EY660411

Overview
NameEY660411
Unique NameEY660411
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660411 vs. ExPASy Swiss-Prot
Match: RF1_THETN (Peptide chain release factor 1 OS=Thermoanaerobacter tengcongensis GN=prfA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.449e-14
Identity = 34/95 (35.79%), Postives = 63/95 (66.32%), Query Frame = 1
Query:  607 SEDKDMLDMATEELCLAIDEEKRXXXXXXXXXXPKDDADERDCILEVRAGTGREXASXVAVDVFKMYERYSQKEGWKVESVGVTESDLRGYRKLV 891
            S+D+++ +MA EEL    +++++          PKD  DE++ I+E+RAG G E A+  A D+F+MY  Y++K+GWKVE +   ++D+ G+++++
Sbjct:   67 SQDEELKEMAEEELSQLEEKKEKLMEEIKILLLPKDPNDEKNVIMEIRAGAGGEEAALFAYDLFRMYTMYAEKKGWKVEIMSANKTDIGGFKEVI 161          
BLAST of EY660411 vs. ExPASy Swiss-Prot
Match: RF1_METPB (Peptide chain release factor 1 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=prfA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.449e-14
Identity = 40/104 (38.46%), Postives = 64/104 (61.54%), Query Frame = 1
Query:  580 GLKSLIYECSEDKDMLDMATEELCLAIDEEKRXXXXXXXXXXPKDDADERDCILEVRAGTGREXASXVAVDVFKMYERYSQKEGWKVESVGVTESDLRGYRKLV 891
            G+++LI E   D +M  +A EE   A +  ++          PKD ADE+  ILE+RAGTG + A+  A D+F+MY +Y++ +GW+VE +  +E  + GYR++V
Sbjct:   62 GIRALIDEPGGDPEMRALAAEEKPEAEEALEQAHRALQLMLLPKDAADEKSAILEIRAGTGGDEAALFAGDLFRMYAKYAESKGWRVEVISESEGTVGGYREVV 165          
BLAST of EY660411 vs. ExPASy Swiss-Prot
Match: RF1_AGRVS (Peptide chain release factor 1 OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=prfA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.449e-14
Identity = 41/107 (38.32%), Postives = 64/107 (59.81%), Query Frame = 1
Query:  571 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRXXXXXXXXXXPKDDADERDCILEVRAGTGREXASXVAVDVFKMYERYSQKEGWKVESVGVTESDLRGYRKLV 891
            E+  LK+L+ + S D++M D+A  EL       +           PKD ADE+  ILE+RAGTG   A+  A D+F+MYER++  +GWKVE +  +E D  G+++++
Sbjct:   58 EVADLKALLADKSTDREMRDLAEMELPDVEARLEGLEKEIQIQLLPKDAADEKSAILEIRAGTGGSEAALFAGDLFRMYERFAAGKGWKVEVLSSSEGDAGGFKEII 164          
BLAST of EY660411 vs. ExPASy Swiss-Prot
Match: RF1_RHIME (Peptide chain release factor 1 OS=Rhizobium meliloti GN=prfA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.199e-14
Identity = 38/107 (35.51%), Postives = 64/107 (59.81%), Query Frame = 1
Query:  571 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRXXXXXXXXXXPKDDADERDCILEVRAGTGREXASXVAVDVFKMYERYSQKEGWKVESVGVTESDLRGYRKLV 891
            E+  + +++ + + DKDM D+A  E     ++ +           PKD ADE+  ILE+RAGTG   A+  A D+F+MYERY+  +GW+VE +  +E +  GY++++
Sbjct:   58 ELADIAAMLADRATDKDMRDLAEMEKPEVEEKIEALEQEIQILLLPKDAADEKSAILEIRAGTGGSEAALFAGDLFRMYERYAASKGWRVEVLSASEGEAGGYKEII 164          
BLAST of EY660411 vs. ExPASy Swiss-Prot
Match: RF1_METEP (Peptide chain release factor 1 OS=Methylobacterium extorquens (strain PA1) GN=prfA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.199e-14
