EY744211

Overview
NameEY744211
Unique NameEY744211
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length956
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY744211_ssr342 microsatellite EY744211_ssr342:342..353. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY744211 vs. ExPASy Swiss-Prot
Match: ARR11_ARATH (Two-component response regulator ARR11 OS=Arabidopsis thaliana GN=ARR11 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.643e-11
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:  421 DEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKN-AVPKTIMQLMSVDGLTRENVASHLQKYRLYLKK 618
            D  + + K+ R+VW+ +LH +FV+AV  +G  + A PK I+ LM+V  LTRENVASHLQKYRLYL +
Sbjct:  185 DPSSSSSKKARVVWSFELHHKFVNAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHLQKYRLYLSR 251
[Close]
BLAST of EY744211 vs. ExPASy Swiss-Prot
Match: ARR13_ARATH (Putative two-component response regulator ARR13 OS=Arabidopsis thaliana GN=ARR13 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 6.244e-11
Identity = 32/73 (43.84%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:  400 GSGGAGGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKK 618
            G     G+  ++  K+ ++ WT  L   F+ A+ H+G    VPK I+ +M+V  LTRENVASHLQKYRL++K+
Sbjct:  210 GGPSDDGESLSQPPKKKKIWWTNPLQDLFLQAIQHIGYDKVVPKKILAIMNVPYLTRENVASHLQKYRLFVKR 282
The following BLAST results are available for this feature:
BLAST of EY744211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
ARR11_ARATH1.643e-1153.73Two-component response regulator ARR11 OS=Arabidop... [more]
ARR13_ARATH6.244e-1143.84Putative two-component response regulator ARR13 OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-B04-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744211 ID=EY744211; Name=EY744211; organism=Citrus sinensis; type=EST; length=956bp
CCCGCGTCCGATCAGTTCTTGTTTTAATTTTCTTTTTAGTAAATAAATCA
GAGAAAAAGTTAATTGAATTGAGTTTTGAATTTCGAGATAAAAAGAGTGT
CACAAATAATGAGAGAGGACGACTCAAATTGGTTCGCAAGATGGGAAGAA
GATCTTCCCTCCTATGAAGAGCTTATACCTCTCTCTCAAACCCTAATCAG
TCCTGATCTCGCTGTTGCTTTCGATATCCGAAACCCCGTCAACGGCAACG
GCAACGGCAACGGCAACGCCCTTTCGCAGCACCAGCAACTTCAACAGCAA
CAACCACTCACTCCGACCAACAATAACAACAACAGCAATAGCAACAACAA
CAACCCACTTGGGCAGTCTGATTTTGCTGCCGAGAACTCGGCAGAGATGG
GCTCAGGTGGCGCGGGTGGCGACGAGCCCGCTCGTACCCTGAAACGGCCC
CGCCTCGTCTGGACGCCGCAGCTCCATAAAAGATTCGTGGACGCTGTGGC
TCACTTGGGGATCAAGAATGCCGTTCCCAAAACTATAATGCAATTGATGA
GTGTTGATGGGTTGACGAGGGAGAACGTTGCTAGTCATCTACAGAAATAC
CGGCTTTATCTTAAAAAAAGGCAGGGATTGTCCGGCGGAGGTGGTGGCGG
ACCCGGTGGGGTCAACGGTGGCGGTGCCGGGGCTGCGGGGGTCAACCGGA
TTCGGCTACTGCCCCTTGGTTGCAGCCCCCCGGTTTCCGGGTCTTTTCTG
GCCCCGGGGGCCCGGGGAAATTCGAAAATTTCTTGCCCGTATGGGCCTGG
GGGGGGCCCCCCCCCAAAACAAAAGGGGAGGGGGGGGTGGCGGGTGGGAA
TCCCCCTTTTTGAGGGGCACCCCGTATTACAATGGCAAAAAAAATCTTTT
TTTTGGGGCCCCCCCCCACAAGGGGGGGATTTTTGGAACCACTATTTTTT
TTTTTG
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