EY744217

Overview
NameEY744217
Unique NameEY744217
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length951
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_OLIPU (50S ribosomal protein L16, chloroplastic OS=Olimarabidopsis pumila GN=rpl16 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.592e-12
Identity = 38/72 (52.78%), Postives = 47/72 (65.28%), Query Frame = 3 
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G++ G +SRGN ICFGRYALQTL  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLE-PAWITSRQIEAGRRAMTRNVR-RGGKIWVRIFPDK 72
[Close]
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_NASOF (50S ribosomal protein L16, chloroplastic OS=Nasturtium officinale GN=rpl16 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.592e-12
Identity = 38/72 (52.78%), Postives = 47/72 (65.28%), Query Frame = 3 
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G++ G +SRGN ICFGRYALQTL  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLE-PAWITSRQIEAGRRAMTRNVR-RGGKIWVRIFPDK 72
[Close]
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_LOBMA (50S ribosomal protein L16, chloroplastic OS=Lobularia maritima GN=rpl16 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.592e-12
Identity = 38/72 (52.78%), Postives = 47/72 (65.28%), Query Frame = 3 
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G++ G +SRGN ICFGRYALQTL  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLE-PAWITSRQIEAGRRAMTRNVR-RGGKIWVRIFPDK 72
[Close]
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_DRANE (50S ribosomal protein L16, chloroplastic OS=Draba nemorosa GN=rpl16 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.592e-12
Identity = 38/72 (52.78%), Postives = 47/72 (65.28%), Query Frame = 3 
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G++ G +SRGN ICFGRYALQTL  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLE-PAWITSRQIEAGRRAMTRNVR-RGGKIWVRIFPDK 72
[Close]
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_CRUWA (50S ribosomal protein L16, chloroplastic OS=Crucihimalaya wallichii GN=rpl16 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.592e-12
Identity = 38/72 (52.78%), Postives = 47/72 (65.28%), Query Frame = 3 
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G++ G +SRGN ICFGRYALQTL  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLE-PAWITSRQIEAGRRAMTRNVR-RGGKIWVRIFPDK 72
[Close]
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_CAPBU (50S ribosomal protein L16, chloroplastic OS=Capsella bursa-pastoris GN=rpl16 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.592e-12
Identity = 38/72 (52.78%), Postives = 47/72 (65.28%), Query Frame = 3 
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G++ G +SRGN ICFGRYALQTL  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLE-PAWITSRQIEAGRRAMTRNVR-RGGKIWVRIFPDK 72
[Close]
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_BARVE (50S ribosomal protein L16, chloroplastic OS=Barbarea verna GN=rpl16 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.592e-12
Identity = 38/72 (52.78%), Postives = 47/72 (65.28%), Query Frame = 3 
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G++ G +SRGN ICFGRYALQTL  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLE-PAWITSRQIEAGRRAMTRNVR-RGGKIWVRIFPDK 72
[Close]
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_ARATH (50S ribosomal protein L16, chloroplastic OS=Arabidopsis thaliana GN=rpl16 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.592e-12
Identity = 38/72 (52.78%), Postives = 47/72 (65.28%), Query Frame = 3 
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G++ G +SRGN ICFGRYALQTL  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLE-PAWITSRQIEAGRRAMTRNVR-RGGKIWVRIFPDK 72
[Close]
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_ARAHI (50S ribosomal protein L16, chloroplastic OS=Arabis hirsuta GN=rpl16 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.592e-12
Identity = 38/72 (52.78%), Postives = 47/72 (65.28%), Query Frame = 3 
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G++ G +SRGN ICFGRYALQTL  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLE-PAWITSRQIEAGRRAMTRNVR-RGGKIWVRIFPDK 72
[Close]
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_CERDE (50S ribosomal protein L16, chloroplastic OS=Ceratophyllum demersum GN=rpl16 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.303e-12
Identity = 38/72 (52.78%), Postives = 46/72 (63.89%), Query Frame = 3 
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G+M G +SRGN ICFGRYALQ L  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGRMKGISSRGNRICFGRYALQALE-PAWITSRQIEAGRRAMTRYAR-RGGKIWVRIFPDK 72
The following BLAST results are available for this feature:
BLAST of EY744217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
RK16_OLIPU5.592e-1252.7850S ribosomal protein L16, chloroplastic OS=Olimar... [more]
RK16_NASOF5.592e-1252.7850S ribosomal protein L16, chloroplastic OS=Nastur... [more]
RK16_LOBMA5.592e-1252.7850S ribosomal protein L16, chloroplastic OS=Lobula... [more]
RK16_DRANE5.592e-1252.7850S ribosomal protein L16, chloroplastic OS=Draba ... [more]
RK16_CRUWA5.592e-1252.7850S ribosomal protein L16, chloroplastic OS=Crucih... [more]
RK16_CAPBU5.592e-1252.7850S ribosomal protein L16, chloroplastic OS=Capsel... [more]
RK16_BARVE5.592e-1252.7850S ribosomal protein L16, chloroplastic OS=Barbar... [more]
RK16_ARATH5.592e-1252.7850S ribosomal protein L16, chloroplastic OS=Arabid... [more]
RK16_ARAHI5.592e-1252.7850S ribosomal protein L16, chloroplastic OS=Arabis... [more]
RK16_CERDE7.303e-1252.7850S ribosomal protein L16, chloroplastic OS=Cerato... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-B10-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744217 ID=EY744217; Name=EY744217; organism=Citrus sinensis; type=EST; length=951bp
CGCTTCAATTCTCAACTCCAATCGGCTGCTTCTGTCAAAGCGAATTGTAA
ATTGTTTTGATGGGAATCTTCTTCGTTACAATGTCATCAAATCCCTTAGT
TTCGGACCCGTTATTCCAGATCCCGGTCCCAAACTCAGTAGCCTTCAGGC
TAAAACCTTTCTTATGAACCCAACAACTCCAATTTTAACCAGCAGCAGCG
AGGGTAATTCAAGAACCCATTCCAATCGCGATCTCAAAGTCCAACAATCC
GTAGGAGTGATGATGGGTGGCCGTTCGTTTCCATTAATATTCACGAATCC
AAATCCAAATCGCTTGCAAGTTTCGATTGGTGCCGCTCTCTTTTTCGTTT
CGGTGGGCTTGTTCCTGTTCCTGTTGTCCAGCGGACAAATGACTGGTCTC
CAACAGAAGGTTCTGGATCTTAGTCATATACTAACGGAGACAACAAAATC
ATTATTCCTCGGACACGACACTCAACGCTGGATCTCTGATTATTCACCCG
TGACAATGTCGATGTCAATGTTGTTGGCCGGCCCCAAACGAATAAAGTTT
CCCAAACAAACACAAAGGAAAAATGACGGGAAAAGCCAGTCGAGGAAACC
TAATTTGTTTCGGGAGGTATGCTCTTCAAACCCTTCGAACCCCGCTTGGA
TCTAAGCCTGAACAAATCGAAACGGGGCCCCAAGCAATGGTACGGAAAGG
TAAGCCGCGGGGGGAAAAATTTTGGGTGCGGATTTTCCCCGAAAAAACCC
CTCCCGGGCAAAGCCGGCGAAAACCCAAAGGGGCCCTCCGGGAAGGGATT
CCCGGGGTTACGGGGGGAACCCTTTTTTTACCCCCCGGGTAAAAAATTTT
TTTCAAAAATGTGAGGGAATAACCCAAAAAACATTTGGGCGGGAAAGGGA
TTTTTTGTAAAAAAGGGGGCCCCCCCACAAAGAGGCCCCAATAAAAAAAC
A
back to top