EY744209

Overview
NameEY744209
Unique NameEY744209
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length977
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744209 vs. ExPASy Swiss-Prot
Match: TBA2_HOMAM (Tubulin alpha-2 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 7.342e-31
Identity = 64/193 (33.16%), Postives = 107/193 (55.44%), Query Frame = 1
Query:   13 LNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 567
            LN DL +   NL+P+PR+HF +  ++P+ S     +  L+V E+T   ++  N M   DPRHG+Y+    ++RG +  K+V   + NV+ K +  FV+W P   K  +   PP          +S A   + N+T+I E + R+  +   M+ ++AF+HWY GEGM+E +F+EA  ++  L  +Y++    TA
Sbjct:  248 LNVDLTEFQTNLVPYPRIHFPLTTYSPIISAEKAYHEQLSVGEITSACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVTASIANVKTKRTIQFVDWCPTGFKVGINYQPPTVVPGADLAKVSRAVCMLSNTTAIAEAWARLDHKVDLMYAKRAFVHWYVGEGMEERQFSEAREDLATLEKDYEEVGIDTA 440          
BLAST of EY744209 vs. ExPASy Swiss-Prot
Match: TBA8_RAT (Tubulin alpha-8 chain OS=Rattus norvegicus GN=Tuba8 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 9.589e-31
Identity = 62/187 (33.16%), Postives = 106/187 (56.68%), Query Frame = 1
Query:   13 LNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 549
            LN DL +   NL+P+PR+HF +V +AP+ S     +  L+V E+T   ++  + M   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:  248 LNVDLTEFQTNLVPYPRIHFPLVTYAPIVSAEKAYHEQLSVAEITSSCFEPNSQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434          
BLAST of EY744209 vs. ExPASy Swiss-Prot
Match: TBA3_RAT (Tubulin alpha-3 chain OS=Rattus norvegicus GN=Tuba3a PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 9.589e-31
Identity = 62/187 (33.16%), Postives = 105/187 (56.15%), Query Frame = 1
Query:   13 LNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 549
            LN DL +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:  248 LNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434          
BLAST of EY744209 vs. ExPASy Swiss-Prot
Match: TBA3_MOUSE (Tubulin alpha-3 chain OS=Mus musculus GN=Tuba3a PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 9.589e-31
Identity = 62/187 (33.16%), Postives = 105/187 (56.15%), Query Frame = 1
Query:   13 LNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 549
            LN DL +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:  248 LNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434          
BLAST of EY744209 vs. ExPASy Swiss-Prot
Match: TBA3C_HUMAN (Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C PE=1 SV=3)

HSP 1 Score: 134.42 bits (337), Expect = 9.589e-31
Identity = 62/187 (33.16%), Postives = 105/187 (56.15%), Query Frame = 1
Query:   13 LNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 549
            LN DL +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:  248 LNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434          
BLAST of EY744209 vs. ExPASy Swiss-Prot
Match: TBA1_EMENI (Tubulin alpha-1 chain OS=Emericella nidulans GN=tubA PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 9.589e-31
Identity = 60/187 (32.09%), Postives = 106/187 (56.68%), Query Frame = 1
Query:   13 LNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR--------GLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 549
            LN DL +   NL+P+PR+HF +V ++P+ S     + A +V ++T   ++  N M   DPR+G+Y+    ++RG +  KE    +  ++ K +  FV+W P   K  +C  PP+         ++ A   + N+T+I E +  +  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:  248 LNVDLNEFQTNLVPYPRIHFPLVAYSPVISADKASHEANSVQDITMSCFEPNNQMVKCDPRNGKYMATCLLYRGDVVPKETHAAVATLKTKRTIQFVDWCPTGFKIGICYQPPQQVPNGDLAKVNRAVCMLSNTTAISEAWSALDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 434          
BLAST of EY744209 vs. ExPASy Swiss-Prot
Match: TBA1A_PIG (Tubulin alpha-1A chain OS=Sus scrofa GN=TUBA1A PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 9.589e-31
Identity = 63/187 (33.69%), Postives = 104/187 (55.61%), Query Frame = 1
Query:   13 LNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 549
            LN DL +   NL+P+PR HF +  +AP+ S     +  L+V E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  +M  L  +Y++
