EY660510

Overview
NameEY660510
Unique NameEY660510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660510 vs. ExPASy Swiss-Prot
Match: GALE_NEIMC (UDP-glucose 4-epimerase OS=Neisseria meningitidis serogroup C GN=galE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.019e-12
Identity = 49/160 (30.63%), Postives = 79/160 (49.38%), Query Frame = 1
Query:   91 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQGGVRYAMQNPQSYVASNIAGFVNLLEVCQSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKIAGEEI 570
            +LVTG  GF+GSH  ++L K G  V+ LDN  +     L R   K +   ++   +GD+ D  +L ++F       V+H A    V  ++  P  Y  +N++G + L E          IV++SS++VYG   +VP++E  +     S Y  +K   E I
Sbjct:    4 ILVTGGTGFIGSHTVVSLLKSGHQVVILDNLCNSSINILPRL--KTITGQEIPFYQGDIRDREILRRIFAENRIDSVIHFAGLKAVGESVAEPMKYYDNNVSGSLVLAEEMARAGVF-KIVFSSSATVYGDPGKVPYTEDMQPGDTTSPYGTSKSMVERI 160          
BLAST of EY660510 vs. ExPASy Swiss-Prot
Match: GALE_LACCA (UDP-glucose 4-epimerase OS=Lactobacillus casei GN=galE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.019e-12
Identity = 52/173 (30.06%), Postives = 85/173 (49.13%), Query Frame = 1
Query:   85 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLK-RARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQGGVRYAMQNPQSYVASNIAGFVNLLEVCQSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKIAGEEIPTLTTIFTGL 600
            MT+ V G AG++GSH    L   G+ V+ LDN  + +  ++  RAR            +GD+ D   L+++F       ++H AA   V  +M++P  Y  +N  G + LLE       +  IV++S+++ YG   QVP  E+     P + Y  +K+A E+I     +  GL
Sbjct:    1 MTIAVLGGAGYIGSHTVKQLLAAGEDVVVLDNLITGHRKAVDPRAR----------FYQGDIRDYHFLSQVFSQEKIDGIVHFAAFSIVPESMKDPLKYFDNNTGGMITLLEAMNQFGIK-KIVFSSTAATYGEPKQVPIKETD-PQVPTNPYGESKLAMEKIMHWADVAYGL 161          
BLAST of EY660510 vs. ExPASy Swiss-Prot
Match: GALE_CORDI (UDP-glucose 4-epimerase OS=Corynebacterium diphtheriae GN=galE PE=3 SV=2)

HSP 1 Score: 65.0846 bits (157), Expect = 4.181e-12
Identity = 51/158 (32.28%), Postives = 80/158 (50.63%), Query Frame = 1
Query:   85 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQGGVRYAMQNPQSYVASNIAGFVNLLEVCQSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKIA 558
            M +LVTG AG+VGS CS  L ++G  V  +DN        L    +  +     F VEGD+ D  +   +     F  VLH AA+  V  +++ P  Y   N+   + LL+  +  N + +IV++S+++ YG    VP +E   T  P + Y ATK++
Sbjct:    1 MKLLVTGGAGYVGSVCSTVLLEQGHEVTIVDN--------LTTGNRDAVPLGATF-VEGDIKD--VADNVLSSDSFDAVLHFAARSLVGESVEKPDEYWQHNMVTTLALLDAMKRNNVR-NIVFSSTAATYGEPETVPITEDAPT-HPTNPYGATKLS 145          

