EY660272

Overview
NameEY660272
Unique NameEY660272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length933
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A_TRYBB (Probable eukaryotic initiation factor 4A OS=Trypanosoma brucei brucei GN=Tb09.160.3270 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.528e-25
Identity = 63/123 (51.22%), Postives = 83/123 (67.48%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLG-GKGHACG---GGTSVREDKGICQAGGHVVVGT 680
            L +NLLRGIY+ GFEKPS+ ++R IVPF +G D+I QAQ+GTGKT  F  G+LQ+LD+     QGLVL+PTRELA    +V+  +G++L  G    C    GGT V++D    Q+G  V VGT
Sbjct:   33 LHQNLLRGIYSHGFEKPSSIQQRAIVPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNVLQGLVLSPTRELAMQTAEVITRIGEFLAEGSSSFCATFVGGTRVQDDYRKLQSGTIVAVGT 155          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: FAL1_CANGA (ATP-dependent RNA helicase FAL1 OS=Candida glabrata GN=FAL1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.528e-25
Identity = 63/120 (52.50%), Postives = 80/120 (66.67%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVRED-KGICQAGGHVVVGT 680
            L+E LLRGIY++GFE PSA + R I     G DVI QAQ+GTGKTATF  G+LQ +D      Q LVL+PTRELA  I KV+  LGDY+  K +A  GG ++++D K I + G  V+ GT
Sbjct:   30 LKEGLLRGIYSYGFEAPSAIQSRAITQIISGKDVIAQAQSGTGKTATFTIGMLQAIDLKKHDLQALVLSPTRELAAQIGKVVTNLGDYMNVKAYAMTGGKTMKDDLKKIQKHGCQVISGT 149          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A_YEAST (ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae GN=TIF1 PE=1 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 1.244e-24
Identity = 63/120 (52.50%), Postives = 84/120 (70.00%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVRED-KGICQAGGHVVVGT 680
            L ENLLRG++ +GFE+PSA ++R I+P  +G DV+ QAQ+GTGKT TF    LQ++D  +   Q L+LAPTRELA  I+KV+ AL  ++  K HAC GGTS  ED +G+  A   +VVGT
Sbjct:   29 LDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA--QIVVGT 146          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A_YEAS7 (ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae (strain YJM789) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.244e-24
Identity = 63/120 (52.50%), Postives = 84/120 (70.00%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVRED-KGICQAGGHVVVGT 680
            L ENLLRG++ +GFE+PSA ++R I+P  +G DV+ QAQ+GTGKT TF    LQ++D  +   Q L+LAPTRELA  I+KV+ AL  ++  K HAC GGTS  ED +G+  A   +VVGT
Sbjct:   29 LDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA--QIVVGT 146          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A_PICGU (ATP-dependent RNA helicase eIF4A OS=Pichia guilliermondii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.244e-24
Identity = 58/119 (48.74%), Postives = 82/119 (68.91%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+ N++RGI+ +G+E PSA ++R I+P  +G DV+ QAQ+GTGKTATF    LQ++D  L   Q L+LAPTRELA  I+ V+  +G YL    HA  GGTS+++D    ++G  +VVGT
Sbjct:   29 LKPNIVRGIFGYGYESPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENLKATQALILAPTRELALQIQNVITHIGLYLNVTVHASIGGTSMKDDIEAFKSGVQIVVGT 147          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A_CANGA (ATP-dependent RNA helicase eIF4A OS=Candida glabrata GN=TIF1 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.625e-24
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVRED-KGICQAGGHVVVGT 680
            L E LLRG++ +GF KPSA ++R I+P  +G DV+ QAQ+GTGKT TF    LQ++D  +   Q L+LAPTRELA  I+KV+ ALG ++  K HAC GGTS  ED +G+  A   +VVGT
Sbjct:   30 LNEKLLRGVFGYGFNKPSAIQQRAIMPIIEGNDVLAQAQSGTGKTGTFSIAALQRIDPAIKAPQALMLAPTRELALQIQKVVMALGFHMDIKVHACIGGTSFVEDAEGLRDA--QIVVGT 147          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: RH2_ARATH (DEAD-box ATP-dependent RNA helicase 2 OS=Arabidopsis thaliana GN=RH2 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 3.621e-24
Identity = 56/119 (47.06%), Postives = 80/119 (67.23%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            ++E++LRG+Y +GFEKPSA ++R ++P  +G DVI QAQ+GTGKT+     + Q +D    + Q L+L+PTRELA   EK ++A+G +   + HAC GG SV ED    + G HVV GT