Sbjct:  248 LNVDLTEFQTNLVPYPRAHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434          
BLAST of EY744209 vs. ExPASy Swiss-Prot
Match: TBA_SORMA (Tubulin alpha chain OS=Sordaria macrospora GN=TUBA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.252e-30
Identity = 61/187 (32.62%), Postives = 105/187 (56.15%), Query Frame = 1
Query:   13 LNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR--------GLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 549
            LN DL +   NL+P+PR+HF +V +AP+ S     + A +V E+T   ++  N M   DPRHG+Y+    ++ G +   +    + +++ K +  FV+W P   K  +C  PP          ++ A   + N+T+I E +  +S +F  M+ ++AF+HWY GEGM+E EF+EA   +  L ++Y++
Sbjct:  248 LNVDLNEFQTNLVPYPRIHFPLVAYAPVISAAKAAHEANSVQEMTMSCFEPNNQMVKCDPRHGKYMATCLLYGGDVVPNDAHAAVASLKTKRTIQFVDWCPTGFKLGICYQPPHQVPNGDLAKVNRAVCMLSNTTAIAEAWSALSSKFDLMYSKRAFVHWYVGEGMEEGEFSEAREVLAALEADYEE 434          
BLAST of EY744209 vs. ExPASy Swiss-Prot
Match: TBA8_MOUSE (Tubulin alpha-8 chain OS=Mus musculus GN=Tuba8 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.252e-30
Identity = 62/187 (33.16%), Postives = 106/187 (56.68%), Query Frame = 1
Query:   13 LNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 549
            LN DL +   NL+P+PR+HF +V +AP+ S     +  L+V E+T   ++  + M   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:  248 LNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434          
BLAST of EY744209 vs. ExPASy Swiss-Prot
Match: TBA8_HUMAN (Tubulin alpha-8 chain OS=Homo sapiens GN=TUBA8 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.252e-30
Identity = 62/187 (33.16%), Postives = 106/187 (56.68%), Query Frame = 1
Query:   13 LNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 549
            LN DL +   NL+P+PR+HF +V +AP+ S     +  L+V E+T   ++  + M   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:  248 LNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434          
The following BLAST results are available for this feature:
BLAST of EY744209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 413
Match NameE-valueIdentityDescription
TBA2_HOMAM7.342e-3133.16Tubulin alpha-2 chain OS=Homarus americanus PE=2 S... [more]
TBA8_RAT9.589e-3133.16Tubulin alpha-8 chain OS=Rattus norvegicus GN=Tuba... [more]
TBA3_RAT9.589e-3133.16Tubulin alpha-3 chain OS=Rattus norvegicus GN=Tuba... [more]
TBA3_MOUSE9.589e-3133.16Tubulin alpha-3 chain OS=Mus musculus GN=Tuba3a PE... [more]
TBA3C_HUMAN9.589e-3133.16Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C... [more]
TBA1_EMENI9.589e-3132.09Tubulin alpha-1 chain OS=Emericella nidulans GN=tu... [more]
TBA1A_PIG9.589e-3133.69Tubulin alpha-1A chain OS=Sus scrofa GN=TUBA1A PE=... [more]
TBA_SORMA1.252e-3032.62Tubulin alpha chain OS=Sordaria macrospora GN=TUBA... [more]
TBA8_MOUSE1.252e-3033.16Tubulin alpha-8 chain OS=Mus musculus GN=Tuba8 PE=... [more]
TBA8_HUMAN1.252e-3033.16Tubulin alpha-8 chain OS=Homo sapiens GN=TUBA8 PE=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-B02-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744209 ID=EY744209; Name=EY744209; organism=Citrus sinensis; type=EST; length=977bp
CCCACGCGTCCGCTGAACTCTGACCTTCGAAAGCTTGCTGTTAACTTGAT
TCCTTTCCCTCGCCTGCACTTCTTCATGGTTGGGTTTGCTCCCCTTACCT
CCCGTGGTTCTCAGCAGTACCGTGCCTTGACAGTCCCAGAACTTACCCAA
CAAATGTGGGATGCCAAGAACATGATGTGTGCTGCCGACCCAAGGCACGG
TCGTTACCTCACTGCTTCTGCCATGTTCAGGGGTAAAATGAGCACCAAGG
AAGTCGACGAGCAGATGATCAATGTTCAAAACAAAAACTCTTCCTACTTT
GTGGAGTGGATTCCAAACAATGTGAAGTCCAGTGTTTGTGACATTCCTCC
CAGAGGTCTCTCCATGGCATCCACCTTCATCGGGAACTCAACATCCATCC
AAGAAATGTTCCGAAGAGTGAGTGAGCAATTCACAGCTATGTTTAGGAGA
AAGGCTTTCCTTCACTGGTACACTGGTGAAGGAATGGATGAAATGGAGTT
CACTGAAGCTGAGAGCAATATGAATGACCTTGTGTCTGAGTACCAGCAGT
ACCAGGATGCCACCGCCGATGAGGAAGGTGAGTACAAAGATGAGGAAGAG
GGAGAAATGGAGCATATTTGAGGAAATTGTGTATGATGCATATTTGTCTG
GGTAGCTGGTTTTGTCAACCTTGCTTGGGAATGGAAAAAAATGATCCTAT
GAAGGGTTAAAATTTTTTCTTTCCCCAGTTTTTTTACCTCCAGTAACCAT
TAAAATGGGGGGAATGGAGGAAGGGGATTCAAAAAAGAATCCATTATTTG
GGGGAAGGGAAAAAATTAAAGGGAAGGGAGCCTTTTTTTTTTGAAAATAA
AAAAAGGGGGGGGCGCACCCTTTAACCCTTTACAATTCTTTTTTCGGGGG
ATTTTAAAATTCAATTTTTTTTGGATTTTCTCATTTTTTCCCCCTTAGCC
CCCTTTTGTTCTTTTTTTTTTATTGTT
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