EY660540

Overview
NameEY660540
Unique NameEY660540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660540 vs. ExPASy Swiss-Prot
Match: MAD21_ORYSJ (MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.123e-21
Identity = 59/160 (36.88%), Postives = 89/160 (55.62%), Query Frame = 3
Query:   57 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRIAEEAVASGAPKAEDPQAGY-----SSLHVHDELLKIVQRQLEGPNFEQFTATXXXXXXXXXXXXXXXIRAVKTQLMMGSIRTLQAK 521
            MGR K++++RIENK+  QVTF KRR+GL+KKA EL++LCD ++AL++FSSRGRLYEF + +S  S +ERY+   A  + +  AP  +     Y     + +    + L+   R L G +    TA                IR+ K +L+   I  +Q +
Sbjct:    1 MGRGKIEIKRIENKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEFSNVNSTRSTIERYKK--ASASTSGSAPVIDVNSHQYFQQEAAKMRHQIQTLQNANRHLIGESIGNMTAKELKSLENRLEKGISRIRSKKHELLFSEIEYMQKR 158          
BLAST of EY660540 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSJ (MADS-box transcription factor 26 OS=Oryza sativa subsp. japonica GN=MADS26 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.303e-21
Identity = 60/167 (35.93%), Postives = 93/167 (55.69%), Query Frame = 3
Query:   57 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRIAEEAVASGAPKAEDPQAGYSSLHVHDELLKIVQRQLEGPNF-EQFTATXXXXXXXXXXXXXXXIRAVKTQLMMGSIRTLQAKVHLINTFHTLL 554
            M R K+QL+RIEN    QVTF KRR+GL+KKARELS+LC+ D+ ++IFS+ G+LY+  +  ++  ++ERY+S   E+A A G  +  DP+     L     LL+   R + G    E  T                 IR+ K Q+M+  I+ L++K  ++   + +L
Sbjct:    1 MARGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYKSASGEQANACGDQRM-DPKQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKEGMLKAANEIL 166          
BLAST of EY660540 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSI (MADS-box transcription factor 26 OS=Oryza sativa subsp. indica GN=MADS26 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 9.303e-21
Identity = 60/167 (35.93%), Postives = 93/167 (55.69%), Query Frame = 3
Query:   57 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRIAEEAVASGAPKAEDPQAGYSSLHVHDELLKIVQRQLEGPNF-EQFTATXXXXXXXXXXXXXXXIRAVKTQLMMGSIRTLQAKVHLINTFHTLL 554
            M R K+QL+RIEN    QVTF KRR+GL+KKARELS+LC+ D+ ++IFS+ G+LY+  +  ++  ++ERY+S   E+A A G  +  DP+     L     LL+   R + G    E  T                 IR+ K Q+M+  I+ L++K  ++   + +L
Sbjct:    1 MARGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYKSASGEQANACGDQRM-DPKQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKEGMLKAANEIL 166          
BLAST of EY660540 vs. ExPASy Swiss-Prot
Match: AGL8_SOLLC (Agamous-like MADS-box protein AGL8 homolog OS=Solanum lycopersicum GN=TDR4 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.072e-20
Identity = 60/157 (38.22%), Postives = 87/157 (55.41%), Query Frame = 3
Query:   57 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQ--SRIAEEAVASGAPKAEDPQAGYSSLHVHDELLKIVQRQLEGPNFEQFTATXXXXXXXXXXXXXXXIRAVKTQLMMGSIRTLQAK 521
            MGR ++QL+RIENK   QVTFSKRRSGL+KKA E+SVLCD ++ L++FS++G+L+E+ +   +  ILERY+  S   ++ V +           +  L    E+L+  Q+   G + E  +                 IR+ K QLM  SI  LQ K
