EY660550

Overview
NameEY660550
Unique NameEY660550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660550 vs. ExPASy Swiss-Prot
Match: RS4E_HALSA (30S ribosomal protein S4e OS=Halobacterium salinarium GN=rps4e PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.716e-19
Identity = 59/212 (27.83%), Postives = 98/212 (46.23%), Query Frame = 1
Query:   94 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFEN-IHIQDALG 726
            +  H KRL+ PK W +++    F  K  +GPH     +PL++VLR+ L+Y     E    +    VLV+G    D   P G  D+++ P  +E +R+  D  GR  L  +  + A  KL KV        G   +N +DG  +   +      D++ +D + N+I    +++ G +V    G++ G +G I       GS  N + + D  G
Sbjct:    1 MTNHQKRLSVPKSWPVERKTETFTAKAGAGPH-GESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHDGSNLALDEDAYAGGDSVVVDTDTNEIVAHFQYEEGALVTAVAGQHAGDIGEIAEINVQPGSASNTVRVDDENG 211          
BLAST of EY660550 vs. ExPASy Swiss-Prot
Match: RS4E_HALS3 (30S ribosomal protein S4e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.716e-19
Identity = 59/212 (27.83%), Postives = 98/212 (46.23%), Query Frame = 1
Query:   94 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFEN-IHIQDALG 726
            +  H KRL+ PK W +++    F  K  +GPH     +PL++VLR+ L+Y     E    +    VLV+G    D   P G  D+++ P  +E +R+  D  GR  L  +  + A  KL KV        G   +N +DG  +   +      D++ +D + N+I    +++ G +V    G++ G +G I       GS  N + + D  G
Sbjct:    1 MTNHQKRLSVPKSWPVERKTETFTAKAGAGPH-GESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHDGSNLALDEDAYAGGDSVVVDTDTNEIVAHFQYEEGALVTAVAGQHAGDIGEIAEINVQPGSASNTVRVDDENG 211          
BLAST of EY660550 vs. ExPASy Swiss-Prot
Match: RS4E_HALLT (30S ribosomal protein S4e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps4e PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.657e-18
Identity = 57/204 (27.94%), Postives = 99/204 (48.53%), Query Frame = 1
Query:   94 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRY-PDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFEN 702
            + +H KRL  P  W +++    F  K  +GPH     +PL+++LR+ L Y  + +E    L    VLV+G   +D+  P G  D+++ P+  E FR+  D  GR  L S+ +E A  +L K+ +      G   +  +DG  +    D      D+I +D E   +    +++ G +V    G++ GR+G + + +   GS  N
Sbjct:    1 MTRHQKRLAVPNSWPVERKTNTFTVKAGAGPH-GEAGVPLVVLLRDVLGYVDSTKEARYALNNDSVLVNGDAISDEQRPIGMFDILAFPERGEFFRVFPDEGGRLALTSVDEEAAGSRLGKITNKSVVPGGDAQLTLHDGTNVLVDADTEYDTKDSIVVDNESKDVVAHFEYEEGALVTAVAGQHAGRIGEVADIDVTLGSGSN 203          
The following BLAST results are available for this feature:
BLAST of EY660550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_HALSA9.716e-1927.8330S ribosomal protein S4e OS=Halobacterium salinar... [more]
RS4E_HALS39.716e-1927.8330S ribosomal protein S4e OS=Halobacterium salinar... [more]
RS4E_HALLT1.657e-1827.9430S ribosomal protein S4e OS=Halorubrum lacusprofu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-023-D08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660550 ID=EY660550; Name=EY660550; organism=Citrus sinensis; type=EST; length=899bp
GGTCCGGATTCCCCGGTCGACCACGCGTCCGAGAGAACAGACAAGCAGCC
GCAGCGAGGCAGCAGCTTCAAACTCACAAAAATGGCTAGAGGATTGAAGA
AGCACTTGAAGAGGCTCAATGCCCCTAAGCACTGGATGCTTGACAAGCTT
GGTGGTGCATTTGCACCTAAGCCATCATCTGGTCCCCACAAGTCAAGGGA
ATGCTTGCCATTGATCCTTGTATTGCGAAACCGTTTGAAATATGCTCTCA
CATATCGTGAAGTTATTGCTATTCTGATGCAACGACATGTTCTTGTTGAT
GGGAAGGTTAGGACAGATAAGACCTACCCTGCTGGTTTCATGGATGTTGT
GTCAATTCCCAAGACCAACGAGAACTTCCGTCTCCTTTATGACACCAAGG
GTCGCTTCCGTCTCCATTCCCTCAGAGATGAGGAGGCAAAATTCAAGCTT
TGCAAAGTTAGATCAGTCCAGTTTGGCCAGAAAGGTATCCCATACATCAA
CACCTATGATGGGCGTACCATCCGCTACCCTGACCCACTCATCAAAGCCA
ATGATACCATCAAACTTGACTTAGAAGAGAACAAGATCACTGACTTCATC
AAGTTTGATGTTGGGAATATTGTCATGGTCACTGGGGGTAGAAACAGAGG
TCGGGTTGGAATCATCAAGAACAGGGAAAAGCATAAGGGAAGTTTTGAGA
ACATCCATATTCAAGATGCCCTTGGTCATGAGGTTGCAACTCGTCTAGGC
AATGNTGTCACCATCGGGGAAGGTTCAAAACCATGGGTGTCACTTCCTAA
AAGGCAGGGTATTAAGTTGTCCATCCTTGAGGGAACTAAGAAGAGAAGGC
TGCCCAGGCTGCTGCTTAAGCTTTACAATGATTTGGATACATTTGCTGC
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