EY744219

Overview
NameEY744219
Unique NameEY744219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY744219_ssr47 microsatellite EY744219_ssr47:47..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_DESVH (50S ribosomal protein L13 OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=rplM PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.474e-23
Identity = 52/117 (44.44%), Postives = 77/117 (65.81%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DA+ ++LGRLA+Q+A  ++GK KP +AP+ D+GD  +V+N + I VTG+KL  K YY H+GY+G L+E +L++ +   P E + KAV  MLPRN           ++ G+EHP
Sbjct:   15 WFVVDAEDKILGRLATQIAHRLRGKHKPEFAPHMDNGDFIVVVNCEKIKVTGKKLDQKKYYNHSGYVGGLRETSLEKLLASKPEEVLLKAVRGMLPRNRLGRAMLTKLKVYRGTEHP 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_RHISN (50S ribosomal protein L13 OS=Rhizobium sp. (strain NGR234) GN=rplM PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.925e-23
Identity = 54/119 (45.38%), Postives = 76/119 (63.87%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W + DA+G V+GRLAS +A  ++GK K T+ P+ DDGD  IV+NA+   +TG+K  +K YYWHTGY G +KERT ++ +E R P   I KAV RM+PR            ++ G+ HP
Sbjct:   14 KWILIDAEGLVVGRLASIIANRLRGKHKATFTPHVDDGDNVIVINAEKAVLTGKKYTDKKYYWHTGYPGGIKERTARQIIEGRFPERVIEKAVERMVPRGPLGRRQMKNLRVYAGTNHP 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_METNO (50S ribosomal protein L13 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rplM PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.925e-23
Identity = 60/128 (46.88%), Postives = 76/128 (59.38%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP*TI 632
            +W + DA+G V+GRLAS VA  ++GK KP Y P+ D GD  IV+NA  +  TGRK   KVYY HTGY G +KER+ K  +E R P   + KAV RMLPR            ++ GSEHP     P T+
Sbjct:   14 KWVIIDAEGLVVGRLASIVAMRLRGKHKPQYTPHVDCGDNVIVINADKVKFTGRKYDQKVYYHHTGYPGGIKERSAKFILEGRFPERVVEKAVERMLPRGPLFRKILGNLRVYKGSEHPHAAQQPETL 141          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_HAEPS (50S ribosomal protein L13 OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=rplM PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.925e-23
Identity = 51/116 (43.97%), Postives = 72/116 (62.07%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 602
            W V DA G+ LGRLA+++A  ++GK K  Y P+ D GD  IV+NA+ + VTG+K  +K+YYWHTGY+G +K+ T KE + R P   I  AV  MLP+            ++ G+EH
Sbjct:   15 WYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVINAEKVAVTGKKETDKIYYWHTGYVGGIKDATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFRKLKVYAGNEH 130          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_GEOSM (50S ribosomal protein L13 OS=Geobacter sp. (strain M21) GN=rplM PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.925e-23
Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W + D   +VLGR+A+++A V++GK+KPT+ P+ D GD  IV+NA+ I +TGRKL +KVYY H+ Y G LKE T  + +++ P E ++KAV  MLP+N           I+ G  HP
Sbjct:   15 WYLVDVDNKVLGRVATEIANVLRGKNKPTFTPSVDTGDFVIVVNAEKIALTGRKLADKVYYSHSSYPGGLKEITAGKLLDKKPEELLKKAVKGMLPKNKLARHMLKKLKIYSGGAHP 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_GEOLS (50S ribosomal protein L13 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rplM PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.925e-23
Identity = 52/118 (44.07%), Postives = 73/118 (61.86%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W V DA+  VLGRLA+QVA V++GK KP Y P+ D GD  +++NA+ I +TG K+ +KVYY H+G+ G +K  T    + + P E IRKAV  MLP+N           ++ G  HP
Sbjct:   14 QWFVVDAENVVLGRLATQVANVLRGKHKPMYTPSVDTGDFVVIVNAEKIALTGNKMADKVYYSHSGFPGGIKSSTAAAMLSKKPEELIRKAVKGMLPKNKLARHMLKKLKVYSGGAHP 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_DESDG (50S ribosomal protein L13 OS=Desulfovibrio desulfuricans (strain G20) GN=rplM PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.925e-23
Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DA+ ++LGRLA+Q+A  ++GK KP +AP+ D+GD  +V+N + I VTG+KL +K YY ++GY+G L+E+TL   +   P  A+  AV  MLPRN           ++ GSEHP
