EY660284

Overview
NameEY660284
Unique NameEY660284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660284 vs. ExPASy Swiss-Prot
Match: ARFD_ARATH (Auxin response factor 4 OS=Arabidopsis thaliana GN=ARF4 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.883e-15
Identity = 38/110 (34.55%), Postives = 63/110 (57.27%), Query Frame = 2
Query:   77 RTFVTVYKSGS-FGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGNELLNSVPIQRLSNSS 403
            R    V+K GS  GR++D+++ + Y +L  EL R+F +EG L DP   GW++++ D END++++GD PW +F N VW I + +  EV+         L    +   ++ S
Sbjct:  665 RICTKVHKQGSQVGRAIDLSRLNGYDDLLMELERLFNMEGLLRDP-EKGWRILYTDSENDMMVVGDDPWHDFCNVVWKIHLYTKEEVENANDDNKSCLEQAALMMEASKS 773          
BLAST of EY660284 vs. ExPASy Swiss-Prot
Match: ARFX_ORYSJ (Auxin response factor 24 OS=Oryza sativa subsp. japonica GN=ARF24 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.905e-14
Identity = 42/96 (43.75%), Postives = 60/96 (62.50%), Query Frame = 2
Query:   59 QVNPPNRTFVTVYKSG-SFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQM 343
            Q N  +R+   V+K G + GRS+D+TKF+ Y EL +EL +MF   G L    ++ W +V+ D E D++L+GD PW EF N V  I I +  EVQ+M
Sbjct:  707 QQNGSSRSCKKVHKQGIALGRSIDLTKFTCYDELIAELDQMFDFNGELNSSSKN-WMVVYTDNEGDMMLVGDDPWNEFCNMVHKIFIYTREEVQKM 801          
BLAST of EY660284 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSJ (Auxin response factor 23 OS=Oryza sativa subsp. japonica GN=ARF23 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.152e-13
Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 2
Query:   77 RTFVTVYKSG-SFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQM 343
            R+   V+K G + GRS+D+TKF+ Y EL +EL  MF   G L+ P +  W +V+ D E D++L+GD PW EF + V  I I +  EVQ+M
Sbjct:  725 RSCKKVHKQGIALGRSVDLTKFNGYEELIAELDDMFDFNGELKGPKKE-WMVVYTDNEGDMMLVGDDPWIEFCDMVHKIFIYTREEVQRM 813          
BLAST of EY660284 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSI (Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.152e-13
Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 2
Query:   77 RTFVTVYKSG-SFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQM 343
            R+   V+K G + GRS+D+TKF+ Y EL +EL  MF   G L+ P +  W +V+ D E D++L+GD PW EF + V  I I +  EVQ+M
Sbjct:  725 RSCKKVHKQGIALGRSVDLTKFNGYEELIAELDDMFDFNGELKGPKKE-WMVVYTDNEGDMMLVGDDPWIEFCDMVHKIFIYTREEVQRM 813          
BLAST of EY660284 vs. ExPASy Swiss-Prot
Match: ARFB_ARATH (Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.423e-13
Identity = 40/101 (39.60%), Postives = 61/101 (60.40%), Query Frame = 2
Query:   44 PENVGQVNPPNRTFVTVYKSG-SFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQM 343
            P++       +R+   V+K G + GRS+D++KF +Y EL +EL R+F   G L  P +  W +V+ D END++L+GD PW EF   V  I I +  EV++M
Sbjct:  722 PKDAQTKTNSSRSCTKVHKQGIALGRSVDLSKFQNYEELVAELDRLFEFNGELMAP-KKDWLIVYTDEENDMMLVGDDPWQEFCCMVRKIFIYTKEEVRKM 821          
BLAST of EY660284 vs. ExPASy Swiss-Prot
Match: ARFI_ARATH (Auxin response factor 9 OS=Arabidopsis thaliana GN=ARF9 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 38/104 (36.54%), Postives = 61/104 (58.65%), Query Frame = 2
