EY660284

Overview
NameEY660284
Unique NameEY660284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660284 vs. ExPASy Swiss-Prot
Match: ARFK_ORYSI (Auxin response factor 11 OS=Oryza sativa subsp. indica GN=ARF11 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.678e-30
Identity = 63/103 (61.17%), Postives = 77/103 (74.76%), Query Frame = 2
Query:   62 VNPPNRTFVTVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGNELLN 370
            + PP RT+  V K GS GRS+D+T F +YHELRS +A MFGL+G LE P  S W+LV+VD ENDVLL+GD PW EF+N V CI+ILSP EVQQM + G  +LN
Sbjct:  847 MKPPVRTYTKVQKQGSVGRSIDVTGFRNYHELRSAIACMFGLQGKLEHPGSSEWKLVYVDYENDVLLVGDDPWEEFINCVRCIRILSPSEVQQMSENGMHVLN 949          
BLAST of EY660284 vs. ExPASy Swiss-Prot
Match: ARFE_ORYSJ (Auxin response factor 5 OS=Oryza sativa subsp. japonica GN=ARF5 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.855e-29
Identity = 64/108 (59.26%), Postives = 78/108 (72.22%), Query Frame = 2
Query:   77 RTFVTVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGNELLNSVPIQRLSNS 400
            RTF  VYK G+ GRS+DI ++S Y EL+  LARMFG+EG LED  R GW+LV+ D E+D+LLLGD PW EFVN V CI+ILSP EVQQM   G+   N +P Q  S+S
Sbjct: 1009 RTFTKVYKRGAVGRSIDIGRYSGYEELKHALARMFGIEGQLEDRQRIGWKLVYKDHEDDILLLGDDPWEEFVNCVRCIRILSPQEVQQMSLDGDLGSNVLPNQACSSS 1116          
BLAST of EY660284 vs. ExPASy Swiss-Prot
Match: ARFS_ORYSJ (Auxin response factor 19 OS=Oryza sativa subsp. japonica GN=ARF19 PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.423e-29
Identity = 68/129 (52.71%), Postives = 87/129 (67.44%), Query Frame = 2
Query:   77 RTFVTVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGNELLNSVPIQRLSNSSCDDYATR----QDSRNLSAG 451
            RTF  VYK G+ GRS+D+++FS Y EL+  LARMF +EG LE+  R GW+LV+ D E+D+LLLGD PW EFV  V CI+ILSP EVQQM   G +L N++P  +  +SS    A R    Q+S N S G
Sbjct: 1027 RTFTKVYKRGAVGRSIDMSQFSGYDELKHALARMFSIEGQLEERQRIGWKLVYKDHEDDILLLGDDPWEEFVGCVKCIRILSPQEVQQMSLEGCDLGNNIPPNQACSSSDGGNAWRARCDQNSGNPSNG 1155          
BLAST of EY660284 vs. ExPASy Swiss-Prot
Match: ARFE_ARATH (Auxin response factor 5 OS=Arabidopsis thaliana GN=ARF5 PE=1 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 4.133e-29
Identity = 64/111 (57.66%), Postives = 77/111 (69.37%), Query Frame = 2
Query:   68 PPNRTFVTVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGNELLNSVPIQRLSNS 400
            P  RT+  V K+GS GRS+D+T F  Y EL+S +  MFGLEG L  P  SGW+LV+VD E+DVLL+GD PW EFV  V CI+ILSP EVQQM + G +LLNS  I  L  S
Sbjct:  790 PRVRTYTKVQKTGSVGRSIDVTSFKDYEELKSAIECMFGLEGLLTHPQSSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPTEVQQMSEEGMKLLNSAGINDLKTS 900          
BLAST of EY660284 vs. ExPASy Swiss-Prot
Match: ARFS_ARATH (Auxin response factor 19 OS=Arabidopsis thaliana GN=ARF19 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.679e-28
