EY660540

Overview
NameEY660540
Unique NameEY660540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660540 vs. ExPASy Swiss-Prot
Match: MAD25_ORYSJ (MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica GN=MADS25 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 7.875e-20
Identity = 63/160 (39.38%), Postives = 86/160 (53.75%), Query Frame = 3
Query:   57 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRIAEEA-VASGAPKAEDPQAGYSSLHVHDELLKIVQRQLEGPNFEQFTATXXXXXXXXXXXXXXXIRAVKTQLMMGSIRTLQAKVHLI 533
            MGR K+ ++RI+N    QVTFSKRR GL+KKAREL++LCD D+ L++FS  GRLY+F S+ S+ SI+ERYQ    E   + +   +A+  Q   ++L    + L    RQL G     FT                 IR  K QL+   I  L  K  L+
Sbjct:    1 MGRGKIAIKRIDNTMNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDF-SSSSMKSIIERYQEAGEEHCRLLNPMSEAKFWQREVTTLRQQVQNLHHNNRQLLGEEISNFTVRDLQLLQNQVEMSLHSIRNKKDQLLAEEILKLNEKGSLV 159          
BLAST of EY660540 vs. ExPASy Swiss-Prot
Match: AGL8_SOLTU (Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.029e-19
Identity = 58/155 (37.42%), Postives = 85/155 (54.84%), Query Frame = 3
Query:   57 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQ--SRIAEEAVASGAPKAEDPQAGYSSLHVHDELLKIVQRQLEGPNFEQFTATXXXXXXXXXXXXXXXIRAVKTQLMMGSIRTLQ 515
            MGR ++QL+RIENK   QVTFSKRRSGL+KKA E+SVLCD ++ L++FS++G+L+E+ +   +  +LERY+  S    + V +           ++ L    E+L+  Q+   G + E                    IR+ K QLM  SI  LQ
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERLLERYERYSFAERQLVPTDHTSPGSWTLEHAKLKARLEVLQRNQKHYVGEDLESLNMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQ 155          
BLAST of EY660540 vs. ExPASy Swiss-Prot
Match: AGL21_ARATH (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.754e-19
Identity = 59/161 (36.65%), Postives = 93/161 (57.76%), Query Frame = 3
Query:   57 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERY-QSRIAEEAVASGAPKAEDPQAGYSSLHVHDELLKIVQRQLEGPNFEQFTATXXXXXXXXXXXXXXXIRAVKTQLMMGSIRTLQAKVHLIN 536
            MGR K+ +QRI++ +  QVTFSKRR GLIKKA+EL++LCD ++ L+IFSS G+LY+F S+ S+ S+++RY +S+I ++ + + A + +  Q   + L      L+   RQ+ G      +                 IR  K QL+   I+ L  K +LI+
Sbjct:    1 MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASS-SMKSVIDRYNKSKIEQQQLLNPASEVKFWQREAAVLRQELHALQENHRQMMGEQLNGLSVNELNSLENQIEISLRGIRMRKEQLLTQEIQELSQKRNLIH 160          
BLAST of EY660540 vs. ExPASy Swiss-Prot
Match: MAD20_ORYSJ (MADS-box transcription factor 20 OS=Oryza sativa subsp. japonica GN=MADS20 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.291e-19
Identity = 63/174 (36.21%), Postives = 95/174 (54.60%), Query Frame = 3
Query:   57 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSA-DSLASILERYQSRIAEEAVASGAPKAED-PQAGYSSLHVHDEL------LKIVQRQLEGPNFEQFTATXXXXXXXXXXXXXXXIRAVKTQLMMGSIRTLQAKVHLINTFHTLL 554
            MGR K+Q++RIEN+   QVTFSKRR GL+KKA E++VLCDVD+A ++FS++G L+ + S+  ++  ILE+Y      E ++ G    E+ P+   S  + H +L      LK  QR L G   +  T                 IR+ K +L+M     L+ K+  + T HT +
Sbjct:    1 MGRGKVQVRRIENEVSRQVTFSKRRPGLLKKAHEIAVLCDVDVAAIVFSAKGNLFHYASSHTTMERILEKYD---RHELLSEGNNVIEEFPELEGSMSYDHIKLRGRIEALKKSQRNLMGQELDSLTLQDIQQLENQIDTSLNNIRSRKEKLLMEKNTILEKKITELETLHTCI 171          
