EY744209

Overview
NameEY744209
Unique NameEY744209
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length977
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY744209 vs. ExPASy Swiss-Prot
Match: TBB_PSEAM (Tubulin beta chain OS=Pseudopleuronectes americanus PE=2 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 1.606e-94
Identity = 164/185 (88.65%), Postives = 179/185 (96.76%), Query Frame = 1 
Query:   13 LNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 567
            LN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRALTVPELTQQM+DAKNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGL M+STFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  246 LNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRMSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of EY744209 vs. ExPASy Swiss-Prot
Match: TBB_STRPU (Tubulin beta chain (Fragment) OS=Strongylocentrotus purpuratus PE=2 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 2.097e-94
Identity = 163/185 (88.11%), Postives = 179/185 (96.76%), Query Frame = 1 
Query:   13 LNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 567
            LN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRALTVPELTQQM+DAKNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGL M++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:   91 LNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 275
[Close]
BLAST of EY744209 vs. ExPASy Swiss-Prot
Match: TBB_PIG (Tubulin beta chain OS=Sus scrofa PE=1 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 2.097e-94
Identity = 163/185 (88.11%), Postives = 179/185 (96.76%), Query Frame = 1 
Query:   13 LNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 567
            LN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRALTVPELTQQM+DAKNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGL M++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  246 LNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of EY744209 vs. ExPASy Swiss-Prot
Match: TBB_PARLI (Tubulin beta chain OS=Paracentrotus lividus PE=2 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 2.097e-94
Identity = 163/185 (88.11%), Postives = 179/185 (96.76%), Query Frame = 1 
Query:   13 LNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 567
            LN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRALTVPELTQQM+DAKNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGL M++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  246 LNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of EY744209 vs. ExPASy Swiss-Prot
Match: TBB4_XENLA (Tubulin beta-4 chain OS=Xenopus laevis GN=tubb4 PE=2 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 2.097e-94
Identity = 163/185 (88.11%), Postives = 179/185 (96.76%), Query Frame = 1 
Query:   13 LNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 567
            LN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRALTVPELTQQM+DAKNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGL M++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  246 LNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of EY744209 vs. ExPASy Swiss-Prot
Match: TBB2C_RAT (Tubulin beta-2C chain OS=Rattus norvegicus GN=Tubb2c PE=1 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 2.097e-94
Identity = 163/185 (88.11%), Postives = 179/185 (96.76%), Query Frame = 1 
Query:   13 LNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 567
            LN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRALTVPELTQQM+DAKNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGL M++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  246 LNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of EY744209 vs. ExPASy Swiss-Prot
Match: TBB2C_MOUSE (Tubulin beta-2C chain OS=Mus musculus GN=Tubb2c PE=1 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 2.097e-94
Identity = 163/185 (88.11%), Postives = 179/185 (96.76%), Query Frame = 1 
Query:   13 LNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 567
            LN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRALTVPELTQQM+DAKNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGL M++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  246 LNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of EY744209 vs. ExPASy Swiss-Prot
