EY744214

Overview
NameEY744214
Unique NameEY744214
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744214 vs. ExPASy Swiss-Prot
Match: TPSD1_PINTA (Levopimaradiene synthase, chloroplastic OS=Pinus taeda GN=LPS PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.845e-15
Identity = 53/181 (29.28%), Postives = 89/181 (49.17%), Query Frame = 2
Query:  125 DLAGLVKHLLLHPYRKSLS--SARNFFHGNFQGNEYVWILDLK------------ELANMDFKLVQSLHQKEIVQISKWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRIELTKPISXXXXXXXXXXXXGALDVLTLFTEAINRWDLGGIEQLPECRKICFKALNELTNEISNK 625
            ++ G V++ L +P+ +S+    AR++   N+  N+ VW+                ELA +DF  VQ  H++E+  I +WW   G ++ L F R++  + Y    +   +P  +  R   TK  +            G LD L LF+E++ RWDL  ++Q+P+  KICFK      NEI+ +
Sbjct:  476 NIRGEVEYALKYPWHRSMPRLEARSYIE-NYGPND-VWLGKTMYMMPNISNEKYLELAKLDFNRVQFFHRQELQDIRRWWNSSGFSQ-LGFTRERVAEIYFSPASFLFEPEFATCRAVYTKTSNFTVILDDLYDAHGTLDNLKLFSESVKRWDLSLVDQMPQDMKICFKGFYNTFNEIAEE 653          
BLAST of EY744214 vs. ExPASy Swiss-Prot
Match: GBIS2_ARATH ((Z)-gamma-bisabolene synthase 2 OS=Arabidopsis thaliana GN=TPS13 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.253e-11
Identity = 53/215 (24.65%), Postives = 97/215 (45.12%), Query Frame = 2
Query:   11 VSLYEASQLSIVGEDVLDEAGDFSVNLLSEYATHLADYDLAGLVKHLLLHPYRKSLSSARNFFHGNFQGNEYVWILDLKE--------LANMDFKLVQSLHQKEIVQISKWWKELGLAKKLEFA-RDQPLKWYMWSMACFTDPSLSWQRIELTKPISXXXXXXXXXXXXGALDVLTLFTEAINRWDLGGIEQLPECRKICFKALNELTNEISNKV 628
            +SLYEA+ L    + +LDEA +F+       ++HL    + G+ +  +L   R +L   + +        EY+   + +E        LA ++FKL+Q  + KE+    KWW ELGL  K     R++ ++ ++  +  + +P  S  R+   K                ++  LT   + + RW+  GI  L +  +I FK   ++ ++I   V
Sbjct:  151 LSLYEAAHLGTTTDYILDEALEFT-------SSHLKSLLVGGMCRPHILRLIRNTLYLPQRWNMEAVIAREYISFYEQEEDHDKMLLRLAKLNFKLLQLHYIKELKTFIKWWMELGLTSKWPSQFRERIVEAWLAGLMMYFEPQFSGGRVIAAKFNYLLTILDDACDHYFSIPELTRLVDCVERWNHDGIHTLEDISRIIFKLALDVFDDIGRGV 358          
BLAST of EY744214 vs. ExPASy Swiss-Prot
Match: CPS1_ORYSJ (Ent-copalyl diphosphate synthase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CPS1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.473e-11
Identity = 53/168 (31.55%), Postives = 77/168 (45.83%), Query Frame = 2
Query:   14 SLYEASQLSIVGEDVLDEAGDFSVNLLSEYATH-------LADYDLAGLVKHLLLHPYRKSLS--SARNFFHGNFQGNEYVWI------------LDLKELANMDFKLVQSLHQKEIVQISKWWKELGLAKKLEFARDQPLKWYMWSMACFTDPS-----LSWQRIEL 439
            +L  ASQ+S  GED+L  A +FS   L E           +   DL G V++ L  P+  SL    AR +  G + GN+ VWI                ELA  DF   Q+LHQ E+  + KW+ E GL +      +  L+ Y  + AC  +P+     L+W R+ +
Sbjct:  466 NLNRASQISFPGEDILQRARNFSYEFLREREAQGTLHDKWIISKDLPGEVQYTLDFPWYASLPRVEARTYI-GQYGGNDDVWIGKTLYRMPIVNNATYLELAKQDFNRCQALHQHELQGLQKWFIENGL-EAFGMTPEDVLRAYFLAAACIFEPNRASERLAWARVSV 631          
The following BLAST results are available for this feature:
BLAST of EY744214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
TPSD1_PINTA2.845e-1529.28Levopimaradiene synthase, chloroplastic OS=Pinus t... [more]
GBIS2_ARATH7.253e-1124.65(Z)-gamma-bisabolene synthase 2 OS=Arabidopsis tha... [more]
CPS1_ORYSJ9.473e-1131.55Ent-copalyl diphosphate synthase 1, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-B07-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744214 ID=EY744214; Name=EY744214; organism=Citrus sinensis; type=EST; length=884bp
CCACGCGTCCGTGAGTTTATACGAGGCCTCACAGCTAAGTATAGTAGGAG
AAGATGTGCTTGATGAAGCTGGAGACTTTAGTGTGAATCTCCTTAGTGAA
TATGCGACACATCTAGCGGATTATGATCTAGCGGGACTTGTTAAGCATCT
GTTGCTACATCCCTATAGGAAAAGCTTGTCCTCCGCCAGAAACTTTTTCC
ACGGTAATTTTCAGGGCAATGAATATGTTTGGATACTGGATTTAAAAGAG
CTAGCGAATATGGATTTCAAATTGGTCCAGTCCTTACACCAAAAGGAGAT
TGTGCAAATATCCAAATGGTGGAAGGAGCTCGGTTTGGCTAAGAAGTTGG
AATTTGCAAGGGACCAACCACTTAAATGGTACATGTGGTCCATGGCATGT
TTCACGGATCCAAGCTTATCGTGGCAAAGGATAGAGCTCACAAAGCCTAT
ATCCTTCATCTACATTATCGACGATATTTTTGATATTTATGGAGCACTCG
ATGTCCTCACCCTTTTTACAGAAGCTATTAATAGATGGGATCTCGGGGGC
ATTGAACAACTTCCGGAGTGCAGGAAGATATGTTTCAAGGCTCTGAACGA
ACTCACTAATGAAATCAGCAACAAGGTGGTATAAGAGCATGGGTATAACC
CCTGTGCACTCCCTGCGAAAGGGGTGGGGGAGGTTTGGGCAACCCGTTTT
CCTGAAAAAAACCAAAAGGGTTTGGCTTCCGGGGCAATTGGCCAAAGGGT
GGAAAAAAAAATTTGAAAAAATGGGGATTGGTTACCCCCGGGGGTACCCC
CGGGGGAAATGGGGCCCTTTTTCTTTTCCCCCGGGGGGCAGGGGATTCCC
CCGGGGGAAAAATGGGGGCGACCCCCTTTTGAGC
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