EY660272

Overview
NameEY660272
Unique NameEY660272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length933
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A2_ARATH (Eukaryotic initiation factor 4A-2 OS=Arabidopsis thaliana GN=TIF4A-2 PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 3.412e-59
Identity = 100/119 (84.03%), Postives = 107/119 (89.92%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            LQENLLRGIYA+GFEKPSA ++RGIVPFCKGLDVIQQAQ+GTGKTATFCSG+LQQLDY L+QCQ LVLAPTRELA  IEKVMRALGDY G K HAC GGTSVRED+ I QAG HVVVGT
Sbjct:   46 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVGT 164          

HSP 2 Score: 50.0618 bits (118), Expect = 3.412e-59
Identity = 27/47 (57.45%), Postives = 33/47 (70.21%), Query Frame = 2
Query:  185 MAGKAPEGXQPEARQXDTKKNEPXATEGQD-XXTSYDEVYDSFDALG 322
            MAG APEG Q + RQ D + NE    +GQD   TSYDEV++SFDA+G
Sbjct:    1 MAGSAPEGTQFDTRQFDQRLNE--VLDGQDEFFTSYDEVHESFDAMG 45          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A_WHEAT (Eukaryotic initiation factor 4A OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 3.713e-58
Identity = 101/119 (84.87%), Postives = 108/119 (90.76%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            LQENLLRGIYA+GFEKPSA ++RGIVPFCKGLDVIQQAQ+GTGKTATFCSGILQQLDYGLV+CQ LVLAPTRELA  IEKVMRALGDYLG K HAC GGTSVRED+ I  +G HVVVGT
Sbjct:   48 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGT 166          

HSP 2 Score: 45.0542 bits (105), Expect = 3.713e-58
Identity = 23/47 (48.94%), Postives = 32/47 (68.09%), Query Frame = 2
Query:  185 MAGKAPEGXQPEARQXDTKKNEPXAT-EGQDXXTSYDEVYDSFDALG 322
            MAG APEG Q +A+  D+K  E  +  E ++  TSYDEV++SFD +G
Sbjct:    1 MAGMAPEGSQFDAKNYDSKMQELLSQGETEEFFTSYDEVHESFDDMG 47          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A3_ORYSJ (Eukaryotic initiation factor 4A-3 OS=Oryza sativa subsp. japonica GN=Os02g0146600 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 8.229e-58
Identity = 101/119 (84.87%), Postives = 108/119 (90.76%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            LQENLLRGIYA+GFEKPSA ++RGIVPFCKGLDVIQQAQ+GTGKTATFCSGILQQLDYGLV+CQ LVLAPTRELA  IEKVMRALGDYLG K HAC GGTSVRED+ I  +G HVVVGT
Sbjct:   48 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQSLVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGT 166          

HSP 2 Score: 43.8986 bits (102), Expect = 8.229e-58
Identity = 22/47 (46.81%), Postives = 31/47 (65.96%), Query Frame = 2
Query:  185 MAGKAPEGXQPEARQXDTKKNEPXAT-EGQDXXTSYDEVYDSFDALG 322
            MAG APEG Q +A+  D+K  E     + ++  TSYDEV++SFD +G
Sbjct:    1 MAGMAPEGSQFDAKHYDSKMQELLHQGDNEEFFTSYDEVFESFDDMG 47          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A_MAIZE (Eukaryotic initiation factor 4A OS=Zea mays PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 4.042e-57
Identity = 101/119 (84.87%), Postives = 108/119 (90.76%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            LQENLLRGIYA+GFEKPSA ++RGIVPFCKGLDVIQQAQ+GTGKTATFCSGILQQLDYGLV+CQ LVLAPTRELA  IEKVMRALGDYLG K HAC GGTSVRED+ I  +G HVVVGT
Sbjct:   44 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGT 162          

HSP 2 Score: 41.5874 bits (96), Expect = 4.042e-57
Identity = 22/46 (47.83%), Postives = 29/46 (63.04%), Query Frame = 2
Query:  185 MAGKAPEGXQPEARQXDTKKNEPXATEGQDXXTSYDEVYDSFDALG 322
            MAG APEG Q + +Q D K  E      +D  TSYD+V +SFD++G
Sbjct:    1 MAGLAPEGSQFDDKQYDKKMQEILT---EDFFTSYDDVCESFDSMG 43          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A1_ORYSJ (Eukaryotic initiation factor 4A-1 OS=Oryza sativa subsp. japonica GN=Os06g0701100 PE=2 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 8.955e-57
Identity = 99/119 (83.19%), Postives = 107/119 (89.92%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            LQENLLRGIYA+GFEKPSA ++RGIVPFCKGLDVIQQAQ+GTGKTATFCSGILQQLDY +V+CQ LVLAPTRELA  IEKVMRALGDYLG K HAC GGTSVRED+ I  +G HVVVGT
Sbjct:   48 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYAVVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGT 166          

