EY660556

Overview
NameEY660556
Unique NameEY660556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660556 vs. ExPASy Swiss-Prot
Match: PSAD_PORPU (Photosystem I reaction center subunit II OS=Porphyra purpurea GN=psaD PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.493e-42
Identity = 86/140 (61.43%), Postives = 101/140 (72.14%), Query Frame = 3
Query:  219 PPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI-*YQFYRVFPNGEAQYLHPKDGVYPEKMNPRKEGVGQNYTPIGKNVSPIEGKFTGKQGHD 635
            P  ++ N PSP FGGSTGG LR A+VEE Y ITW    E  FEMPTGG A MR+G NLL LA+KEQCLALGT+L+ K+KI  Y+ YRVFPNGE QYLHPKDGV+PEK+N  +  +      IGKNV+PI  KFT K  +D
Sbjct:    2 PDTINLNMPSPTFGGSTGGWLRAAEVEEKYAITWTGKNESKFEMPTGGTATMRDGENLLYLAKKEQCLALGTQLKGKFKISDYKIYRVFPNGEVQYLHPKDGVFPEKVNAGRASINSVDHSIGKNVNPINVKFTNKATYD 141          
BLAST of EY660556 vs. ExPASy Swiss-Prot
Match: PSAD_ODOSI (Photosystem I reaction center subunit II OS=Odontella sinensis GN=psaD PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.344e-42
Identity = 86/131 (65.65%), Postives = 98/131 (74.81%), Query Frame = 3
Query:  228 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI*YQFYRVFPNGEAQYLHPKDGVYPEKMNPRKEGVGQNYTPIGKNVSPIEGKFTG 620
            L+  TP P FGGSTGG LR A+VEE Y ITW S KEQIFEMPTGGAAIMR G NLL LARKEQCLALGT+LR+     Y+ YR+FP+GE QYLHPKDGV+PEK+NP +  V      IGKN +P   KF+G
Sbjct:    3 LNLQTPFPTFGGSTGGWLRAAEVEEKYAITWTSKKEQIFEMPTGGAAIMRNGENLLYLARKEQCLALGTQLRTFKINDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGRTSVNSRGFSIGKNPNPASIKFSG 133          
BLAST of EY660556 vs. ExPASy Swiss-Prot
Match: PSAD_PORYE (Photosystem I reaction center subunit II OS=Porphyra yezoensis GN=psaD PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.677e-42
Identity = 84/140 (60.00%), Postives = 101/140 (72.14%), Query Frame = 3
Query:  219 PPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI-*YQFYRVFPNGEAQYLHPKDGVYPEKMNPRKEGVGQNYTPIGKNVSPIEGKFTGKQGHD 635
            P  ++ N PSP FGGSTGG LR A+VEE Y ITW    E  FEMPTGG A MR G NLL LA+KEQCLALGT+L+SK+KI  Y+ YRVFPNGE QYLHPKDGV+PEK+N  +  V      IG+N++P++ KF  K  +D
Sbjct:    2 PDTINLNMPSPTFGGSTGGWLRAAEVEEKYAITWTGKNESKFEMPTGGTATMRNGENLLYLAKKEQCLALGTQLKSKFKISDYKIYRVFPNGEVQYLHPKDGVFPEKVNTGRASVNSVDHSIGQNINPVDVKFMNKATYD 141          
BLAST of EY660556 vs. ExPASy Swiss-Prot
Match: PSAD_SKECO (Photosystem I reaction center subunit II OS=Skeletonema costatum GN=psaD PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.803e-41
Identity = 84/131 (64.12%), Postives = 97/131 (74.05%), Query Frame = 3
Query:  228 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI*YQFYRVFPNGEAQYLHPKDGVYPEKMNPRKEGVGQNYTPIGKNVSPIEGKFTG 620
            L+  TP P FGGSTGG LR A+VEE Y ITW S KEQIFEMPTGG+AIMR G NLL LARKEQCLAL T+LR+     Y+ YR+FP+GE QYLHPKDGV+PEK+NP +  V      IGKN +P   KF+G
Sbjct:    3 LNLKTPFPTFGGSTGGWLRAAEVEEKYAITWTSAKEQIFEMPTGGSAIMRNGENLLYLARKEQCLALSTQLRTFKINDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGRTSVNSRGFSIGKNPNPASIKFSG 133          
BLAST of EY660556 vs. ExPASy Swiss-Prot
Match: PSAD_MASLA (Photosystem I reaction center subunit II OS=Mastigocladus laminosus GN=psaD PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.803e-41