Sbjct:   42 IKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEHGVHVVSGT 160          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A_PICST (ATP-dependent RNA helicase eIF4A OS=Pichia stipitis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.729e-24
Identity = 58/119 (48.74%), Postives = 82/119 (68.91%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+ N++RGI+ +G+E PSA ++R I+P  +G DV+ QAQ+GTGKTATF    LQ++D      Q L+LAPTRELA  I+ V+ ++G YL    HA  GGTS+++D    ++G  VVVGT
Sbjct:   30 LKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIKNVITSIGLYLNVTVHASIGGTSMQDDIEAFRSGVQVVVGT 148          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A_DEBHA (ATP-dependent RNA helicase eIF4A OS=Debaryomyces hansenii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.176e-24
Identity = 57/119 (47.90%), Postives = 81/119 (68.07%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+ N++RGI+ +G+E PSA ++R I+P  +G DV+ QAQ+GTGKTATF    LQ++D      Q L+LAPTRELA  I+ V+  +G YL    HA  GGTS+++D    ++G  +VVGT
Sbjct:   30 LKPNIVRGIFGYGYESPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIQNVITHIGLYLNVTVHASIGGTSMKDDIEAFKSGVQIVVGT 148          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: FAL1_VANPO (ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 8.066e-24
Identity = 60/120 (50.00%), Postives = 78/120 (65.00%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGG-HVVVGT 680
            L+++LLRGIY +GFE PSA + R I     G DVI QAQ+GTGKTATF  G+LQ +D      Q LVL+PTRELA  I +V+  LGDY+  + +A  GG ++++D    Q  G  VV GT
Sbjct:   30 LKDDLLRGIYGYGFEAPSAIQSRAITQIISGTDVIAQAQSGTGKTATFTIGMLQAIDLKRKDLQALVLSPTRELASQINQVVSNLGDYMNVQSYAMTGGKTMKDDLNRMQKNGCQVVSGT 149          
The following BLAST results are available for this feature:
BLAST of EY660272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
IF4A_TRYBB9.528e-2551.22Probable eukaryotic initiation factor 4A OS=Trypan... [more]
FAL1_CANGA9.528e-2552.50ATP-dependent RNA helicase FAL1 OS=Candida glabrat... [more]
IF4A_YEAST1.244e-2452.50ATP-dependent RNA helicase eIF4A OS=Saccharomyces ... [more]
IF4A_YEAS71.244e-2452.50ATP-dependent RNA helicase eIF4A OS=Saccharomyces ... [more]
IF4A_PICGU1.244e-2448.74ATP-dependent RNA helicase eIF4A OS=Pichia guillie... [more]
IF4A_CANGA1.625e-2452.50ATP-dependent RNA helicase eIF4A OS=Candida glabra... [more]
RH2_ARATH3.621e-2447.06DEAD-box ATP-dependent RNA helicase 2 OS=Arabidops... [more]
IF4A_PICST4.729e-2448.74ATP-dependent RNA helicase eIF4A OS=Pichia stipiti... [more]
IF4A_DEBHA6.176e-2447.90ATP-dependent RNA helicase eIF4A OS=Debaryomyces h... [more]
FAL1_VANPO8.066e-2450.00ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-D06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660272 ID=EY660272; Name=EY660272; organism=Citrus sinensis; type=EST; length=933bp
TGTGGTACGCCTGAGGNACTGGTCCGGATTCTTTCANCAGGGGGGCGNCC
GCCACGGCGTGACAAGAGGAGGGTGTNAACCCNAGGAACAANANGCAGCA
AAAGAAAGAGGTGTGTCTCCAAAGAGAGAGGGAAAACCAACNCGNNCNCG
CGAAGANAANCACCAGCAGCAAAGCAGGGCAGAGATGGCTGGAAAGGCAC
CCGAAGGANCACAACCCGAAGCACGNCAGNAGGACACCAAGAAGAACGAA
CCGGNCGCGACGGAGGGGCAAGACCNCNNCACTTCTTATGATGAAGTTTA
TGACAGTTTTGATGCATTGGGTACTGCAGGAAAACCTTTTGAGGGGAATC
TATGCTTTTGGGTTTGAGAAGCCCTCTGCTAGTGAGGAAAGGGGAATTGT
TCCCTTCTGCAAGGGACTTGACGTCATTCAGCAGGCTCAGGCTGGAACTG
GGAAAACAGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGG
CTTGTCCAATGTCAGGGCCTGGTATTGGCACCCACTAGGGAACTAGCTGG
ACTGATTGAGAAAGTAATGAGGGCACTTGGCGATTATCTTGGGGGCAAGG
GTCATGCTTGTGGTGGTGGGACAAGTGTTCGCGAGGATAAGGGGATTTGT
CAAGCTGGGGGTCATGTGGTTGTTGGGACTCCTGGGGCGAGGGGTTGAAA
TGCTGCGCCGTGAGGTTTTAGCGCCCGGATTAATTTAACATGGTTGGACT
GGATGGGAGGTGATGAAAGGCTGTTCCCGGGTTGTAGGGTCGGATTTTTG
ATATTGTTGCGGAGGGTTGGGGGTAAGGTGAGGGGGGGGTCTCTCTGGGA
AATGGGTTCGGGGGGCCGGGGGATTGAGGGGAGTTGATGGAAAAGCTGGA
AGGATTTGGGGTAATGGGGGGAAATGCCCGTAG
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