EY660502

Overview
NameEY660502
Unique NameEY660502
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660502 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.484e-13
Identity = 63/197 (31.98%), Postives = 81/197 (41.12%), Query Frame = 2
Query:  230 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFGA 763
            +P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++   Q++LMG VE                      R A        +  YPGG  FDPL LA          D E    LKV EIK+ RLAM +M  F+  A
Sbjct:   67 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG--------------------YRVAGGPLGEVVDPLYPGGS-FDPLGLA---------EDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 233          
BLAST of EY660502 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.484e-13
Identity = 77/264 (29.17%), Postives = 99/264 (37.50%), Query Frame = 2
Query:   41 MAAATSGAVLNGLGSSFINGGKKSQALLAGTNRVTXXXXXXXXXXLPPKKSWI--PAVKGGGNLIN--PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFGA 763
            MAAAT     +      +N    SQ  + G  + T          +     W     VK  G      P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++   Q++LMG VE                      R A        +  YPGG  FDPL LA          D E    LKV EIK+ RLAM +M  F+  A
Sbjct:    1 MAAATMAISSSSFAGKAVNVPSSSQ--ITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG--------------------YRVAGGPLGEVIDPLYPGGS-FDPLGLA---------DDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 232          
BLAST of EY660502 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.484e-13
Identity = 63/197 (31.98%), Postives = 81/197 (41.12%), Query Frame = 2
Query:  230 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFGA 763
            +P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++   Q++LMG VE                      R A        +  YPGG  FDPL LA          D E    LKV EIK+ RLAM +M  F+  A
Sbjct:   66 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG--------------------YRVAGGPLGEVVDPLYPGGS-FDPLGLA---------EDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 232          
BLAST of EY660502 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.484e-13
Identity = 62/196 (31.63%), Postives = 80/196 (40.82%), Query Frame = 2
Query:  233 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFGA 763
            P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++   Q++LMG VE  R                     A        +  YPGG F DPL LA          D E    LKV E+K+ RLAM +M  F+  A
Sbjct:   56 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR--------------------IAGGPLGEVTDPIYPGGSF-DPLGLAD---------DPEAFAELKVKELKNGRLAMFSMFGFFVQA 221          
BLAST of EY660502 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.244e-13
Identity = 63/196 (32.14%), Postives = 83/196 (42.35%), Query Frame = 2
Query:  233 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFGA 763
            P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G    +  A +G+      WF+AG+            +P  +   S  ++   Q++LMG +E  R                     A        +  YPGG F DPL LA          D E    LKV EIK+ RLAM +M  F+  A
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYR--------------------VAGGPLGEVTDPLYPGGSF-DPLGLAD---------DPEAFAELKVKEIKNGRLAMFSMFGFFVQA 233          
BLAST of EY660502 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.244e-13
Identity = 67/210 (31.90%), Postives = 90/210 (42.86%), Query Frame = 2
Query:  233 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFGAGQAKPTWGSWVENM 805
            P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  I   S  ++  +Q++LMG +E  R      P  + ++                  + YPGG F DPL LA          D E    LKV EIK+ RLAM +M  F+    QA  T    +EN+
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGG--GPLGEGLD------------------KIYPGGAF-DPLGLAD---------DPEAFAELKVKEIKNGRLAMFSMFGFFV---QAIVTGKGPIENL 242          
BLAST of EY660502 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.244e-13
Identity = 64/196 (32.65%), Postives = 82/196 (41.84%), Query Frame = 2
Query:  233 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFGA 763
            P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  I   S  ++   Q++LMG VE  R      P  + V                  +  YPGG  FDPL LA          D E    LKV E+K  RLAM++M  F+  A