Identity = 80/130 (61.54%), Postives = 100/130 (76.92%), Query Frame = 3
Query:  246 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI*YQFYRVFPNGEAQYLHPKDGVYPEKMNPRKEGVGQNYTPIGKNVSPIEGKFTGKQGHD 635
            +PIFGGSTGGLL+KA+VEE Y ITW SPKEQ+FEMPTGGAA MR+G NLL LARKEQC+ALG++LR      Y+ YR++PNGE  Y+HP DGV+PEK+NP ++ V  N   IG+N  P + KF+G   +D
Sbjct:    9 TPIFGGSTGGLLKKAEVEEKYAITWTSPKEQVFEMPTGGAAKMRQGQNLLYLARKEQCIALGSQLRRLKITDYKIYRIYPNGETAYIHPADGVFPEKVNPGRQKVRYNDRRIGQNPDPAKLKFSGVATYD 138          
BLAST of EY660556 vs. ExPASy Swiss-Prot
Match: PSAD_SYNY3 (Photosystem I reaction center subunit II OS=Synechocystis sp. (strain PCC 6803) GN=psaD PE=1 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 1.183e-39
Identity = 82/133 (61.65%), Postives = 98/133 (73.68%), Query Frame = 3
Query:  249 PIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYK---I*YQFYRVFPNGEAQYLHPKDGVYPEKMNPRKEGVGQNYTPIGKNVSPIEGKFTGKQGHDL 638
            P FGGSTGGLL KA  EE Y ITW S  EQ+FEMPTGGAAIM EG NLL LARKEQCLALGT+LR+K+K     Y+ YRV+P+GE QYLHP DGV+PEK+N  +E  G     IG+N  P+  KF+GK  +++
Sbjct:    9 PKFGGSTGGLLSKANREEKYAITWTSASEQVFEMPTGGAAIMNEGENLLYLARKEQCLALGTQLRTKFKPKIQDYKIYRVYPSGEVQYLHPADGVFPEKVNEGREAQGTKTRRIGQNPEPVTIKFSGKAPYEV 141          
BLAST of EY660556 vs. ExPASy Swiss-Prot
Match: PSAD_SYNP6 (Photosystem I reaction center subunit II OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psaD PE=1 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 1.889e-37
Identity = 77/130 (59.23%), Postives = 95/130 (73.08%), Query Frame = 3
Query:  246 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYK---I*YQFYRVFPNGEAQYLHPKDGVYPEKMNPRKEGVGQNYTPIGKNVSPIEGKFTGKQ 626
            +P+FGGSTGGLL+ A+ EE Y ITW S KEQ+FE+PTGGAA+M EG NLL  ARKEQ LALGT+LR+K+K     Y+ YR FP  +  YLHPKDGV+PEK+N  +   G+    IG+N +P   KFTGKQ
Sbjct:    9 TPVFGGSTGGLLKSAETEEKYAITWTSTKEQVFELPTGGAAVMHEGDNLLYFARKEQALALGTQLRTKFKPKIESYKIYRFFPGADVGYLHPKDGVFPEKVNEGRSFAGKVDRRIGQNPNPATIKFTGKQ 138          
BLAST of EY660556 vs. ExPASy Swiss-Prot
Match: PSAD_CYACA (Photosystem I reaction center subunit II OS=Cyanidium caldarium GN=psaD PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.889e-37
Identity = 77/133 (57.89%), Postives = 99/133 (74.44%), Query Frame = 3
Query:  228 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI-*YQFYRVFPNGEAQYLHPKDGVYPEKMNPRKEGVGQNYTPIGKNVSPIEGKFTGK 623
            L+   PSP F G+TGG LR + +EE Y ITW S  E IFE+PTGG A M+ G NLL LA+KEQCLALG +L+ K+KI  ++ YR+FPNGEAQ+LHPKDGV+PEK+N  ++ +G+    IGKN++P E KFT K
Sbjct:    5 LNLKMPSPEFYGNTGGWLRSSDIEEKYAITWSSKNEDIFEIPTGGVAKMKAGDNLLYLAKKEQCLALGNQLKIKFKILNFKIYRIFPNGEAQFLHPKDGVFPEKVNEGRKPIGKIDHNIGKNLNPAEVKFTHK 137          
BLAST of EY660556 vs. ExPASy Swiss-Prot
Match: PSAD_THEVL (Photosystem I reaction center subunit II OS=Thermosynechococcus vulcanus GN=psaD PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.599e-36
Identity = 75/130 (57.69%), Postives = 94/130 (72.31%), Query Frame = 3
Query:  249 PIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGT-RLRSKYKI*YQFYRVFPNGEAQYLHPKDGVYPEKMNPRKEGVGQNYTPIGKNVSPIEGKFTGKQGHD 635