Match: TBB2C_HUMAN (Tubulin beta-2C chain OS=Homo sapiens GN=TUBB2C PE=1 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 2.097e-94
Identity = 163/185 (88.11%), Postives = 179/185 (96.76%), Query Frame = 1 
Query:   13 LNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 567
            LN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRALTVPELTQQM+DAKNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGL M++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  246 LNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of EY744209 vs. ExPASy Swiss-Prot
Match: TBB2C_BOVIN (Tubulin beta-2C chain OS=Bos taurus GN=TUBB2C PE=2 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 2.097e-94
Identity = 163/185 (88.11%), Postives = 179/185 (96.76%), Query Frame = 1 
Query:   13 LNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 567
            LN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRALTVPELTQQM+DAKNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGL M++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  246 LNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of EY744209 vs. ExPASy Swiss-Prot
Match: TBB2_ECHMU (Tubulin beta-2 chain OS=Echinococcus multilocularis GN=TUB-2 PE=3 SV=1)

HSP 1 Score: 345.51 bits (885), Expect = 2.739e-94
Identity = 163/185 (88.11%), Postives = 179/185 (96.76%), Query Frame = 1 
Query:   13 LNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 567
            LN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRAL+VPELTQQM+DAKNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGL M++TF+GNST+IQE+FRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  246 LNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALSVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFVGNSTAIQELFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
The following BLAST results are available for this feature:
BLAST of EY744209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 413
Match NameE-valueIdentityDescription
TBB_PSEAM1.606e-9488.65Tubulin beta chain OS=Pseudopleuronectes americanu... [more]
TBB_STRPU2.097e-9488.11Tubulin beta chain (Fragment) OS=Strongylocentrotu... [more]
TBB_PIG2.097e-9488.11Tubulin beta chain OS=Sus scrofa PE=1 SV=1[more]
TBB_PARLI2.097e-9488.11Tubulin beta chain OS=Paracentrotus lividus PE=2 S... [more]
TBB4_XENLA2.097e-9488.11Tubulin beta-4 chain OS=Xenopus laevis GN=tubb4 PE... [more]
TBB2C_RAT2.097e-9488.11Tubulin beta-2C chain OS=Rattus norvegicus GN=Tubb... [more]
TBB2C_MOUSE2.097e-9488.11Tubulin beta-2C chain OS=Mus musculus GN=Tubb2c PE... [more]
TBB2C_HUMAN2.097e-9488.11Tubulin beta-2C chain OS=Homo sapiens GN=TUBB2C PE... [more]
TBB2C_BOVIN2.097e-9488.11Tubulin beta-2C chain OS=Bos taurus GN=TUBB2C PE=2... [more]
TBB2_ECHMU2.739e-9488.11Tubulin beta-2 chain OS=Echinococcus multiloculari... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-B02-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744209 ID=EY744209; Name=EY744209; organism=Citrus sinensis; type=EST; length=977bp
CCCACGCGTCCGCTGAACTCTGACCTTCGAAAGCTTGCTGTTAACTTGAT
TCCTTTCCCTCGCCTGCACTTCTTCATGGTTGGGTTTGCTCCCCTTACCT
CCCGTGGTTCTCAGCAGTACCGTGCCTTGACAGTCCCAGAACTTACCCAA
CAAATGTGGGATGCCAAGAACATGATGTGTGCTGCCGACCCAAGGCACGG
TCGTTACCTCACTGCTTCTGCCATGTTCAGGGGTAAAATGAGCACCAAGG
AAGTCGACGAGCAGATGATCAATGTTCAAAACAAAAACTCTTCCTACTTT
GTGGAGTGGATTCCAAACAATGTGAAGTCCAGTGTTTGTGACATTCCTCC
CAGAGGTCTCTCCATGGCATCCACCTTCATCGGGAACTCAACATCCATCC
AAGAAATGTTCCGAAGAGTGAGTGAGCAATTCACAGCTATGTTTAGGAGA
AAGGCTTTCCTTCACTGGTACACTGGTGAAGGAATGGATGAAATGGAGTT
CACTGAAGCTGAGAGCAATATGAATGACCTTGTGTCTGAGTACCAGCAGT
ACCAGGATGCCACCGCCGATGAGGAAGGTGAGTACAAAGATGAGGAAGAG
GGAGAAATGGAGCATATTTGAGGAAATTGTGTATGATGCATATTTGTCTG
GGTAGCTGGTTTTGTCAACCTTGCTTGGGAATGGAAAAAAATGATCCTAT
GAAGGGTTAAAATTTTTTCTTTCCCCAGTTTTTTTACCTCCAGTAACCAT
TAAAATGGGGGGAATGGAGGAAGGGGATTCAAAAAAGAATCCATTATTTG
GGGGAAGGGAAAAAATTAAAGGGAAGGGAGCCTTTTTTTTTTGAAAATAA
AAAAAGGGGGGGGCGCACCCTTTAACCCTTTACAATTCTTTTTTCGGGGG
ATTTTAAAATTCAATTTTTTTTGGATTTTCTCATTTTTTCCCCCTTAGCC
CCCTTTTGTTCTTTTTTTTTTATTGTT
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