EY660558

Overview
NameEY660558
Unique NameEY660558
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length918
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660558 vs. ExPASy Swiss-Prot
Match: CLPB_GEOSL (Chaperone protein clpB OS=Geobacter sulfurreducens GN=clpB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.953e-32
Identity = 36/59 (61.02%), Postives = 45/59 (76.27%), Query Frame = 2
Query:  383 LEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKQQLQKAL 559
            L +Y  +LT LA +GKLDPV+GR  +I RV+Q+L RRTKNNP LIGEPGVGK  + + L
Sbjct:  163 LAKYARDLTDLARQGKLDPVIGRDDEIRRVLQVLSRRTKNNPVLIGEPGVGKTAIVEGL 221          

HSP 2 Score: 73.559 bits (179), Expect = 3.953e-32
Identity = 44/96 (45.83%), Postives = 64/96 (66.67%), Query Frame = 1
Query:  532 G*TAIAEGLAXRLQVVMFLIPLKERGYLPW-IWSSCCGNKYRGEFEERLEKPMEEIXQRD-EIFLFIDEGHTLIRARTAKGAMDAANILEPSLAQG 813
            G TAI EGLA R+        LK++  +   + +   G KYRGEFEERL+  + E+ + + ++ LFIDE HTL+ A  A+GAMDA+N+L+P+LA+G
Sbjct:  213 GKTAIVEGLAQRIVSGDVPETLKDKRLVALDMGALIAGAKYRGEFEERLKAVIREVAKSEGKVILFIDELHTLVGAGAAEGAMDASNMLKPALARG 308          

HSP 3 Score: 28.8758 bits (63), Expect = 3.953e-32
Identity = 13/19 (68.42%), Postives = 16/19 (84.21%), Query Frame = 3
Query:  813 KLQWIGATTLDEYRKPLEK 869
            +L  IGATTL+EYRK +EK
Sbjct:  309 ELHCIGATTLNEYRKYIEK 327          
BLAST of EY660558 vs. ExPASy Swiss-Prot
Match: CLPB_DESVH (Chaperone protein clpB OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=clpB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.953e-32
Identity = 45/96 (46.88%), Postives = 61/96 (63.54%), Query Frame = 1
Query:  532 G*TAIAEGLAXRLQVVMFLIPLKERGYLPW-IWSSCCGNKYRGEFEERLEKPMEEIXQRD-EIFLFIDEGHTLIRARTAKGAMDAANILEPSLAQG 813
            G TAI EGLA R+        LKERG     + +   G KYRGEFEERL+  ++E+ + +  I +FIDE HT++ A    GAMDA+N+L+P LA+G
Sbjct:  216 GKTAIVEGLAHRILKGDVPEGLKERGLFALDMGALIAGAKYRGEFEERLKAVLKEVEKSEGRIIMFIDELHTIVGAGKTDGAMDASNLLKPMLARG 311          

HSP 2 Score: 73.559 bits (179), Expect = 3.953e-32
Identity = 34/59 (57.63%), Postives = 45/59 (76.27%), Query Frame = 2
Query:  383 LEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKQQLQKAL 559
            L++YG +L + A +GKLDPV+GR  +I RV++IL RRTKNNP LIGE GVGK  + + L
Sbjct:  166 LQKYGRDLVEEARKGKLDPVIGRDAEIRRVIRILSRRTKNNPVLIGEAGVGKTAIVEGL 224          

HSP 3 Score: 32.3426 bits (72), Expect = 3.953e-32
Identity = 15/21 (71.43%), Postives = 17/21 (80.95%), Query Frame = 3
Query:  813 KLQWIGATTLDEYRKPLEKIP 875
            +L  IGATTLDEYRK +EK P
Sbjct:  312 ELHCIGATTLDEYRKYIEKDP 332          
BLAST of EY660558 vs. ExPASy Swiss-Prot
Match: CLPB_WOLSU (Chaperone protein clpB OS=Wolinella succinogenes GN=clpB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.953e-32
Identity = 43/95 (45.26%), Postives = 64/95 (67.37%), Query Frame = 1
Query:  532 G*TAIAEGLAXRLQVVMFLIPLKERGYLPWIWSSC-CGNKYRGEFEERLEKPMEEIXQRDEIFLFIDEGHTLIRARTAKGAMDAANILEPSLAQG 813
            G TA+ EGLA R+      + L+ +  +    S+   G KYRGEFE+RL+K +EE+ +   + LFIDE HT++ A  ++G+MDAANIL+P+LA+G
Sbjct:  211 GKTAVVEGLAQRIIAKEVPLSLQNKRVVALDMSALIAGAKYRGEFEDRLKKVVEEVKKAGNVILFIDEIHTIVGAGASEGSMDAANILKPALARG 305          

