EY744217

Overview
NameEY744217
Unique NameEY744217
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length951
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_STAPU (50S ribosomal protein L16, chloroplastic OS=Staurastrum punctulatum GN=rpl16 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.182e-11
Identity = 34/73 (46.58%), Postives = 47/73 (64.38%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEKT 749
            +P    +  +H+G++ G A+RGN ICFGR+ALQ L  P      QIE G +AM R  + RG K W+RIFP+K+
Sbjct:    3 SPRRTKYRKQHRGRLKGTATRGNRICFGRFALQALE-PSWITSRQIEAGRRAMTRYAR-RGGKLWIRIFPDKS 73          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_LIRTU (50S ribosomal protein L16, chloroplastic OS=Liriodendron tulipifera GN=rpl16 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.182e-11
Identity = 37/71 (52.11%), Postives = 44/71 (61.97%), Query Frame = 3
Query:  534 PNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            P    F  +H+G+M G + RGN ICFGRYALQ L  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    2 PKRTRFRKQHRGRMKGISYRGNHICFGRYALQALE-PAWITSRQIEAGRRAMTRYAR-RGGKIWVRIFPDK 70          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_CUCSA (50S ribosomal protein L16, chloroplastic OS=Cucumis sativus GN=rpl16 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.182e-11
Identity = 36/72 (50.00%), Postives = 44/72 (61.11%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F   H+G+M G + RGN ICFGRYA+Q L  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKHHRGRMKGISYRGNSICFGRYAIQALE-PAWITSRQIEAGRRAMTRNAR-RGGKIWVRIFPDK 72          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_CHLSC (50S ribosomal protein L16, chloroplastic OS=Chloranthus spicatus GN=rpl16 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.182e-11
Identity = 37/71 (52.11%), Postives = 44/71 (61.97%), Query Frame = 3
Query:  534 PNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            P    F  +H+G+M G + RGN ICFGRYALQ L  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    5 PKRTRFRKQHRGRMKGISYRGNNICFGRYALQALE-PAWITSRQIEAGRRAMTRYAR-RGGKIWVRIFPDK 73          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_CALFG (50S ribosomal protein L16, chloroplastic OS=Calycanthus floridus var. glaucus GN=rpl16 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.182e-11
Identity = 37/72 (51.39%), Postives = 45/72 (62.50%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G+M G + RGN ICFGRYALQ L  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALE-PSWITSRQIEAGRRAMTRYAR-RGGKIWVRIFPDK 72          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_IPOPU (50S ribosomal protein L16, chloroplastic OS=Ipomoea purpurea GN=rpl16 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.074e-11
Identity = 36/72 (50.00%), Postives = 45/72 (62.50%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G+M G +S GN ICFG+YALQ L  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGRMKGISSGGNHICFGKYALQALE-PAWITSRQIEAGRRAMTRNAR-RGGKIWVRIFPDK 72          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_CRYJA (50S ribosomal protein L16, chloroplastic OS=Cryptomeria japonica GN=rpl16 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.074e-11
Identity = 40/91 (43.96%), Postives = 56/91 (61.54%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK---TPPGQSRR---KPKGA 785
            +P    F ++H+G++ G +SRGN ICFGR+ALQ L  P+     QIE G +A+ R  + RG K W+RIFP+K   T P + R    K KG+
Sbjct:    3 SPKRTKFRHQHRGRIKGISSRGNRICFGRFALQALE-PVWITSGQIEAGRRAITRYAR-RGVKIWIRIFPDKPIRTRPAEIRMGSGKAKGS 91          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_CITSI (50S ribosomal protein L16, chloroplastic OS=Citrus sinensis GN=rpl16 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.074e-11
Identity = 37/71 (52.11%), Postives = 44/71 (61.97%), Query Frame = 3
Query:  534 PNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            P    F  +H+G+M G + RGN ICFGRYALQ L  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    5 PKRTRFRKQHRGRMKGISYRGNHICFGRYALQALE-PAWITSRQIEAGRRAMTRNVR-RGGKIWVRIFPDK 73          
The following BLAST results are available for this feature:
BLAST of EY744217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
RK16_STAPU6.182e-1146.5850S ribosomal protein L16, chloroplastic OS=Staura... [more]
RK16_LIRTU6.182e-1152.1150S ribosomal protein L16, chloroplastic OS=Liriod... [more]
RK16_CUCSA6.182e-1150.0050S ribosomal protein L16, chloroplastic OS=Cucumi... [more]
RK16_CHLSC6.182e-1152.1150S ribosomal protein L16, chloroplastic OS=Chlora... [more]
RK16_CALFG6.182e-1151.3950S ribosomal protein L16, chloroplastic OS=Calyca... [more]
RK16_IPOPU8.074e-1150.0050S ribosomal protein L16, chloroplastic OS=Ipomoe... [more]
RK16_CRYJA8.074e-1143.9650S ribosomal protein L16, chloroplastic OS=Crypto... [more]
RK16_CITSI8.074e-1152.1150S ribosomal protein L16, chloroplastic OS=Citrus... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-B10-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744217 ID=EY744217; Name=EY744217; organism=Citrus sinensis; type=EST; length=951bp
CGCTTCAATTCTCAACTCCAATCGGCTGCTTCTGTCAAAGCGAATTGTAA
ATTGTTTTGATGGGAATCTTCTTCGTTACAATGTCATCAAATCCCTTAGT
TTCGGACCCGTTATTCCAGATCCCGGTCCCAAACTCAGTAGCCTTCAGGC
TAAAACCTTTCTTATGAACCCAACAACTCCAATTTTAACCAGCAGCAGCG
AGGGTAATTCAAGAACCCATTCCAATCGCGATCTCAAAGTCCAACAATCC
GTAGGAGTGATGATGGGTGGCCGTTCGTTTCCATTAATATTCACGAATCC
AAATCCAAATCGCTTGCAAGTTTCGATTGGTGCCGCTCTCTTTTTCGTTT
CGGTGGGCTTGTTCCTGTTCCTGTTGTCCAGCGGACAAATGACTGGTCTC
CAACAGAAGGTTCTGGATCTTAGTCATATACTAACGGAGACAACAAAATC
ATTATTCCTCGGACACGACACTCAACGCTGGATCTCTGATTATTCACCCG
TGACAATGTCGATGTCAATGTTGTTGGCCGGCCCCAAACGAATAAAGTTT
CCCAAACAAACACAAAGGAAAAATGACGGGAAAAGCCAGTCGAGGAAACC
TAATTTGTTTCGGGAGGTATGCTCTTCAAACCCTTCGAACCCCGCTTGGA
TCTAAGCCTGAACAAATCGAAACGGGGCCCCAAGCAATGGTACGGAAAGG
TAAGCCGCGGGGGGAAAAATTTTGGGTGCGGATTTTCCCCGAAAAAACCC
CTCCCGGGCAAAGCCGGCGAAAACCCAAAGGGGCCCTCCGGGAAGGGATT
CCCGGGGTTACGGGGGGAACCCTTTTTTTACCCCCCGGGTAAAAAATTTT
TTTCAAAAATGTGAGGGAATAACCCAAAAAACATTTGGGCGGGAAAGGGA
TTTTTTGTAAAAAAGGGGGCCCCCCCACAAAGAGGCCCCAATAAAAAAAC
A
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