            P++GGSTGGLL  A  EE Y ITW SPKEQ+FEMPT GAA+MREG NL+  ARKEQCLAL   +LR +    Y+ YR+FP+GE   +HPKDGV+PEK+N  +E V      IG+N +P + KFTGK+ +D
Sbjct:    9 PLYGGSTGGLLSAADTEEKYAITWTSPKEQVFEMPTAGAAVMREGENLVYFARKEQCLALAAQQLRPRKINDYKIYRIFPDGETVLIHPKDGVFPEKVNKGREAVNSVPRSIGQNPNPSQLKFTGKKPYD 138          
BLAST of EY660556 vs. ExPASy Swiss-Prot
Match: PSAD_THEEB (Photosystem I reaction center subunit II OS=Thermosynechococcus elongatus (strain BP-1) GN=psaD PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.599e-36
Identity = 75/130 (57.69%), Postives = 94/130 (72.31%), Query Frame = 3
Query:  249 PIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGT-RLRSKYKI*YQFYRVFPNGEAQYLHPKDGVYPEKMNPRKEGVGQNYTPIGKNVSPIEGKFTGKQGHD 635
            P++GGSTGGLL  A  EE Y ITW SPKEQ+FEMPT GAA+MREG NL+  ARKEQCLAL   +LR +    Y+ YR+FP+GE   +HPKDGV+PEK+N  +E V      IG+N +P + KFTGK+ +D
Sbjct:    9 PLYGGSTGGLLSAADTEEKYAITWTSPKEQVFEMPTAGAAVMREGENLVYFARKEQCLALAAQQLRPRKINDYKIYRIFPDGETVLIHPKDGVFPEKVNKGREAVNSVPRSIGQNPNPSQLKFTGKKPYD 138          
The following BLAST results are available for this feature:
BLAST of EY660556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PSAD_PORPU1.493e-4261.43Photosystem I reaction center subunit II OS=Porphy... [more]
PSAD_ODOSI4.344e-4265.65Photosystem I reaction center subunit II OS=Odonte... [more]
PSAD_PORYE9.677e-4260.00Photosystem I reaction center subunit II OS=Porphy... [more]
PSAD_SKECO4.803e-4164.12Photosystem I reaction center subunit II OS=Skelet... [more]
PSAD_MASLA4.803e-4161.54Photosystem I reaction center subunit II OS=Mastig... [more]
PSAD_SYNY31.183e-3961.65Photosystem I reaction center subunit II OS=Synech... [more]
PSAD_SYNP61.889e-3759.23Photosystem I reaction center subunit II OS=Synech... [more]
PSAD_CYACA1.889e-3757.89Photosystem I reaction center subunit II OS=Cyanid... [more]
PSAD_THEVL1.599e-3657.69Photosystem I reaction center subunit II OS=Thermo... [more]
PSAD_THEEB1.599e-3657.69Photosystem I reaction center subunit II OS=Thermo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-023-E02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660556 ID=EY660556; Name=EY660556; organism=Citrus sinensis; type=EST; length=850bp
TTCCCCAACCCACGCGTCCGGCCATGGCCGCAACAACTCAAGCCTCTCTC
TTCGCACCGGCCAACTTCTCCACCACCAAATCCTCTGCGCCGCGGAAGCA
ATCATCATCATTTTCAGTAAGGCCACTAAAACATAATGCCCCACGTACCA
ACACCATCAAGGCCATGGCTGAGGGAAAAACAGAGACACCCACAAAAGAG
GCTCCGGTGGGCTTCACCCCACCAGAACTGGACCCCAACACCCCATCTCC
GATCTTCGGAGGCAGCACCGGCGGGCTGCTGCGGAAGGCTCAGGTGGAAG
AGTTTTATGTGATCACATGGGAGTCTCCTAAGGAGCAAATATTTGAAATG
CCCACTGGGGGTGCGGCCATTATGAGAGAAGGTCCGAATTTGCTGAAGCT
GGCTAGGAAAGAGCAGTGCTTGGCTCTGGGGACAAGGCTGAGGTCCAAGT
ACAAGATTTAATACCAGTTTTACCGAGTGTTTCCCAACGGAGAGGCTCAG
TATTTGCATCCCAAGGATGGTGTTTATCCTGAAAAAATGAACCCCCGGAA
GGAAGGAGTTGGGCAGAATTACACGCCTATTGGTAAGAATGTGAGTCCTA
TTGAGGGCAAGTTTACCGGGAAACAAGGGCATGATCTGCAAATTTAAAAT
GGAAGCTGCTAACCTGACGGGCCTCGGATGAACTGCTCATTAATTGCTGG
GACCCTTAATTGGGTGGAATACGGCGTTTCTTTTCCTAAAAAAAATGAAT
GAAAAAAGAATGGAACCCTGAAACTTTTTAACCATGCAAATCCCCTTTTA
TAGAAAAAAACAACACCACCCTCGCTCGGGCCACAAAAAAGATAAAATGT
back to top