Sbjct:   15 WYVVDAEDKILGRLAAQIAHRLRGKHKPEFAPHVDNGDFIVVVNCEKIAVTGKKLSDKKYYRYSGYVGGLREQTLANVLATKPERALINAVKGMLPRNRLGRAMLKKLKVYAGSEHP 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_ACTPJ (50S ribosomal protein L13 OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=rplM PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.925e-23
Identity = 51/116 (43.97%), Postives = 72/116 (62.07%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 602
            W V DA G+ LGRLA+++A  ++GK K  Y P+ D GD  IV+NA+ + VTG+K  +K+YYWHTGY+G +K+ T KE + R P   I  AV  MLP+            ++ G+EH
Sbjct:   15 WYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVINAEKVAVTGKKETDKIYYWHTGYVGGIKDATFKEMIARRPEAVIEIAVKGMLPKGPLGREMFRKLKVYAGNEH 130          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_ACTP7 (50S ribosomal protein L13 OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=rplM PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.925e-23
Identity = 51/116 (43.97%), Postives = 72/116 (62.07%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 602
            W V DA G+ LGRLA+++A  ++GK K  Y P+ D GD  IV+NA+ + VTG+K  +K+YYWHTGY+G +K+ T KE + R P   I  AV  MLP+            ++ G+EH
Sbjct:   15 WYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVINAEKVAVTGKKETDKIYYWHTGYVGGIKDATFKEMIARRPEAVIEIAVKGMLPKGPLGREMFRKLKVYAGNEH 130          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_ACTP2 (50S ribosomal protein L13 OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=rplM PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.925e-23
Identity = 51/116 (43.97%), Postives = 72/116 (62.07%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 602
            W V DA G+ LGRLA+++A  ++GK K  Y P+ D GD  IV+NA+ + VTG+K  +K+YYWHTGY+G +K+ T KE + R P   I  AV  MLP+            ++ G+EH
Sbjct:   15 WYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVINAEKVAVTGKKETDKIYYWHTGYVGGIKDATFKEMIARRPEAVIEIAVKGMLPKGPLGREMFRKLKVYAGNEH 130          
The following BLAST results are available for this feature:
BLAST of EY744219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_DESVH1.474e-2344.4450S ribosomal protein L13 OS=Desulfovibrio vulgari... [more]
RL13_RHISN1.925e-2345.3850S ribosomal protein L13 OS=Rhizobium sp. (strain... [more]
RL13_METNO1.925e-2346.8850S ribosomal protein L13 OS=Methylobacterium nodu... [more]
RL13_HAEPS1.925e-2343.9750S ribosomal protein L13 OS=Haemophilus parasuis ... [more]
RL13_GEOSM1.925e-2344.4450S ribosomal protein L13 OS=Geobacter sp. (strain... [more]
RL13_GEOLS1.925e-2344.0750S ribosomal protein L13 OS=Geobacter lovleyi (st... [more]
RL13_DESDG1.925e-2344.4450S ribosomal protein L13 OS=Desulfovibrio desulfu... [more]
RL13_ACTPJ1.925e-2343.9750S ribosomal protein L13 OS=Actinobacillus pleuro... [more]
RL13_ACTP71.925e-2343.9750S ribosomal protein L13 OS=Actinobacillus pleuro... [more]
RL13_ACTP21.925e-2343.9750S ribosomal protein L13 OS=Actinobacillus pleuro... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-C01-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744219 ID=EY744219; Name=EY744219; organism=Citrus sinensis; type=EST; length=820bp
ATAAACCATACTCTTAGGGTTTACGCAGGGCCATCTCTAACTTTTGTTAT
TATTATTATTTGAATGTCCTTTACTTTTGATTTTGGGTTGTAATTTGAAT
ATAGCTCTGAATTTGATTTGCGTTACTCATTTTTGTTTAAAAGAAGTTAT
AACAGAGCAATAGAAAAATGGCAAACCAAGCAGCCACAGCTTTCAGTGGC
AACATGAAGAAAGCGCTTGCTGGGCTGAGGCGAATCAATCTAGAAGGTCT
ACGATGGAGAGTTTTTGATGCTAAAGGCCAGGTCCTTGGGAGATTAGCAT
CTCAGGTAGCTACTGTCGTTCAAGGCAAGGATAAGCCTACGTACGCTCCT
AATCGTGATGATGGTGATATGTGCATTGTGCTTAATGCAAAAGATATATG
TGTTACTGGGAGGAAACTTAAAAATAAGGTTTACTACTGGCATACCGGGT
ATATAGGCCACCTCAAGGAAAGGACCTTAAAAGAACAGATGGAGAGGGAC
CCTACAGAAGCCATTCGTAAAGCTGTCTTACGCATGCTTCCAAGAAATAA
ATTACGTGATGATAGAGATCGAAAACTGAGGATTTTTCCTGGAAGCGAGC
ACCCTTTTTGGCGACCGGCCCCCTGAACCATACGTGATGCCTCCTCGACG
TGGTAGAGAACTGCGACCTCGGGTTAGAAGAGCCATGATTAAAAGAACAA
AAAAAGGCGGAAAAGCAGCCAAATAACCAGGGATTGAGGAAAAACAAAAA
GAAAAAATTTGAAAACAAAATGGCTGGCCTGAAAATTTTGGTGGGGGCCC
CTTTTGGTTTTGAAAAGGGA
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