HSP 2 Score: 72.4034 bits (176), Expect = 3.953e-32
Identity = 34/62 (54.84%), Postives = 47/62 (75.81%), Query Frame = 2
Query:  374 MPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKQQLQKAL 559
            + +L +YG +LT+ A E KLDPV+GR  +I R++QIL R+TKNNP L+GEPGVGK  + + L
Sbjct:  158 LESLAKYGIDLTQKALENKLDPVIGRDEEISRMMQILIRKTKNNPILLGEPGVGKTAVVEGL 219          

HSP 3 Score: 27.335 bits (59), Expect = 3.953e-32
Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 3
Query:  813 KLQWIGATTLDEYRKPLEK 869
            +L  IGATTL EYRK  EK
Sbjct:  306 ELHTIGATTLKEYRKYFEK 324          
BLAST of EY660558 vs. ExPASy Swiss-Prot
Match: CLPB_CHLMU (Chaperone protein clpB OS=Chlamydia muridarum GN=clpB PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.134e-32
Identity = 38/59 (64.41%), Postives = 45/59 (76.27%), Query Frame = 2
Query:  383 LEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKQQLQKAL 559
            LE+Y  NLT LA EGKLDPV+GR  +I R +Q+L RRTKNNP LIGEPGVGK  + + L
Sbjct:  160 LEKYCKNLTILAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPMLIGEPGVGKTAIAEGL 218          

HSP 2 Score: 72.0182 bits (175), Expect = 5.134e-32
Identity = 47/98 (47.96%), Postives = 65/98 (66.33%), Query Frame = 1
Query:  532 G*TAIAEGLAXRLQVVMFLIP--LKERG-YLPWIWSSCCGNKYRGEFEERLEKPMEEIXQRD-EIFLFIDEGHTLIRARTAKGAMDAANILEPSLAQG 813
            G TAIAEGLA  L++V   +P  LK++  Y+  + +   G KYRGEFEERL+  ++ +   +    LFIDE HTL+ A    GAMDAAN+L+P+LA+G
Sbjct:  210 GKTAIAEGLA--LRIVQGDVPESLKDKHLYVLDMGALIAGAKYRGEFEERLKSVLKGVEASEGACILFIDEVHTLVGAGATDGAMDAANLLKPALARG 305          

HSP 3 Score: 26.9498 bits (58), Expect = 5.134e-32
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  816 LQWIGATTLDEYRKPLEK 869
            L  IGATTL+EY+K +EK
Sbjct:  307 LHCIGATTLNEYQKYIEK 324          
BLAST of EY660558 vs. ExPASy Swiss-Prot
Match: CLPB_STRAL (Chaperone protein clpB OS=Streptomyces albus G GN=clpB PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.135e-32
Identity = 37/59 (62.71%), Postives = 45/59 (76.27%), Query Frame = 2
Query:  383 LEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKQQLQKAL 559
            LE++GT+ T  A E KLDPV+GR  +I RVVQ+L RRTKNNP LIGEPGVGK  + + L
Sbjct:  162 LEKFGTDFTAAARERKLDPVIGRDQEIRRVVQVLSRRTKNNPVLIGEPGVGKTAVVEGL 220          

HSP 2 Score: 69.707 bits (169), Expect = 5.135e-32
Identity = 43/96 (44.79%), Postives = 59/96 (61.46%), Query Frame = 1
Query:  532 G*TAIAEGLAXRLQVVMFLIPLKERGYLPW-IWSSCCGNKYRGEFEERLEKPMEEIXQRD-EIFLFIDEGHTLIRARTAKGAMDAANILEPSLAQG 813
            G TA+ EGLA R+        LK++  +   + +   G KYRGEFEERL+  + EI + D +I  FIDE HT++ A  A  AMDA N+L+P LA+G
Sbjct:  212 GKTAVVEGLAQRIVKGDVPESLKDKRLVSLDLGAMVAGAKYRGEFEERLKTVLSEIKESDGQIVTFIDELHTVVGAGAADSAMDAGNMLKPMLARG 307          

