EY744217

Overview
NameEY744217
Unique NameEY744217
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length951
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_CUSOB (50S ribosomal protein L16, plastid OS=Cuscuta obtusiflora GN=rpl16 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.627e-11
Identity = 36/72 (50.00%), Postives = 46/72 (63.89%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P +  F  +H+G+M G +SRGN ICFG+Y LQ L  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKKTRFRRQHRGRMKGLSSRGNQICFGKYGLQALE-PAWITSRQIEAGRRAMTRNAR-RGGKIWVRIFPDK 72          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_SPIOL (50S ribosomal protein L16, chloroplastic OS=Spinacia oleracea GN=rpl16 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 2.125e-11
Identity = 37/72 (51.39%), Postives = 45/72 (62.50%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G+M G + RGN ICFGRYALQ L  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALE-PAWITSRQIEAGRRAMTRNAR-RGGKIWVRIFPDK 72          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_FAGEA (50S ribosomal protein L16, chloroplastic OS=Fagopyrum esculentum subsp. ancestrale GN=rpl16 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.125e-11
Identity = 37/72 (51.39%), Postives = 45/72 (62.50%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G+M G + RGN ICFGRYALQ L  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALE-PAWITSRQIEAGRRAMTRNAR-RGGKLWVRIFPDK 72          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_CICAR (50S ribosomal protein L16, chloroplastic OS=Cicer arietinum GN=rpl16 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.125e-11
Identity = 36/72 (50.00%), Postives = 47/72 (65.28%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P +  F  +H+G+M GKA RGN ICFG+YALQ L  P      QIE G +AM R  + RG + W+RIFP+K
Sbjct:    3 SPKKTRFRKQHRGRMKGKACRGNKICFGKYALQALE-PAWITSRQIEAGRRAMSRNVR-RGGQIWIRIFPDK 72          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_DRIGR (50S ribosomal protein L16, chloroplastic OS=Drimys granadensis GN=rpl16 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.775e-11
Identity = 37/72 (51.39%), Postives = 45/72 (62.50%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G+M G + RGN ICFGRYALQ L  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGRMKGISYRGNYICFGRYALQALE-PAWITSRQIEAGRRAMTRYAR-RGGKIWVRIFPDK 72          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_CUSEX (50S ribosomal protein L16, plastid OS=Cuscuta exaltata GN=rpl16 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.775e-11
Identity = 37/72 (51.39%), Postives = 45/72 (62.50%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+GK+ G + RGN ICFGRYALQ L  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGKLKGISYRGNHICFGRYALQALE-PAWLTSRQIEAGRRAMTRNAR-RGGKIWVRIFPDK 72          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_AETGR (50S ribosomal protein L16, chloroplastic OS=Aethionema grandiflora GN=rpl16 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.775e-11
Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G++ G + RGN ICFGRYALQTL  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGRLKGISYRGNRICFGRYALQTLE-PAWITSRQIEAGRRAMTRNVR-RGGKIWVRIFPDK 72          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_AETCO (50S ribosomal protein L16, chloroplastic OS=Aethionema cordifolium GN=rpl16 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.775e-11
Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G++ G + RGN ICFGRYALQTL  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGRLKGISYRGNRICFGRYALQTLE-PAWITSRQIEAGRRAMTRNVR-RGGKIWVRIFPDK 72          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_PIPCE (50S ribosomal protein L16, chloroplastic OS=Piper cenocladum GN=rpl16 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.624e-11
Identity = 37/72 (51.39%), Postives = 45/72 (62.50%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G+M G + RGN ICFGRYALQ L  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALE-PAWITSRQIEAGRRAMARYAR-RGGKIWVRIFPDK 72          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_PHAAO (50S ribosomal protein L16, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana GN=rpl16 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.624e-11
Identity = 37/72 (51.39%), Postives = 45/72 (62.50%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G+M G + RGN ICFGRYALQ L  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGRMKGISCRGNHICFGRYALQALE-PAWITARQIEAGRRAMTRYAR-RGGKIWVRIFPDK 72          
The following BLAST results are available for this feature:
BLAST of EY744217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
RK16_CUSOB1.627e-1150.0050S ribosomal protein L16, plastid OS=Cuscuta obtu... [more]
RK16_SPIOL2.125e-1151.3950S ribosomal protein L16, chloroplastic OS=Spinac... [more]
RK16_FAGEA2.125e-1151.3950S ribosomal protein L16, chloroplastic OS=Fagopy... [more]
RK16_CICAR2.125e-1150.0050S ribosomal protein L16, chloroplastic OS=Cicer ... [more]
RK16_DRIGR2.775e-1151.3950S ribosomal protein L16, chloroplastic OS=Drimys... [more]
RK16_CUSEX2.775e-1151.3950S ribosomal protein L16, plastid OS=Cuscuta exal... [more]
RK16_AETGR2.775e-1151.3950S ribosomal protein L16, chloroplastic OS=Aethio... [more]
RK16_AETCO2.775e-1151.3950S ribosomal protein L16, chloroplastic OS=Aethio... [more]
RK16_PIPCE3.624e-1151.3950S ribosomal protein L16, chloroplastic OS=Piper ... [more]
RK16_PHAAO3.624e-1151.3950S ribosomal protein L16, chloroplastic OS=Phalae... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-B10-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744217 ID=EY744217; Name=EY744217; organism=Citrus sinensis; type=EST; length=951bp
CGCTTCAATTCTCAACTCCAATCGGCTGCTTCTGTCAAAGCGAATTGTAA
ATTGTTTTGATGGGAATCTTCTTCGTTACAATGTCATCAAATCCCTTAGT
TTCGGACCCGTTATTCCAGATCCCGGTCCCAAACTCAGTAGCCTTCAGGC
TAAAACCTTTCTTATGAACCCAACAACTCCAATTTTAACCAGCAGCAGCG
AGGGTAATTCAAGAACCCATTCCAATCGCGATCTCAAAGTCCAACAATCC
GTAGGAGTGATGATGGGTGGCCGTTCGTTTCCATTAATATTCACGAATCC
AAATCCAAATCGCTTGCAAGTTTCGATTGGTGCCGCTCTCTTTTTCGTTT
CGGTGGGCTTGTTCCTGTTCCTGTTGTCCAGCGGACAAATGACTGGTCTC
CAACAGAAGGTTCTGGATCTTAGTCATATACTAACGGAGACAACAAAATC
ATTATTCCTCGGACACGACACTCAACGCTGGATCTCTGATTATTCACCCG
TGACAATGTCGATGTCAATGTTGTTGGCCGGCCCCAAACGAATAAAGTTT
CCCAAACAAACACAAAGGAAAAATGACGGGAAAAGCCAGTCGAGGAAACC
TAATTTGTTTCGGGAGGTATGCTCTTCAAACCCTTCGAACCCCGCTTGGA
TCTAAGCCTGAACAAATCGAAACGGGGCCCCAAGCAATGGTACGGAAAGG
TAAGCCGCGGGGGGAAAAATTTTGGGTGCGGATTTTCCCCGAAAAAACCC
CTCCCGGGCAAAGCCGGCGAAAACCCAAAGGGGCCCTCCGGGAAGGGATT
CCCGGGGTTACGGGGGGAACCCTTTTTTTACCCCCCGGGTAAAAAATTTT
TTTCAAAAATGTGAGGGAATAACCCAAAAAACATTTGGGCGGGAAAGGGA
TTTTTTGTAAAAAAGGGGGCCCCCCCACAAAGAGGCCCCAATAAAAAAAC
A
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