Identity = 40/104 (38.46%), Postives = 63/104 (60.58%), Query Frame = 1
Query:  580 GLKSLIYECSEDKDMLDMATEELCLAIDEEKRXXXXXXXXXXPKDDADERDCILEVRAGTGREXASXVAVDVFKMYERYSQKEGWKVESVGVTESDLRGYRKLV 891
            G++++I E   D +M  +A EE   A +  ++          PKD ADE+  ILE+RAGTG + A+  A D+F+MY RY++ +GW+VE +  +E    GYR++V
Sbjct:   62 GIRAMIDEPGGDPEMRALAAEEKPEAEEALEQAHRALQLILLPKDAADEKSAILEIRAGTGGDEAALFAGDLFRMYARYAESKGWRVEVISESEGTAGGYREVV 165          
BLAST of EY660411 vs. ExPASy Swiss-Prot
Match: RF1_METC4 (Peptide chain release factor 1 OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=prfA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.199e-14
Identity = 40/104 (38.46%), Postives = 63/104 (60.58%), Query Frame = 1
Query:  580 GLKSLIYECSEDKDMLDMATEELCLAIDEEKRXXXXXXXXXXPKDDADERDCILEVRAGTGREXASXVAVDVFKMYERYSQKEGWKVESVGVTESDLRGYRKLV 891
            G++++I E   D +M  +A EE   A +  ++          PKD ADE+  ILE+RAGTG + A+  A D+F+MY RY++ +GW+VE +  +E    GYR++V
Sbjct:   62 GIRAMIDEPGGDPEMRALAAEEKPEAEEALEQAHRALQLILLPKDAADEKSAILEIRAGTGGDEAALFAGDLFRMYARYAESKGWRVEVISESEGTAGGYREVV 165          
BLAST of EY660411 vs. ExPASy Swiss-Prot
Match: RF1_ALTMD (Peptide chain release factor 1 OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=prfA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.199e-14
Identity = 38/94 (40.43%), Postives = 57/94 (60.64%), Query Frame = 1
Query:  610 EDKDMLDMATEELCLAIDEEKRXXXXXXXXXXPKDDADERDCILEVRAGTGREXASXVAVDVFKMYERYSQKEGWKVESVGVTESDLRGYRKLV 891
            +D +M +MA EE+  A  E +R          PKD  D+ +C LE+RAG G + A+  A D+F+MY RY++  GW+VE V   ES+  GY+++V
Sbjct:   72 DDAEMREMAQEEMKEAKGEIERLETELQVLLLPKDPNDDNNCFLEIRAGAGGDEAAIFAGDLFRMYSRYAESRGWRVELVNANESEHGGYKEVV 165          
BLAST of EY660411 vs. ExPASy Swiss-Prot
Match: RF1_LEGPC (Peptide chain release factor 1 OS=Legionella pneumophila (strain Corby) GN=prfA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.178e-14
Identity = 38/106 (35.85%), Postives = 63/106 (59.43%), Query Frame = 1
Query:  574 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRXXXXXXXXXXPKDDADERDCILEVRAGTGREXASXVAVDVFKMYERYSQKEGWKVESVGVTESDLRGYRKLV 891
            +D L  L+   S+DKD+  MA EE+ +   + +           PKD  DER+  LEVRAGTG + A+  A D+F+MY RY++ +GW++E +  +  +  GY++++
Sbjct:   62 LDSLNELLE--SDDKDLATMAEEEIDIVKKQIEELDEQLQWHLIPKDPDDERNIYLEVRAGTGGDEAAIFAGDLFRMYSRYAESQGWQIELISASHGEHGGYKEII 165          
BLAST of EY660411 vs. ExPASy Swiss-Prot
Match: RF1_GEOLS (Peptide chain release factor 1 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=prfA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.457e-14
Identity = 37/97 (38.14%), Postives = 59/97 (60.82%), Query Frame = 1
Query:  601 ECSEDKDMLDMATEELCLAIDEEKRXXXXXXXXXXPKDDADERDCILEVRAGTGREXASXVAVDVFKMYERYSQKEGWKVESVGVTESDLRGYRKLV 891
            E   D +M +MA EE+     E++R          PKD  D RD ILE+RAGTG + ++  + D+F+MY R+++K  WKVE +  +ES+  GY++++