Query:  113 GRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQM--GKRGNELLNSVPIQRLSNSSCDDYA 418
            GR++D+     Y+EL  ++ ++F ++G L    R+ W++VF D E D++L+GD PWPEF N V  I I S  EV++M  G +   LL  V     + S  D+++
Sbjct:  536 GRAVDLNALKGYNELIDDIEKLFDIKGELRS--RNQWEIVFTDDEGDMMLVGDDPWPEFCNMVKRIFIWSKEEVKKMTPGNQLRMLLREVETTLTTTSKTDNHS 637          
BLAST of EY660284 vs. ExPASy Swiss-Prot
Match: ARFG_ORYSJ (Auxin response factor 7 OS=Oryza sativa subsp. japonica GN=ARF7 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.076e-11
Identity = 31/77 (40.26%), Postives = 51/77 (66.23%), Query Frame = 2
Query:  113 GRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQM 343
            GR++D+T+   Y +LR +L  MF ++G L   L+  W++V+ D E+D++L+GD PWPEF + V  I I +  E +Q+
Sbjct:  561 GRAVDLTRLHGYDDLRCKLEEMFDIQGELSASLKK-WKVVYTDDEDDMMLVGDDPWPEFCSMVKRIYIYTYEEAKQL 636          
BLAST of EY660284 vs. ExPASy Swiss-Prot
Match: ARFA_ARATH (Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 34/100 (34.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:   77 RTFVTVYKSGS-FGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGNELLNS 373
            R+   V+  GS  GR++D+T+   Y +L  +L  MF ++G L +  +  WQ+V+ D E+D++++GD PW EF   V  I I +P EV+++  +    +N+
Sbjct:  542 RSCTKVHMQGSAVGRAIDLTRSECYEDLFKKLEEMFDIKGELLESTKK-WQVVYTDDEDDMMMVGDDPWNEFCGMVRKIFIYTPEEVKKLSPKNKLAVNA 640          
The following BLAST results are available for this feature:
BLAST of EY660284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
ARFD_ARATH9.883e-1534.55Auxin response factor 4 OS=Arabidopsis thaliana GN... [more]
ARFX_ORYSJ4.905e-1443.75Auxin response factor 24 OS=Oryza sativa subsp. ja... [more]
ARFW_ORYSJ4.152e-1344.44Auxin response factor 23 OS=Oryza sativa subsp. ja... [more]
ARFW_ORYSI4.152e-1344.44Auxin response factor 23 OS=Oryza sativa subsp. in... [more]
ARFB_ARATH5.423e-1339.60Auxin response factor 2 OS=Arabidopsis thaliana GN... [more]
ARFI_ARATH2.691e-1236.54Auxin response factor 9 OS=Arabidopsis thaliana GN... [more]
ARFG_ORYSJ5.076e-1140.26Auxin response factor 7 OS=Oryza sativa subsp. jap... [more]
ARFA_ARATH6.629e-1134.00Auxin response factor 1 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-E07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660284 ID=EY660284; Name=EY660284; organism=Citrus sinensis; type=EST; length=711bp
TGCGAAGACCCACGCGTCCGGATGAATTTTGCTCCTACAGGCTCCAGAAA
ATGTGGGCCAAGTAAACCCACCCAACAGAACCTTCGTTACGGTTTACAAG
TCGGGTTCCTTCGGTAGATCACTGGATATCACCAAATTCAGTAGCTACCA
TGAGCTGCGCAGTGAACTAGCTCGCATGTTTGGCCTTGAAGGCCATTTGG
AGGACCCCCTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAGAAT
GATGTACTTCTCCTTGGTGATGGCCCCTGGCCGGAGTTTGTAAACAGTGT
GTGGTGTATCAAAATACTCTCACCACCAGAAGTGCAGCAAATGGGCAAAC
GTGGCAATGAGCTTCTGAACTCAGTTCCAATTCAGAGGCTCTCCAACAGC
AGCTGTGATGATTATGCAACCCGGCAGGACTCCAGAAATTTGAGTGCTGG
TATAACATCCGTGGGGTCACTGGATTTCTGATCAATTTAACCAGTTAAGA
TACCATTCTCTCTTCTGTAATATTAGTGTCTGTTTCAATCCACGTAGGGG
TAGCGAGAGGCTACCTAATTTTAGCTTAAAGTTTATATATAAGCTAAACT
GTAATTATAAGATACATTTTCTATTCTGTGGTATGAAATACGCAATCAAT
ATTGATTAGGAGAGTTGTCCATGATGATAGCTGTTCCCCTTTAAAAAAAA
AAAAAAAAAAA
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