BLAST of EY660540 vs. ExPASy Swiss-Prot
Match: AG_BRANA (Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.291e-19
Identity = 56/159 (35.22%), Postives = 87/159 (54.72%), Query Frame = 3
Query:   51 QKMGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRIAEEAVASGAPKAEDPQAGYSSLHVHDELLKI--VQRQLEGPNFEQFTATXXXXXXXXXXXXXXXIRAVKTQLMMGSIRTLQAK 521
            +K GR K++++RIEN +  QVTF KRR+GL+KKA ELSVLCD ++AL++FSSRGRLYE+ S +S+   +ERY+  I++ +      +         S  +  +++ I    RQL G      +                 IR+ K +L+   I  +Q +
Sbjct:   15 RKAGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-SNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLDRSVNRIRSKKNELLFAEIDYMQKR 172          
BLAST of EY660540 vs. ExPASy Swiss-Prot
Match: AG_ARATH (Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.291e-19
Identity = 56/159 (35.22%), Postives = 87/159 (54.72%), Query Frame = 3
Query:   51 QKMGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRIAEEAVASGAPKAEDPQAGYSSLHVHDELLKI--VQRQLEGPNFEQFTATXXXXXXXXXXXXXXXIRAVKTQLMMGSIRTLQAK 521
            +K GR K++++RIEN +  QVTF KRR+GL+KKA ELSVLCD ++AL++FSSRGRLYE+ S +S+   +ERY+  I++ +      +         S  +  +++ I    RQL G      +                 IR+ K +L+   I  +Q +
Sbjct:   15 RKSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-SNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLERSITRIRSKKNELLFSEIDYMQKR 172          
BLAST of EY660540 vs. ExPASy Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.993e-19
Identity = 62/158 (39.24%), Postives = 87/158 (55.06%), Query Frame = 3
Query:   57 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRIAEEAVASGAPKAEDPQAGYS---SLHVHDELLKIVQRQLEGPNFEQFTATXXXXXXXXXXXXXXXIRAVKTQLMMGSIRTLQAK 521
            M R K +++RIEN +  QVTFSKRR+GL+KKA ELSVLCD ++AL+IFS RG+LYEF S+ S+   +ERYQ RI +  + S   + ++ Q        L    E L+I  R++ G   +  +                 IRA K QL+      L+ K
Sbjct:    1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSSIPKTVERYQKRIQD--LGSNHKRNDNSQQSKDETYGLARKIEHLEISTRKMMGEGLDASSIEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEK 156          
BLAST of EY660540 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSI (MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.909e-19
Identity = 61/159 (38.36%), Postives = 87/159 (54.72%), Query Frame = 3
Query:   57 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQS----RIAEEAVASGAPKAEDPQAGYSSLHVHDELLKIVQRQLEGPNFEQFTATXXXXXXXXXXXXXXXIRAVKTQLMMGSIRTLQAK 521
            M R + +L+RIEN +  QVTFSKRR+GL+KKA ELSVLCD ++AL++FS RGRLYEF SA SL   ++RY++     +  + +     + +D   G   L    E L   +R++ G N E  +                 IR  KT+L+   I  L+ K
Sbjct:    1 MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLG---LAKKLEALDESRRKILGENLEGCSIEELRGLEMKLEKSLHNIRLKKTELLERQIAKLKEK 156          
BLAST of EY660540 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.909e-19
Identity = 61/157 (38.85%), Postives = 87/157 (55.41%), Query Frame = 3
Query:   57 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERY-QSRIAEEAVASGAPKAEDPQAGYSSLHVHDELLKIVQRQLEGPNFEQFTATXXXXXXXXXXXXXXXIRAVKTQLMMGSIRTLQAKV 524