HSP 3 Score: 31.5722 bits (70), Expect = 5.135e-32
Identity = 13/21 (61.90%), Postives = 18/21 (85.71%), Query Frame = 3
Query:  813 KLQWIGATTLDEYRKPLEKIP 875
            +L+ +GATTLDEYR+ +EK P
Sbjct:  308 ELRMVGATTLDEYRERIEKDP 328          
BLAST of EY660558 vs. ExPASy Swiss-Prot
Match: CLPB_PSEAE (Chaperone protein clpB OS=Pseudomonas aeruginosa GN=clpB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.670e-32
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 2
Query:  383 LEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKQQLQKAL 559
            L++Y  ++TK AEEGKLDPV+GR  +I R +Q+L RRTKNNP LIGEPGVGK  + + L
Sbjct:  161 LDKYTVDMTKRAEEGKLDPVIGRDDEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGL 219          

HSP 2 Score: 71.2478 bits (173), Expect = 6.670e-32
Identity = 43/96 (44.79%), Postives = 63/96 (65.62%), Query Frame = 1
Query:  532 G*TAIAEGLAXRLQVVMFLIPLKERGYLPW-IWSSCCGNKYRGEFEERLEKPMEEIXQRD-EIFLFIDEGHTLIRARTAKGAMDAANILEPSLAQG 813
            G TAI EGLA R+        LK++  L   + +   G K+RGEFEERL+  + E+ +++  + LFIDE HT++ A  A+GAMDA N+L+P+LA+G
Sbjct:  211 GKTAIVEGLAQRIINGEVPDGLKDKRLLALDMGALIAGAKFRGEFEERLKAVLNELGKQEGRVILFIDELHTMVGAGKAEGAMDAGNMLKPALARG 306          

HSP 3 Score: 28.8758 bits (63), Expect = 6.670e-32
Identity = 12/19 (63.16%), Postives = 16/19 (84.21%), Query Frame = 3
Query:  813 KLQWIGATTLDEYRKPLEK 869
            +L  +GATTLDEYR+ +EK
Sbjct:  307 ELHCVGATTLDEYRQYIEK 325          
BLAST of EY660558 vs. ExPASy Swiss-Prot
Match: CLPB_MYCPA (Chaperone protein clpB OS=Mycobacterium paratuberculosis GN=clpB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 6.671e-32
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 2
Query:  383 LEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKQQLQKAL 559
            LE+Y T+LT  A EGKLDPV+GR  +I RVVQ+L RRTKNNP LIGEPGVGK  + + L
Sbjct:  161 LEKYSTDLTARAREGKLDPVIGRDNEIRRVVQVLSRRTKNNPVLIGEPGVGKTAIVEGL 219          

HSP 2 Score: 66.6254 bits (161), Expect = 6.671e-32
Identity = 42/97 (43.30%), Postives = 60/97 (61.86%), Query Frame = 1
Query:  532 G*TAIAEGLAXRLQVVMFLIPLKERGYLPW-IWSSCCGNKYRGEFEERLEKPMEEI-XQRDEIFLFIDEGHTLIRA-RTAKGAMDAANILEPSLAQG 813
            G TAI EGLA R+        L+++  +   + S   G KYRGEFEERL+  +++I     +I  FIDE HT++ A  T +GAMDA N+++P LA+G
Sbjct:  211 GKTAIVEGLAQRIVAGDVPESLRDKTVIALDLGSMVAGAKYRGEFEERLKAVLDDIKNSAGQIITFIDELHTIVGAGATGEGAMDAGNMIKPMLARG 307          

HSP 3 Score: 30.8018 bits (68), Expect = 6.671e-32
Identity = 13/19 (68.42%), Postives = 17/19 (89.47%), Query Frame = 3
Query:  813 KLQWIGATTLDEYRKPLEK 869
            +L+ +GATTLDEYRK +EK
Sbjct:  308 ELRLVGATTLDEYRKYIEK 326          
BLAST of EY660558 vs. ExPASy Swiss-Prot
Match: CLPB_MYCTU (Chaperone protein clpB OS=Mycobacterium tuberculosis GN=clpB PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.671e-32
Identity = 38/59 (64.41%), Postives = 46/59 (77.97%), Query Frame = 2
Query:  383 LEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKQQLQKAL 559
            L++Y T+LT  A EGKLDPV+GR  +I RVVQ+L RRTKNNP LIGEPGVGK  + + L
Sbjct:  161 LQKYSTDLTARAREGKLDPVIGRDNEIRRVVQVLSRRTKNNPVLIGEPGVGKTAIVEGL 219          