HSP 2 Score: 43.8986 bits (102), Expect = 8.955e-57
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 2
Query:  185 MAGKAPEGXQPEARQXDTKKNEPXAT-EGQDXXTSYDEVYDSFDALG 322
            MAG APEG Q +A+  D+K  E     E ++  TSYDEV++SFD +G
Sbjct:    1 MAGMAPEGSQFDAKHYDSKMQELLNQGETEEFFTSYDEVHESFDDMG 47          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A3_ARATH (Eukaryotic initiation factor 4A-3 OS=Arabidopsis thaliana GN=TIF4A-3 PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.656e-55
Identity = 95/119 (79.83%), Postives = 105/119 (88.24%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            LQ +LLRGIYA+GFEKPSA ++RGI+PFCKGLDVIQQAQ+GTGKTATFCSG+LQQLD  LVQCQ LVLAPTRELA  IEKVMRALGDYLG K  AC GGTSVRED+ + Q+G HVVVGT
Sbjct:   48 LQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGT 166          

HSP 2 Score: 45.4394 bits (106), Expect = 1.656e-55
Identity = 24/46 (52.17%), Postives = 30/46 (65.22%), Query Frame = 2
Query:  185 MAGKAPEGXQPEARQXDTKKNEPXATEGQD-XXTSYDEVYDSFDAL 319
            MAG A +G Q + RQ DTK N     EG++   T+YDEV DSFDA+
Sbjct:    1 MAGMASDGTQYDPRQFDTKMNAILGEEGEETFYTNYDEVCDSFDAM 46          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A_DROME (Eukaryotic initiation factor 4A OS=Drosophila melanogaster GN=eIF-4a PE=2 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 4.559e-35
Identity = 73/119 (61.34%), Postives = 92/119 (77.31%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+E LLRGIY +GFEKPSA ++R I+P  +G DVI QAQ+GTGKTATF   ILQQ+D  + +CQ L+LAPTRELA  I++V+ ALG+Y+    HAC GGT+VRED  I ++G HVVVGT
Sbjct:   37 LREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQIDTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILESGCHVVVGT 155          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A2_CHICK (Eukaryotic initiation factor 4A-II OS=Gallus gallus GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.123e-33
Identity = 76/120 (63.33%), Postives = 91/120 (75.83%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQA-GGHVVVGT 680
            L+E+LLRGIYA+GFEKPSA ++R I+P  KG DVI QAQ+GTGKTATF   ILQQL+  L + Q LVLAPTRELA  I+KV+ ALGDY+G   HAC GGT+VR +    QA   H+VVGT
Sbjct:   40 LKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIDLKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGT 159          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A_MAGGR (ATP-dependent RNA helicase eIF4A OS=Magnaporthe grisea GN=TIF1 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.578e-33
Identity = 71/119 (59.66%), Postives = 90/119 (75.63%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+  LLRGIYA+GFE+PSA ++R I+P  KG DVI QAQ+GTGKTATF   +LQ++D  + QCQ L+LAPTRELA  I+KV+ A+GD++  + HAC GGTSVR+D    Q G  VVVGT
Sbjct:   30 LKSELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKIDTNVKQCQALILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTSVRDDMKALQDGPQVVVGT 148          

HSP 2 Score: 22.3274 bits (46), Expect = 2.578e-33
Identity = 11/28 (39.29%), Postives = 15/28 (53.57%), Query Frame = 2
Query:  263 EGQDXXTSYDEVYDSFDALGTAGKPFEG 346
            EGQ   ++YDE  DSFD +    +   G
Sbjct:   11 EGQ-IESNYDETVDSFDEMNLKSELLRG 37          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A_SCLS1 (ATP-dependent RNA helicase eIF4A OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tif1 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.357e-33
Identity = 71/119 (59.66%), Postives = 90/119 (75.63%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+  LLRG+YA+GFE+PSA ++R I+P  KG DVI QAQ+GTGKTATF   +LQ+LD  + QCQ L+LAPTRELA  I+KV+ A+GD++  + HAC GGTSVR+D    Q G  VVVGT
Sbjct:   32 LKPELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKLDPNVKQCQALILAPTRELAQQIQKVVVAIGDFMNVECHACIGGTSVRDDMKALQDGPQVVVGT 150          

