 OS=Clostridium celluloly... [more]
RL13_BEUC18.089e-2242.4050S ribosomal protein L13 OS=Beutenbergia cavernae... [more]
RL13_YERE81.056e-2143.1050S ribosomal protein L13 OS=Yersinia enterocoliti... [more]
RL13_THELT1.056e-2140.8350S ribosomal protein L13 OS=Thermotoga lettingae ... [more]
RL13_SACD21.056e-2139.0250S ribosomal protein L13 OS=Saccharophagus degrad... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-C01-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744219 ID=EY744219; Name=EY744219; organism=Citrus sinensis; type=EST; length=820bp
ATAAACCATACTCTTAGGGTTTACGCAGGGCCATCTCTAACTTTTGTTAT
TATTATTATTTGAATGTCCTTTACTTTTGATTTTGGGTTGTAATTTGAAT
ATAGCTCTGAATTTGATTTGCGTTACTCATTTTTGTTTAAAAGAAGTTAT
AACAGAGCAATAGAAAAATGGCAAACCAAGCAGCCACAGCTTTCAGTGGC
AACATGAAGAAAGCGCTTGCTGGGCTGAGGCGAATCAATCTAGAAGGTCT
ACGATGGAGAGTTTTTGATGCTAAAGGCCAGGTCCTTGGGAGATTAGCAT
CTCAGGTAGCTACTGTCGTTCAAGGCAAGGATAAGCCTACGTACGCTCCT
AATCGTGATGATGGTGATATGTGCATTGTGCTTAATGCAAAAGATATATG
TGTTACTGGGAGGAAACTTAAAAATAAGGTTTACTACTGGCATACCGGGT
ATATAGGCCACCTCAAGGAAAGGACCTTAAAAGAACAGATGGAGAGGGAC
CCTACAGAAGCCATTCGTAAAGCTGTCTTACGCATGCTTCCAAGAAATAA
ATTACGTGATGATAGAGATCGAAAACTGAGGATTTTTCCTGGAAGCGAGC
ACCCTTTTTGGCGACCGGCCCCCTGAACCATACGTGATGCCTCCTCGACG
TGGTAGAGAACTGCGACCTCGGGTTAGAAGAGCCATGATTAAAAGAACAA
AAAAAGGCGGAAAAGCAGCCAAATAACCAGGGATTGAGGAAAAACAAAAA
GAAAAAATTTGAAAACAAAATGGCTGGCCTGAAAATTTTGGTGGGGGCCC
CTTTTGGTTTTGAAAAGGGA
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