HSP 2 Score: 67.3958 bits (163), Expect = 6.671e-32
Identity = 42/97 (43.30%), Postives = 61/97 (62.89%), Query Frame = 1
Query:  532 G*TAIAEGLAXRLQVVMFLIPLKERGYLPW-IWSSCCGNKYRGEFEERLEKPMEEI-XQRDEIFLFIDEGHTLIRA-RTAKGAMDAANILEPSLAQG 813
            G TAI EGLA R+        L+++  +   + S   G+KYRGEFEERL+  +++I     +I  FIDE HT++ A  T +GAMDA N+++P LA+G
Sbjct:  211 GKTAIVEGLAQRIVAGDVPESLRDKTIVALDLGSMVAGSKYRGEFEERLKAVLDDIKNSAGQIITFIDELHTIVGAGATGEGAMDAGNMIKPMLARG 307          

HSP 3 Score: 31.187 bits (69), Expect = 6.671e-32
Identity = 13/19 (68.42%), Postives = 17/19 (89.47%), Query Frame = 3
Query:  813 KLQWIGATTLDEYRKPLEK 869
            +L+ +GATTLDEYRK +EK
Sbjct:  308 ELRLVGATTLDEYRKHIEK 326          
BLAST of EY660558 vs. ExPASy Swiss-Prot
Match: CLPB_MYCBO (Chaperone protein clpB OS=Mycobacterium bovis GN=clpB PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.671e-32
Identity = 38/59 (64.41%), Postives = 46/59 (77.97%), Query Frame = 2
Query:  383 LEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKQQLQKAL 559
            L++Y T+LT  A EGKLDPV+GR  +I RVVQ+L RRTKNNP LIGEPGVGK  + + L
Sbjct:  161 LQKYSTDLTARAREGKLDPVIGRDNEIRRVVQVLSRRTKNNPVLIGEPGVGKTAIVEGL 219          

HSP 2 Score: 67.3958 bits (163), Expect = 6.671e-32
Identity = 42/97 (43.30%), Postives = 61/97 (62.89%), Query Frame = 1
Query:  532 G*TAIAEGLAXRLQVVMFLIPLKERGYLPW-IWSSCCGNKYRGEFEERLEKPMEEI-XQRDEIFLFIDEGHTLIRA-RTAKGAMDAANILEPSLAQG 813
            G TAI EGLA R+        L+++  +   + S   G+KYRGEFEERL+  +++I     +I  FIDE HT++ A  T +GAMDA N+++P LA+G
Sbjct:  211 GKTAIVEGLAQRIVAGDVPESLRDKTIVALDLGSMVAGSKYRGEFEERLKAVLDDIKNSAGQIITFIDELHTIVGAGATGEGAMDAGNMIKPMLARG 307          

HSP 3 Score: 31.187 bits (69), Expect = 6.671e-32
Identity = 13/19 (68.42%), Postives = 17/19 (89.47%), Query Frame = 3
Query:  813 KLQWIGATTLDEYRKPLEK 869
            +L+ +GATTLDEYRK +EK
Sbjct:  308 ELRLVGATTLDEYRKHIEK 326          
BLAST of EY660558 vs. ExPASy Swiss-Prot
Match: CLPB2_SYNE7 (Chaperone protein clpB 2 OS=Synechococcus elongatus (strain PCC 7942) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.654e-32
Identity = 37/61 (60.66%), Postives = 47/61 (77.05%), Query Frame = 2
Query:  377 PTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKQQLQKAL 559
            P L +YG +LT LAE+ KLDPV+GR  +I RV+Q+L RR+KNNP LIGEPGVGK  + + L
Sbjct:  163 PFLSKYGRDLTALAEQEKLDPVIGRDLEIRRVIQVLSRRSKNNPVLIGEPGVGKTAIAEGL 223          