HSP 2 Score: 27.335 bits (59), Expect = 4.181e-12
Identity = 11/23 (47.83%), Postives = 14/23 (60.87%), Query Frame = 3
Query:  576 TYHHIYGLARTGLRFFTVSAPGG 644
            +Y H YG A T LR+F V+   G
Sbjct:  152 SYAHAYGFAATSLRYFNVAGAYG 174          
BLAST of EY660510 vs. ExPASy Swiss-Prot
Match: GALE_DROME (Probable UDP-glucose 4-epimerase OS=Drosophila melanogaster GN=CG12030 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.169e-11
Identity = 52/165 (31.52%), Postives = 77/165 (46.67%), Query Frame = 1
Query:   88 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLK----RARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQGGVRYAMQNPQSYVASNIAGFVNLLEVCQSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKIAGEEI 570
            TVLVTG AG++GSH  L +   G  V+ +DN  + Y    K     +R + +   +V     D+ D   +  +F       V H AA   V  + + P  Y  +N+ G  N+L    + N     V++SS++VYG    +P +E H T    S Y  TK   EEI
Sbjct:    5 TVLVTGGAGYIGSHTVLEMLNAGYNVICVDNLCNAYSSGAKLPEALSRVQEITGKKVNFYRVDITDREQVRSVFQEHKIDMVAHFAALKAVGESCRIPLQYYHNNMTG-TNVLLEAMADNNVFKFVYSSSATVYGEPKFLPVTEEHPTGNCTSPYGKTKYFTEEI 168          
BLAST of EY660510 vs. ExPASy Swiss-Prot
Match: EXOB_RHILT (UDP-glucose 4-epimerase OS=Rhizobium leguminosarum bv. trifolii GN=exoB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.169e-11
Identity = 49/162 (30.25%), Postives = 80/162 (49.38%), Query Frame = 1
Query:   82 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQGGVRYAMQNPQSYVASNIAGFVNLLEVCQSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKIAGEE 567
            G TVLV G AG++GSH  L L  +G   +  DNF++ +   ++    +          EGD+ D   L ++        +LH AA   V  ++++P S+  +N+ G + LL   Q+     + V++S+ + YGL   VP  E+HR   P + Y  TK   E+
Sbjct:    3 GETVLVVGGAGYIGSHTCLDLANKGYRPVVFDNFSNGHREFVRWGPAE----------EGDIRDRARLDEVLAKHKPAAILHFAALIEVGESVKDPVSFYENNVIGTLTLLSAAQAAGIN-AFVFSSTCATYGLPQSVPLDETHR-QVPINPYGRTKYIVEQ 152          
BLAST of EY660510 vs. ExPASy Swiss-Prot
Match: GALE_RAT (UDP-glucose 4-epimerase OS=Rattus norvegicus GN=Gale PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.402e-11
Identity = 47/136 (34.56%), Postives = 73/136 (53.68%), Query Frame = 1
Query:   91 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY------DPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQGGVRYAMQNPQSYVASNIAGFVNLLEVCQSVNPQPSIVWASSSSVYG 480
            VLVTG AG++GSH  L L + G   + +DNF++          SL+R ++  L    V   E D+ D   L  LF    F  V+H A    V  ++Q P  Y   N+ G + LLE+ +++  + S+V++SS++VYG
Sbjct:    5 VLVTGGAGYIGSHTVLELLEAGYSPVVIDNFHNSIRGEDSMPESLRRVQE--LTGRSVEFEEMDILDQAALQHLFKKHNFKAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMRAMGVK-SLVFSSSATVYG 137          
BLAST of EY660510 vs. ExPASy Swiss-Prot
Match: GAL10_CANMA (Bifunctional protein GAL10 (Fragment) OS=Candida maltosa GN=GAL10 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.443e-11
Identity = 44/130 (33.85%), Postives = 75/130 (57.69%), Query Frame = 1
Query:   94 LVTGAAGFVGSHCSLALKKRGDGVLGLDNF-NSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQGGVRYAMQNPQSYVASNIAGFVNLLEVCQSVNPQPSIVWASSSSVYG 480
            LVTG AG++GSH  + L   G  V+  DN  NS YD   +   + ++++H    ++ D+ +   L ++F     + V+H AA   V  + + P  Y  +N++G + LL VC+S N + +IV++SS++VYG
Sbjct:    7 LVTGGAGYIGSHTVIELINHGIKVVIADNLSNSSYDAVARI--EFIVKQHVSHFIKVDIRNEKELNQVFSNHKISGVIHFAALKAVGESTKIPLEYYDNNVSGTIALLNVCKSNNVK-TIVFSSSATVYG 133          
The following BLAST results are available for this feature:
BLAST of EY660510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
GALE_NEIMC4.019e-1230.63UDP-glucose 4-epimerase OS=Neisseria meningitidis ... [more]
GALE_LACCA4.019e-1230.06UDP-glucose 4-epimerase OS=Lactobacillus casei GN=... [more]
GALE_CORDI4.181e-1232.28UDP-glucose 4-epimerase OS=Corynebacterium diphthe... [more]
GALE_DROME1.169e-1131.52Probable UDP-glucose 4-epimerase OS=Drosophila mel... [more]
EXOB_RHILT1.169e-1130.25UDP-glucose 4-epimerase OS=Rhizobium leguminosarum... [more]
GALE_RAT3.402e-1134.56UDP-glucose 4-epimerase OS=Rattus norvegicus GN=Ga... [more]
GAL10_CANMA4.443e-1133.85Bifunctional protein GAL10 (Fragment) OS=Candida m... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-023-A03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660510 ID=EY660510; Name=EY660510; organism=Citrus sinensis; type=EST; length=908bp
GTCCGCTCCTCTTCCTTTTCCACTGGCGGGGCAGAGTGGGAGAAGCAGGT
CCGCCACTCTGCCACCCCTCGCCGCCCCAACGGGATGACCGTTTTGGTCA
CCGGAGCTGCCGGTTTCGTCGGATCTCACTGCTCCCTCGCTCTCAAAAAG
CGAGGCGATGGCGTTTTGGGGTTGGATAATTTCAACAGCTATTACGATCC
GTCGCTTAAACGGGCGAGGCAAAAGCTGCTTCAAAAGCATCAAGTCTTCA
TCGTCGAAGGGGACCTGAATGACGCTCCCCTGTTAACAAAGCTTTTCGAC
GTTGTACCTTTCACCCACGTACTGCACTTAGCAGCACAGGGCGGGGTTCG
CTACGCCATGCAGAATCCGCAATCTTACGTGGCATCCAACATCGCTGGAT
TCGTCAACCTGCTCGAAGTTTGCCAATCGGTGAACCCTCAGCCGTCGATC
GTGTGGGCCTCATCGAGCTCGGTGTACGGCCTCAACACGCAGGTCCCCTT
CTCCGAGTCGCACAGAACCGACCAGCCCGCGAGTTTGTACGCGGCGACTA
AGATAGCCGGGGAAGAAATCCCCACACTTACCACCATATTTACGGGCTTG
CCCGCACGGGCCTAAGGTTCTTCACGGTGTCGGCCCCTGGGGGAAACCGA
CATGCTTACTTCCTCTTCCCAAAGATATCTTACAGGGCAAACCCTTGATG
TGTACAAACGCAAGATACCAGGAAGTGGGGCGGGGCCTCCCATACTAGAT
GACCTAAGGAAGGTCTTGTCCGGGGCTTGAAACCCGGGGAAAAACCCGGG
AACCGTGGGAAAAATATGGGCCCGCCCCCCGAAATTTCCATCTCCTAACC
CCACCCTAGACCAGGAGGAATTGGGGCCGACTTGAAAATCGCGGACCCTA
CAGCCAAA
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