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERILERYERYSFAEKQLVPTDHTSPVSWTLEHRKLKARLEVLQRNQKHYVGEDLESLSMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKK 157          
BLAST of EY660540 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.707e-20
Identity = 63/158 (39.87%), Postives = 87/158 (55.06%), Query Frame = 3
Query:   57 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQS--RIAEEAVASGAPKAE-DPQAGYSSLHVHDELLKIVQRQLEGPNFEQFTATXXXXXXXXXXXXXXXIRAVKTQLMMGSIRTLQAK 521
            MGR K++L+RIENK   QVTF+KRR+GL+KKA ELSVLCD ++AL+IFS+RGRL+EF ++  +   LERY+S         AS A + E      Y  L    E L+  QR L G +    +                 IR+ K Q ++  +  L+ K
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRK 158          
BLAST of EY660540 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.707e-20
Identity = 63/158 (39.87%), Postives = 87/158 (55.06%), Query Frame = 3
Query:   57 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQS--RIAEEAVASGAPKAE-DPQAGYSSLHVHDELLKIVQRQLEGPNFEQFTATXXXXXXXXXXXXXXXIRAVKTQLMMGSIRTLQAK 521
            MGR K++L+RIENK   QVTF+KRR+GL+KKA ELSVLCD ++AL+IFS+RGRL+EF ++  +   LERY+S         AS A + E      Y  L    E L+  QR L G +    +                 IR+ K Q ++  +  L+ K
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRK 158          
BLAST of EY660540 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.707e-20
Identity = 65/158 (41.14%), Postives = 88/158 (55.70%), Query Frame = 3
Query:   57 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRIAEEAVASGAPKAEDPQAGY---SSLHVHDELLKIVQRQLEGPNFEQFTATXXXXXXXXXXXXXXXIRAVKTQLMMGSIRTLQAK 521
            MGR +++L+RIENK   QVTFSKRR+GL+KKA ELSVLCD ++AL+IFSSRG+LYEF SA  +   LE+Y S       ++ A    + Q+ Y   S L    E L+  QR + G +    +                  R  KTQ+MM  +  L+ K
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA-GINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRK 157          
BLAST of EY660540 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSJ (MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.617e-20
Identity = 62/159 (38.99%), Postives = 88/159 (55.35%), Query Frame = 3
Query:   57 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQS----RIAEEAVASGAPKAEDPQAGYSSLHVHDELLKIVQRQLEGPNFEQFTATXXXXXXXXXXXXXXXIRAVKTQLMMGSIRTLQAK 521
            M R + +L+RIEN +  QVTFSKRR+GL+KKA ELSVLCD ++AL++FS RGRLYEF SA SL   ++RY++     +  + +     + +D   G   L    E L   +R++ G N E F+                 IR  KT+L+   I  L+ K
Sbjct:    1 MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLG---LAKKLEALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEK 156          
BLAST of EY660540 vs. ExPASy Swiss-Prot
Match: AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.617e-20
Identity = 66/158 (41.77%), Postives = 92/158 (58.23%), Query Frame = 3
Query:   57 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRIAEEAVASGAPKAEDPQAG---YSSLHVHDELLKIVQRQLEGPNFEQFTATXXXXXXXXXXXXXXXIRAVKTQLMMGSIRTLQAK 521
            M R K +++RIEN +  QVTFSKRR+GL+KKA ELSVLCD ++ALVIFS R +LYEF S+ S+A+ +ERYQ RI E  + +   + ++ Q      S L    E L+I +R+L G   +  +                 IRA K QL+   I  L+A+