HSP 2 Score: 68.5514 bits (166), Expect = 8.654e-32
Identity = 45/98 (45.92%), Postives = 59/98 (60.20%), Query Frame = 1
Query:  532 G*TAIAEGLAXRLQVVMFLIPLKERGYLPW-IWSSCCGNKYRGEFEERLEKPMEEIXQRD-EIFLFIDEGHTLIRARTAK--GAMDAANILEPSLAQG 813
            G TAIAEGLA R+        LK+R  +   + S   G KYRGEFEERL   + E+   D ++ LFIDE HT++ A   +   AMDA N+L+P LA+G
Sbjct:  215 GKTAIAEGLAQRIVAGEVPDSLKQRRLISLDMGSLIAGAKYRGEFEERLRAVLHEVTHSDGQMVLFIDELHTVVGAGAGQQGSAMDAGNLLKPMLARG 312          

HSP 3 Score: 30.4166 bits (67), Expect = 8.654e-32
Identity = 13/21 (61.90%), Postives = 17/21 (80.95%), Query Frame = 3
Query:  813 KLQWIGATTLDEYRKPLEKIP 875
            +L+ IGATT DEYR+ +EK P
Sbjct:  313 ELRCIGATTTDEYRRTIEKDP 333          
The following BLAST results are available for this feature:
BLAST of EY660558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
CLPB_GEOSL3.953e-3261.02Chaperone protein clpB OS=Geobacter sulfurreducens... [more]
CLPB_DESVH3.953e-3246.88Chaperone protein clpB OS=Desulfovibrio vulgaris (... [more]
CLPB_WOLSU3.953e-3245.26Chaperone protein clpB OS=Wolinella succinogenes G... [more]
CLPB_CHLMU5.134e-3264.41Chaperone protein clpB OS=Chlamydia muridarum GN=c... [more]
CLPB_STRAL5.135e-3262.71Chaperone protein clpB OS=Streptomyces albus G GN=... [more]
CLPB_PSEAE6.670e-3261.02Chaperone protein clpB OS=Pseudomonas aeruginosa G... [more]
CLPB_MYCPA6.671e-3266.10Chaperone protein clpB OS=Mycobacterium paratuberc... [more]
CLPB_MYCTU6.671e-3264.41Chaperone protein clpB OS=Mycobacterium tuberculos... [more]
CLPB_MYCBO6.671e-3264.41Chaperone protein clpB OS=Mycobacterium bovis GN=c... [more]
CLPB2_SYNE78.654e-3260.66Chaperone protein clpB 2 OS=Synechococcus elongatu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-023-E05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660558 ID=EY660558; Name=EY660558; organism=Citrus sinensis; type=EST; length=918bp
CGTGTCTTGGAGCTTTCTCTGGAGGAAGCCCGCCAGCTGGGCCATAATTA
TATTGGGTCCGAGCATCTTCTCCTTGGGCTTCTTCGTGAAGGGGAAGGTG
TAGCAGCCCGTGTTCTTGAGAATTTAGGTGCTGACCCTAGTAACATCCGC
ACACAGGCAAGCAACAGTTCTTATCATTTGTGTTCCAATCTGATTTTCTT
TCCTCGAGACCTGTTTCATTGCTAGCTTTGTTAAATAAAAAATTGATTTG
ATATTCTTAGTAAAAGATATAAATAGGCAAAGCTTTTGTTGGAGTGAACA
GGTTATTCGTATGGTTGGTGAGAGCACAGAAGCTGTTGGCGCTGGTGTTG
GAGGAGGAAGCAGTGGCAACAAGATGCCAACACTGGAGGAGTATGGAACA
AATTTGACTAAGCTAGCAGAGGAGGGAAAATTGGATCCTGTTGTTGGGAG
ACAGCCACAAATAGAGCGTGTTGTCCAAATTTTGGGCCGTCGAACTAAGA
ATAATCCATGTCTTATTGGAGAACCTGGTGTGGGTAAACAGCAATTGCAG
AAGGCCTTGCTCNACGATTGCAAGTGGTGATGTTCCTGATACCATTGAAG
GAAAGAGGTTATTTACCCTGGATATGGTCTTCTTGTTGCGGNAACAAATA
TCGTGGAGAGTTTGAAGAAAGATTGGAGAAACCTATGGAGGAAATCNAAC
AGAGGGATGAAATATTCCTATTCATTGATGAGGGGCACACTTTAATCCGC
GCAAGAACAGCAAAAGGGGCTATGGATGCTGCTAACATCCTGGAGCCATC
TCTTGCCCAAGGAAATTACAGTGGATTGGTGCCACCACCCTAGATGAATA
TAGAAAGCCCTTGGAAAAGATCCCGCTTTAAAAGACGTTCCCCGCCAGTT
AAGGCCCAAACCGCCGGG
back to top