EY744209

Overview
NameEY744209
Unique NameEY744209
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length977
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744209 vs. ExPASy Swiss-Prot
Match: TBG_EUPAE (Tubulin gamma chain OS=Euplotes aediculatus PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.009e-12
Identity = 42/186 (22.58%), Postives = 95/186 (51.08%), Query Frame = 1
Query:   13 LNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY---RALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDE---MEFTEAESNMNDLVSEY 543
            +N+D+  L  +L+P PR HF M G+ PL+    Q+Y   R  T  ++ +++   KN+M     + G Y++   + +G +   +V + +  ++ +  + F+ W P +++ ++    P    G  ++   + N T I+ +F+ + +Q+    +R A+++ +    + E    EF  ++  + +L+ EY
Sbjct:  246 MNNDMVGLIASLVPTPRCHFLMTGYTPLSL--DQKYTSVRKTTFLDVMRRLLQTKNIMVTGAVKKGAYMSILNVIQGDVDPTQVHKSLQRIKERKLANFIPWGPASIQVALAKKSPYIDSGHKVSGLMLANHTGIRSIFKVLYDQYRTFRKRDAYMNIFKQTKIFEDNLDEFDSSDEVVKNLIDEY 429          
BLAST of EY744209 vs. ExPASy Swiss-Prot
Match: TBG1_EUPCR (Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.426e-12
Identity = 39/174 (22.41%), Postives = 88/174 (50.57%), Query Frame = 1
Query:   13 LNSDLRKLAVNLIPFPRLHFFMVGFAPLT--SRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 519
            +N+DL  L  +L+P PR HF M G+ PL+   +     R  TV ++ +++   KN+M     + G Y++   + +G +   +V + +  ++ +  + F+ W P +++ ++    P    G  ++   + N T I+ +F+ + +Q+    +R A+++ +    + E    E +S+
Sbjct:  246 MNNDLVGLIASLVPTPRCHFLMTGYTPLSLIDQKVTSVRKTTVLDVMRRLLQTKNIMATGAIKKGAYMSILNIIQGDVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSKKSPYMESGHKVSGLMLANHTGIRSIFKVIYDQYRTFRKRDAYMNIFKQTKIFEDNLDEFDSS 419          
BLAST of EY744209 vs. ExPASy Swiss-Prot
Match: TBG_ENTHI (Tubulin gamma chain OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.948e-11
Identity = 42/180 (23.33%), Postives = 85/180 (47.22%), Query Frame = 1
Query:   13 LNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVK---SSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 543
            L + L  L ++L P    HF M  + PL        R   + ++ +++   +N+M     + G+Y++    F+G +S  E++E +    ++  + FV W    +K   + V  +  RG  M+   + N+TSI+  F+ + + F  MF+++ +L           EF E++  +  ++ EY
Sbjct:  244 LYNSLNSLMIHLCPSRFSHFLMTSYTPLRQVNQISSRTSAI-DVMKRLIQPQNIMARTRLKEGKYISMCDFFQGDVSYDEINEALQRFTDRRLAEFVPWNKEAIKVVHTRVSPLVKRGNRMSGMLLANNTSIRYYFQDILKAFDQMFKKRVYLQTDRDNLRKFPEFEESKEIVKCVIEEY 422          
The following BLAST results are available for this feature:
BLAST of EY744209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 413
Match NameE-valueIdentityDescription
TBG_EUPAE2.009e-1222.58Tubulin gamma chain OS=Euplotes aediculatus PE=2 S... [more]
TBG1_EUPCR3.426e-1222.41Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=... [more]
TBG_ENTHI4.948e-1123.33Tubulin gamma chain OS=Entamoeba histolytica PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-B02-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744209 ID=EY744209; Name=EY744209; organism=Citrus sinensis; type=EST; length=977bp
CCCACGCGTCCGCTGAACTCTGACCTTCGAAAGCTTGCTGTTAACTTGAT
TCCTTTCCCTCGCCTGCACTTCTTCATGGTTGGGTTTGCTCCCCTTACCT
CCCGTGGTTCTCAGCAGTACCGTGCCTTGACAGTCCCAGAACTTACCCAA
CAAATGTGGGATGCCAAGAACATGATGTGTGCTGCCGACCCAAGGCACGG
TCGTTACCTCACTGCTTCTGCCATGTTCAGGGGTAAAATGAGCACCAAGG
AAGTCGACGAGCAGATGATCAATGTTCAAAACAAAAACTCTTCCTACTTT
GTGGAGTGGATTCCAAACAATGTGAAGTCCAGTGTTTGTGACATTCCTCC
CAGAGGTCTCTCCATGGCATCCACCTTCATCGGGAACTCAACATCCATCC
AAGAAATGTTCCGAAGAGTGAGTGAGCAATTCACAGCTATGTTTAGGAGA
AAGGCTTTCCTTCACTGGTACACTGGTGAAGGAATGGATGAAATGGAGTT
CACTGAAGCTGAGAGCAATATGAATGACCTTGTGTCTGAGTACCAGCAGT
ACCAGGATGCCACCGCCGATGAGGAAGGTGAGTACAAAGATGAGGAAGAG
GGAGAAATGGAGCATATTTGAGGAAATTGTGTATGATGCATATTTGTCTG
GGTAGCTGGTTTTGTCAACCTTGCTTGGGAATGGAAAAAAATGATCCTAT
GAAGGGTTAAAATTTTTTCTTTCCCCAGTTTTTTTACCTCCAGTAACCAT
TAAAATGGGGGGAATGGAGGAAGGGGATTCAAAAAAGAATCCATTATTTG
GGGGAAGGGAAAAAATTAAAGGGAAGGGAGCCTTTTTTTTTTGAAAATAA
AAAAAGGGGGGGGCGCACCCTTTAACCCTTTACAATTCTTTTTTCGGGGG
ATTTTAAAATTCAATTTTTTTTGGATTTTCTCATTTTTTCCCCCTTAGCC
CCCTTTTGTTCTTTTTTTTTTATTGTT
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