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVV------------------DPLYPGGS-FDPLGLA---------DDPEAFGELKVKELKKGRLAMLSMFGFFVQA 231          
BLAST of EY660502 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.533e-13
Identity = 67/210 (31.90%), Postives = 88/210 (41.90%), Query Frame = 2
Query:  233 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGAD------------PGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFGAGQAKPTWGSWVENM 805
            P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G    +  A +G+      WF+AGA             P  I   S  ++   Q++LMG +E  R                     A        +  YPGG F DPL LA          D +    +KV EIK+ RLAM +M  F+    QA  T    +EN+
Sbjct:   79 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYR--------------------VAGGPLGEVTDPIYPGGNF-DPLGLAD---------DPDAFADVKVKEIKNGRLAMFSMFGFFV---QAIVTGKGPIENL 255          
BLAST of EY660502 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.533e-13
Identity = 67/210 (31.90%), Postives = 89/210 (42.38%), Query Frame = 2
Query:  233 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFGAGQAKPTWGSWVENM 805
            P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  I   S  ++   Q++LMG+VE  R      P  + ++                    YPGG F DPL LA          D +    LKV EIK+ RLAM +M  F+    QA  T    +EN+
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGG--GPLGEGLDPI------------------YPGGAF-DPLGLAD---------DPDAFAELKVKEIKNGRLAMFSMFGFFV---QAIVTGKGPIENL 242          
BLAST of EY660502 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.227e-13
Identity = 65/196 (33.16%), Postives = 82/196 (41.84%), Query Frame = 2
Query:  233 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFGA 763
            P +L G  P DYG+D  GL  DP      RE E+IH RWAM   +G    +  A +GI      WF+AGA            +P  +   S  ++   Q++LMG VE                      R A        +  YPGG  FDPL LA          D E    LKV EIK+ RLAM +M  F+  A
Sbjct:   68 PSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG--------------------YRVAGGPLGEVIDPLYPGGS-FDPLGLA---------EDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 233          
The following BLAST results are available for this feature:
BLAST of EY660502 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB24_TOBAC2.484e-1331.98Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB24_PETSP2.484e-1329.17Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB21_TOBAC2.484e-1331.98Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB21_CUCSA2.484e-1331.63Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB27_TOBAC3.244e-1332.14Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB23_TOBAC3.244e-1331.90Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB22_MAIZE3.244e-1332.65Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2A_PYRPY5.533e-1331.90Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_GOSHI5.533e-1331.90Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB23_PETSP7.227e-1333.16Chlorophyll a-b binding protein 22R, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-022-H07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660502 ID=EY660502; Name=EY660502; organism=Citrus sinensis; type=EST; length=849bp
CCCATTCTGCAGCTACAGAAGTCAAGTAGAGATCATATCTATGGCGGCTG
CAACATCCGGGGCTGTGTTAAACGGATTGGGTTCTTCATTCATAAATGGT
GGCAAGAAGAGCCAGGCTCTTTTGGCTGGCACGAATAGAGTGACAAGTTC
TAAAAAGTCAGTTGTTGTAGCTGCTCTTCCACCTAAAAAATCTTGGATTC
CTGCTGTTAAAGGTGGTGGCAACCTCATTAATCCCGAATGGCTCGATGGC
TCTCTCCCAGGTGACTACGGATTCGACCCACTTGGGCTTGGAAAGGACCC
AGCATTCCTGAAATGGTACAGAGAAGCAGAACTGATCCACGGACGATGGG
CAATGGCTGCAGTTGTTGGGATATTCGTCGGACAGGCGTGGAGTGGGATT
CCATGGTTCGAGGCTGGAGCAGATCCTGGAGCCATAGCACCCTTCTCCTT
CGGCTCACTCCTGGGAACCCAGCTTCTCCTTATGGGTTGGGTTGAGAGCA
AGCGGTGGGTTGATTTTTTCAATCCTGAATCTCAATCAGTTGAATGGGCA
ACACCTTGGTCAAGAACTGCTGAAAACTTTGCCAATGCGACTGGTGAACA
AGGCTACCCTGGTGGAAAGTTTTTTGATCCCTTATGTTTGGCTGGAACAA
TTAAGGATGGTGTCTACATTCCTGACACTGAGAAGCTTGACAGGCTCAAA
GTTGCTGAGATTAAACATGCTAGGCTTGCTATGGTGGCCATGTTGATTTT
CTACTTTGGAGCTGGGCAAGCAAAACCCACTTGGGGGTCTTGGGTTGAAA
ACATGCTTATGAAGATACTCACTGATTGTGGTAAAGGGAATCATCGGAT
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