HSP 2 Score: 21.9422 bits (45), Expect = 3.357e-33
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 2
Query:  263 EGQDXXTSYDEVYDSFDAL 319
            EGQ   ++YDE  DSFD +
Sbjct:   13 EGQ-IESNYDETVDSFDTM 30          
The following BLAST results are available for this feature:
BLAST of EY660272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
IF4A2_ARATH3.412e-5984.03Eukaryotic initiation factor 4A-2 OS=Arabidopsis t... [more]
IF4A_WHEAT3.713e-5884.87Eukaryotic initiation factor 4A OS=Triticum aestiv... [more]
IF4A3_ORYSJ8.229e-5884.87Eukaryotic initiation factor 4A-3 OS=Oryza sativa ... [more]
IF4A_MAIZE4.042e-5784.87Eukaryotic initiation factor 4A OS=Zea mays PE=2 S... [more]
IF4A1_ORYSJ8.955e-5783.19Eukaryotic initiation factor 4A-1 OS=Oryza sativa ... [more]
IF4A3_ARATH1.656e-5579.83Eukaryotic initiation factor 4A-3 OS=Arabidopsis t... [more]
IF4A_DROME4.559e-3561.34Eukaryotic initiation factor 4A OS=Drosophila mela... [more]
IF4A2_CHICK1.123e-3363.33Eukaryotic initiation factor 4A-II OS=Gallus gallu... [more]
IF4A_MAGGR2.578e-3359.66ATP-dependent RNA helicase eIF4A OS=Magnaporthe gr... [more]
IF4A_SCLS13.357e-3359.66ATP-dependent RNA helicase eIF4A OS=Sclerotinia sc... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-D06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660272 ID=EY660272; Name=EY660272; organism=Citrus sinensis; type=EST; length=933bp
TGTGGTACGCCTGAGGNACTGGTCCGGATTCTTTCANCAGGGGGGCGNCC
GCCACGGCGTGACAAGAGGAGGGTGTNAACCCNAGGAACAANANGCAGCA
AAAGAAAGAGGTGTGTCTCCAAAGAGAGAGGGAAAACCAACNCGNNCNCG
CGAAGANAANCACCAGCAGCAAAGCAGGGCAGAGATGGCTGGAAAGGCAC
CCGAAGGANCACAACCCGAAGCACGNCAGNAGGACACCAAGAAGAACGAA
CCGGNCGCGACGGAGGGGCAAGACCNCNNCACTTCTTATGATGAAGTTTA
TGACAGTTTTGATGCATTGGGTACTGCAGGAAAACCTTTTGAGGGGAATC
TATGCTTTTGGGTTTGAGAAGCCCTCTGCTAGTGAGGAAAGGGGAATTGT
TCCCTTCTGCAAGGGACTTGACGTCATTCAGCAGGCTCAGGCTGGAACTG
GGAAAACAGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGG
CTTGTCCAATGTCAGGGCCTGGTATTGGCACCCACTAGGGAACTAGCTGG
ACTGATTGAGAAAGTAATGAGGGCACTTGGCGATTATCTTGGGGGCAAGG
GTCATGCTTGTGGTGGTGGGACAAGTGTTCGCGAGGATAAGGGGATTTGT
CAAGCTGGGGGTCATGTGGTTGTTGGGACTCCTGGGGCGAGGGGTTGAAA
TGCTGCGCCGTGAGGTTTTAGCGCCCGGATTAATTTAACATGGTTGGACT
GGATGGGAGGTGATGAAAGGCTGTTCCCGGGTTGTAGGGTCGGATTTTTG
ATATTGTTGCGGAGGGTTGGGGGTAAGGTGAGGGGGGGGTCTCTCTGGGA
AATGGGTTCGGGGGGCCGGGGGATTGAGGGGAGTTGATGGAAAAGCTGGA
AGGATTTGGGGTAATGGGGGGAAATGCCCGTAG
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