            MGR K++++RI+N +  QVTFSKRRSGL KKARELS+LCD ++ L++FSS  RLY+F S+ S+ SI+ERY +++       + + +A+  Q   +SL      L+   RQL G                        IR  K  +MM  I+ L  KV
Sbjct:    1 MGRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASS-SMKSIIERYNETKEDPHQTMNASSEAKLWQQEAASLRQQLHNLQEYHRQLLGQQLSGLDVEDLQNLESKLEMSLKNIRLRKDNVMMDQIQELSRKV 156          
BLAST of EY660540 vs. ExPASy Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.909e-19
Identity = 55/159 (34.59%), Postives = 87/159 (54.72%), Query Frame = 3
Query:   51 QKMGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRIAEEAVASGAPKAEDPQAGYSSLHVHDELLKIVQ--RQLEGPNFEQFTATXXXXXXXXXXXXXXXIRAVKTQLMMGSIRTLQAK 521
            +K+GR K++++RIEN +  QVTF KRR+GL+KKA ELSVLCD ++AL++FS+RGRLYE+ + +S+   +ERY+    +    S   +A        +  +  E+  I +  R + G +    T                 IR+ K +L+   I  +Q K
Sbjct:   15 RKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYAN-NSVKGTIERYKKACTDSPNTSSVSEANAQFYQQEASKLRQEISSIQKNNRNMMGESLGSLTVRDLKGLETKLEKGISRIRSKKNELLFAEIEYMQKK 172          
The following BLAST results are available for this feature:
BLAST of EY660540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
MAD25_ORYSJ7.875e-2039.38MADS-box transcription factor 25 OS=Oryza sativa s... [more]
AGL8_SOLTU1.029e-1937.42Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL21_ARATH1.754e-1936.65Agamous-like MADS-box protein AGL21 OS=Arabidopsis... [more]
MAD20_ORYSJ2.291e-1936.21MADS-box transcription factor 20 OS=Oryza sativa s... [more]
AG_BRANA2.291e-1935.22Floral homeotic protein AGAMOUS OS=Brassica napus ... [more]
AG_ARATH2.291e-1935.22Floral homeotic protein AGAMOUS OS=Arabidopsis tha... [more]
AGL14_ARATH2.993e-1939.24Agamous-like MADS-box protein AGL14 OS=Arabidopsis... [more]
MAD56_ORYSI3.909e-1938.36MADS-box transcription factor 56 OS=Oryza sativa s... [more]
MAD23_ORYSJ3.909e-1938.85MADS-box transcription factor 23 OS=Oryza sativa s... [more]
AG_PANGI3.909e-1934.59Floral homeotic protein AGAMOUS OS=Panax ginseng G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-023-C09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660540 ID=EY660540; Name=EY660540; organism=Citrus sinensis; type=EST; length=843bp
ACTCTATCTGCTCTGCTGTGCTCCTTTTCTCATCTAGGGCGGCATTGGGT
CAGAAAATGGGCCGGAAAAAGCTTCAACTACAGCGAATTGAAAACAAAAG
CCGATGTCAAGTAACGTTCTCAAAGCGGCGTAGCGGATTGATCAAGAAGG
CTCGTGAGCTCTCCGTCCTCTGCGACGTCGACTTGGCGCTCGTCATCTTC
TCCAGCCGCGGTAGGCTTTACGAGTTCTGTAGCGCCGACAGTTTGGCCAG
CATCCTTGAGCGCTACCAGAGTCGCATTGCAGAGGAAGCTGTAGCTTCAG
GAGCACCTAAGGCAGAGGACCCTCAGGCTGGATATTCGAGCCTGCATGTG
CATGATGAACTGCTGAAAATAGTTCAAAGGCAACTTGAAGGTCCAAACTT
TGAGCAGTTCACTGCAACTGATCTTCTGCAGTTAGAGAATCTACTCAACG
ATACACTGACAGAAATTAGAGCTGTGAAGACACAACTGATGATGGGATCC
ATTAGAACACTCCAAGCGAAGGTACACTTAATTAATACTTTCCATACCTT
ACTCTGTGGAATTGTTTATTCCAGGTAAATCTTGAANGAAAACCTAAGCT
CCTAGCTGGGTGCAAATTGCAGTGTCCACTTTTATGTGGTTAAAATGACT
GCAAATATTTCTGTTTCACTACGACAGGGGTTGTTTACATTAAATATCAT
GGGTTCCATTTAGTTGGGGGAAATTTTTTCTCCTATTCATAAAAAGAGGA
TCTTATTGCAAGGAAACTGGACAGCTGGCTGGGTCAACAGTAGGCTTTCA
AATCTCCCAGGNTCATTGGTTGCCATTGCATAAAGTTTATCAA
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