Identity = 63/112 (56.25%), Postives = 80/112 (71.43%), Query Frame = 2
Query:   77 RTFVTVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGNELLNSVPIQRLSNSSCDD 412
            RT+  V K GS GRS+D+T++S Y ELR +LARMFG+EG LEDPL S W+LV+ D END+LL+GD PW EFVN V  IKILS  EVQQM   G+  L ++P    +N +C +
Sbjct:  958 RTYTKVQKRGSVGRSIDVTRYSGYDELRHDLARMFGIEGQLEDPLTSDWKLVYTDHENDILLVGDDPWEEFVNCVQNIKILSSVEVQQMSLDGD--LAAIP---TTNQACSE 1064          
BLAST of EY660284 vs. ExPASy Swiss-Prot
Match: ARFP_ORYSJ (Auxin response factor 16 OS=Oryza sativa subsp. japonica GN=ARF16 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.018e-27
Identity = 64/112 (57.14%), Postives = 77/112 (68.75%), Query Frame = 2
Query:   77 RTFVTVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGNELLNSVPIQRLSNSSCDD 412
            RTF  V K GS GRS+DIT++  Y ELR +LA MFG++G LEDP R  W+LV+VD END+LL+GD PW EFV  V  IKILS  EVQQM   G+  L  VP Q  + S+ DD
Sbjct:  940 RTFTKVQKRGSVGRSIDITRYRDYDELRHDLACMFGIQGQLEDPYRMDWKLVYVDHENDILLVGDDPWEEFVGCVKSIKILSAAEVQQMSLDGD--LGGVPPQTQACSASDD 1049          
BLAST of EY660284 vs. ExPASy Swiss-Prot
Match: ARFP_ORYSI (Auxin response factor 16 OS=Oryza sativa subsp. indica GN=ARF16 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.018e-27
Identity = 64/112 (57.14%), Postives = 77/112 (68.75%), Query Frame = 2
Query:   77 RTFVTVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGNELLNSVPIQRLSNSSCDD 412
            RTF  V K GS GRS+DIT++  Y ELR +LA MFG++G LEDP R  W+LV+VD END+LL+GD PW EFV  V  IKILS  EVQQM   G+  L  VP Q  + S+ DD
Sbjct:  940 RTFTKVQKRGSVGRSIDITRYRDYDELRHDLACMFGIQGQLEDPYRMDWKLVYVDHENDILLVGDDPWEEFVGCVKSIKILSAAEVQQMSLDGD--LGGVPPQTQACSASDD 1049          
BLAST of EY660284 vs. ExPASy Swiss-Prot
Match: ARFG_ARATH (Auxin response factor 7 OS=Arabidopsis thaliana GN=ARF7 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.329e-27
Identity = 62/110 (56.36%), Postives = 76/110 (69.09%), Query Frame = 2
Query:   77 RTFVTVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGNELLNSVPIQRLSNSSC 406
            RT+  V K GS GRS+D+ ++  Y ELR +LARMFG+EG LEDP  S W+LV+VD END+LL+GD PW EFVN V  IKILS  EVQQM   GN     VP+   +N +C
Sbjct: 1037 RTYTKVQKRGSVGRSIDVNRYRGYDELRHDLARMFGIEGQLEDPQTSDWKLVYVDHENDILLVGDDPWEEFVNCVQSIKILSSAEVQQMSLDGN--FAGVPV---TNQAC 1141          
BLAST of EY660284 vs. ExPASy Swiss-Prot
Match: ARFU_ORYSJ (Auxin response factor 21 OS=Oryza sativa subsp. japonica GN=ARF21 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 4.003e-24
Identity = 56/115 (48.70%), Postives = 76/115 (66.09%), Query Frame = 2
Query:   56 GQVNPPNRTFVTVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGNELLNSVPIQRLSNS 400
            G  +   RT+  V+K G+ GRS+DI ++S Y EL+ ++ARMFG+EG L D  R GW+LV+ D E DVLL+GD PW +FV  V CI+ILSP E  QM   G+   + +P Q  S+S
Sbjct:  991 GPAHQRMRTYTKVHKRGAVGRSIDINRYSGYDELKHDVARMFGIEGQLGDQNRVGWKLVYEDHEKDVLLVGDDPWEDFVKCVRCIRILSPQEEMQMRLVGDFGDSFLPNQACSSS 1105          
BLAST of EY660284 vs. ExPASy Swiss-Prot
Match: ARFD_ORYSJ (Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.436e-15
Identity = 41/95 (43.16%), Postives = 63/95 (66.32%), Query Frame = 2
Query:   77 RTFVTVYKSG-SFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGN 358
            R+   V+K G + GRS+D++KFS+Y EL++EL +MF  +G L    ++ WQ+V+ D E D++L+GD PW EF + V  I I +  EVQ+M  + N
Sbjct:  692 RSCTKVHKQGVALGRSVDLSKFSNYDELKAELDKMFEFDGELVSSNKN-WQIVYTDNEGDMMLVGDDPWEEFCSIVRKIYIYTKEEVQKMNSKSN 785          
The following BLAST results are available for this feature:
BLAST of EY660284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
ARFK_ORYSI1.678e-3061.17Auxin response factor 11 OS=Oryza sativa subsp. in... [more]
ARFE_ORYSJ1.855e-2959.26Auxin response factor 5 OS=Oryza sativa subsp. jap... [more]
ARFS_ORYSJ2.423e-2952.71Auxin response factor 19 OS=Oryza sativa subsp. ja... [more]
ARFE_ARATH4.133e-2957.66Auxin response factor 5 OS=Arabidopsis thaliana GN... [more]
ARFS_ARATH2.679e-2856.25Auxin response factor 19 OS=Arabidopsis thaliana G... [more]
ARFP_ORYSJ1.018e-2757.14Auxin response factor 16 OS=Oryza sativa subsp. ja... [more]
ARFP_ORYSI1.018e-2757.14Auxin response factor 16 OS=Oryza sativa subsp. in... [more]
ARFG_ARATH1.329e-2756.36Auxin response factor 7 OS=Arabidopsis thaliana GN... [more]
ARFU_ORYSJ4.003e-2448.70Auxin response factor 21 OS=Oryza sativa subsp. ja... [more]
ARFD_ORYSJ4.436e-1543.16Auxin response factor 4 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-E07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660284 ID=EY660284; Name=EY660284; organism=Citrus sinensis; type=EST; length=711bp
TGCGAAGACCCACGCGTCCGGATGAATTTTGCTCCTACAGGCTCCAGAAA
ATGTGGGCCAAGTAAACCCACCCAACAGAACCTTCGTTACGGTTTACAAG
TCGGGTTCCTTCGGTAGATCACTGGATATCACCAAATTCAGTAGCTACCA
TGAGCTGCGCAGTGAACTAGCTCGCATGTTTGGCCTTGAAGGCCATTTGG
AGGACCCCCTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAGAAT
GATGTACTTCTCCTTGGTGATGGCCCCTGGCCGGAGTTTGTAAACAGTGT
GTGGTGTATCAAAATACTCTCACCACCAGAAGTGCAGCAAATGGGCAAAC
GTGGCAATGAGCTTCTGAACTCAGTTCCAATTCAGAGGCTCTCCAACAGC
AGCTGTGATGATTATGCAACCCGGCAGGACTCCAGAAATTTGAGTGCTGG
TATAACATCCGTGGGGTCACTGGATTTCTGATCAATTTAACCAGTTAAGA
TACCATTCTCTCTTCTGTAATATTAGTGTCTGTTTCAATCCACGTAGGGG
TAGCGAGAGGCTACCTAATTTTAGCTTAAAGTTTATATATAAGCTAAACT
GTAATTATAAGATACATTTTCTATTCTGTGGTATGAAATACGCAATCAAT
ATTGATTAGGAGAGTTGTCCATGATGATAGCTGTTCCCCTTTAAAAAAAA
AAAAAAAAAAA
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