Sbjct:   63 ELLADPEMKEMAEEEISRLSQEKERLDAEIKILLLPKDPNDSRDVILEIRAGTGGDESALFSGDLFRMYSRFAEKNRWKVEMLSCSESERGGYKEVI 159          
BLAST of EY660411 vs. ExPASy Swiss-Prot
Match: RF1_NITWN (Peptide chain release factor 1 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=prfA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.127e-14
Identity = 41/107 (38.32%), Postives = 61/107 (57.01%), Query Frame = 1
Query:  571 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRXXXXXXXXXXPKDDADERDCILEVRAGTGREXASXVAVDVFKMYERYSQKEGWKVESVGVTESDLRGYRKLV 891
            EI G+ ++I + + D +M  MA  E                    PKD  DER+ +LEVRAGTG + AS  A D+F+MYER++  +GWKVE +  +E  + GY+++V
Sbjct:   56 EIAGIDAMIADPATDAEMRAMAEAERPALEARNDELMQKIRVALLPKDAMDERNVMLEVRAGTGGDEASLFAGDLFRMYERFAALQGWKVEVISASEGTMGGYKEIV 162          
The following BLAST results are available for this feature:
BLAST of EY660411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
RF1_THETN2.449e-1435.79Peptide chain release factor 1 OS=Thermoanaerobact... [more]
RF1_METPB2.449e-1438.46Peptide chain release factor 1 OS=Methylobacterium... [more]
RF1_AGRVS2.449e-1438.32Peptide chain release factor 1 OS=Agrobacterium vi... [more]
RF1_RHIME3.199e-1435.51Peptide chain release factor 1 OS=Rhizobium melilo... [more]
RF1_METEP3.199e-1438.46Peptide chain release factor 1 OS=Methylobacterium... [more]
RF1_METC43.199e-1438.46Peptide chain release factor 1 OS=Methylobacterium... [more]
RF1_ALTMD3.199e-1440.43Peptide chain release factor 1 OS=Alteromonas macl... [more]
RF1_LEGPC4.178e-1435.85Peptide chain release factor 1 OS=Legionella pneum... [more]
RF1_GEOLS5.457e-1438.14Peptide chain release factor 1 OS=Geobacter lovley... [more]
RF1_NITWN7.127e-1438.32Peptide chain release factor 1 OS=Nitrobacter wino... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-H09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660411 ID=EY660411; Name=EY660411; organism=Citrus sinensis; type=EST; length=892bp
AAAATAAAGAATCGAGAAAAAGAAATGAGAAAAGTGAACTGGGCAATTGC
ATTACATCTAGGAGCGTTAAGGCAACTGGAATCTAGTTCTTCAATTTCAC
ATAGGAATCCTTTATTACATCAGAGATGGTTTGTCCAAAGAGCAGCCGCT
ACCCCTTCGCTCTCCAATTTTCGTTCTTATTCAACCGAAATGCTATCGAA
TGACCTTATAAAGATAATGGAGCAAAGGGTATTGGCTATTGAGCGGAGAA
GTGCTTGTCTTGAGAATCTGGTGAACCAGATAGCCAGAAGCCTCACCAGC
AGAGTATTCTAAGGCTAATAAAGAGCTGCGGAAACTCAGGGATTCCATGC
ACCTTATAAGTGAGTTGAGGACCAAACAAAAGGTGAACTACTTCTTGTGC
ATCTTTCTTGAGCTATTGGCTTTATATATATGGGGGAAAGATCGAAGAAA
ATACTGTTGCTGCTCTATGAAAATGATTAGGGAAGTATGATATGGCAGGC
GCTGTATTACTTTAGCTAATGTTTGGTTAATGAAGCTATTTGAGTCATCT
ATCTGGATTGTAATGTGTAGGAGATTGATGGGTTGAAATCCCTGATATAT
GAATGTTCTGAAGATAAAGACATGCTAGATATGGCTACTGAGGAATTGTG
CCTAGCAATTGATGAAGAGAAAAGATTGCAAAGTCTGCTTCTCAAGTCAT
TACTACCTAAGGACGATGCTGATGAAAGGGATTGCATTTTGGAAGTCAGA
GCTGGAACTGGNAGGGAAGANGCCTCTTTNGTTGCAGTAGACGTGTTTAA
GATGTATGAGAGATACTCACAGAAAGAGGGATGGAAAGTTGAAAGTGTCG
GTGTGACAGAGTCTGATCTCAGAGGATACAGGAAGCTAGTGC
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