Sbjct:    1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEF-SSSSIAATIERYQRRIKE--IGNNHKRNDNSQQARDETSGLTKKIEQLEISKRKLLGEGIDACSIEELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAE 155          
BLAST of EY660540 vs. ExPASy Swiss-Prot
Match: MAD33_ORYSJ (MADS-box transcription factor 33 OS=Oryza sativa subsp. japonica GN=MADS33 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 7.875e-20
Identity = 60/167 (35.93%), Postives = 91/167 (54.49%), Query Frame = 3
Query:   57 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRIAEEAVASGA-PKAEDPQAGYSSLHVHDELLKIVQRQLEGPNFEQFTATXXXXXXXXXXXXXXXIRAVKTQLMMGSIRTLQAKVHLINTFHTLL 554
            M R K+Q++RIEN    QVTF KRR GL+KKARELSVLCD D+ ++IFSS+G+L+E  +  ++ +++ERYQS +A   +  GA  + +  + G   L    +LL+   R   G    + T                 IR  K Q+M   I+ L+ K  ++   + +L
Sbjct:    1 MVRGKVQMRRIENPVHRQVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQGKLHELATNGNMHNLVERYQSNVAGGQMEPGALQRQQVAEQGIFLLREEIDLLQRGLRSTYGGGAGEMTLDKLHALEKGLELWIYQIRTTKMQMMQQEIQFLRNKEGILKEANEML 167          
The following BLAST results are available for this feature:
BLAST of EY660540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
MAD21_ORYSJ7.123e-2136.88MADS-box transcription factor 21 OS=Oryza sativa s... [more]
MAD26_ORYSJ9.303e-2135.93MADS-box transcription factor 26 OS=Oryza sativa s... [more]
MAD26_ORYSI9.303e-2135.93MADS-box transcription factor 26 OS=Oryza sativa s... [more]
AGL8_SOLLC2.072e-2038.22Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
MADS5_ORYSJ2.707e-2039.87MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS5_ORYSI2.707e-2039.87MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MAD17_ORYSJ2.707e-2041.14MADS-box transcription factor 17 OS=Oryza sativa s... [more]
MAD56_ORYSJ4.617e-2038.99MADS-box transcription factor 56 OS=Oryza sativa s... [more]
AGL19_ARATH4.617e-2041.77Agamous-like MADS-box protein AGL19 OS=Arabidopsis... [more]
MAD33_ORYSJ7.875e-2035.93MADS-box transcription factor 33 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-023-C09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660540 ID=EY660540; Name=EY660540; organism=Citrus sinensis; type=EST; length=843bp
ACTCTATCTGCTCTGCTGTGCTCCTTTTCTCATCTAGGGCGGCATTGGGT
CAGAAAATGGGCCGGAAAAAGCTTCAACTACAGCGAATTGAAAACAAAAG
CCGATGTCAAGTAACGTTCTCAAAGCGGCGTAGCGGATTGATCAAGAAGG
CTCGTGAGCTCTCCGTCCTCTGCGACGTCGACTTGGCGCTCGTCATCTTC
TCCAGCCGCGGTAGGCTTTACGAGTTCTGTAGCGCCGACAGTTTGGCCAG
CATCCTTGAGCGCTACCAGAGTCGCATTGCAGAGGAAGCTGTAGCTTCAG
GAGCACCTAAGGCAGAGGACCCTCAGGCTGGATATTCGAGCCTGCATGTG
CATGATGAACTGCTGAAAATAGTTCAAAGGCAACTTGAAGGTCCAAACTT
TGAGCAGTTCACTGCAACTGATCTTCTGCAGTTAGAGAATCTACTCAACG
ATACACTGACAGAAATTAGAGCTGTGAAGACACAACTGATGATGGGATCC
ATTAGAACACTCCAAGCGAAGGTACACTTAATTAATACTTTCCATACCTT
ACTCTGTGGAATTGTTTATTCCAGGTAAATCTTGAANGAAAACCTAAGCT
CCTAGCTGGGTGCAAATTGCAGTGTCCACTTTTATGTGGTTAAAATGACT
GCAAATATTTCTGTTTCACTACGACAGGGGTTGTTTACATTAAATATCAT
GGGTTCCATTTAGTTGGGGGAAATTTTTTCTCCTATTCATAAAAAGAGGA
TCTTATTGCAAGGAAACTGGACAGCTGGCTGGGTCAACAGTAGGCTTTCA
AATCTCCCAGGNTCATTGGTTGCCATTGCATAAAGTTTATCAA
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