EY660272

Overview
NameEY660272
Unique NameEY660272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length933
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: DHH1_NEUCR (ATP-dependent RNA helicase dhh-1 OS=Neurospora crassa GN=dhh-1 PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.352e-15
Identity = 48/121 (39.67%), Postives = 69/121 (57.02%), Query Frame = 3
Query:  318 WVLQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            ++   +LL GI+  GFEKPS  +E  I     G D++ +A+ GTGKTA F    L +++  + + Q L+L PTRELA    +V + LG +LG       GGT +R+D    Q   H+VVGT
Sbjct:   50 FIHDRDLLMGIFEAGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALNKINPKVSKIQCLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDIVRLQDPVHIVVGT 170          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: DHH1_BOTFB (ATP-dependent RNA helicase dhh1 OS=Botryotinia fuckeliana (strain B05.10) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.352e-15
Identity = 46/119 (38.66%), Postives = 69/119 (57.98%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            ++  LL GI+  G+EKPS  +E  I     G D++ +A+ GTGKTA F    L++++    + Q L+L PTRELA    +V + LG +LG       GGT++R+D    Q   H++VGT
Sbjct:   54 IKRELLMGIFEMGYEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALERINPKNTKVQCLILVPTRELALQTSQVCKTLGQHLGINVMVTTGGTTLRDDILRLQEPVHIIVGT 172          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: RH8_ARATH (DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana GN=RH8 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.072e-15
Identity = 46/121 (38.02%), Postives = 70/121 (57.85%), Query Frame = 3
Query:  318 WVLQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            + L+  LL GIY  GFE+PS  +E  I     G D++ +A+ GTGKTA FC  +L+++D      Q +++ PTRELA    +V + LG +L  +     GGTS+++D        H++VGT
Sbjct:  136 YFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGT 256          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: DHH1_PICGU (ATP-dependent RNA helicase DHH1 OS=Pichia guilliermondii GN=DHH1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.072e-15
Identity = 49/119 (41.18%), Postives = 69/119 (57.98%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+  LL GI+  GFEKPS  +E  I     G D++ +A+ GTGKTA+F    LQQ+   L + Q L+L PTRELA    +V++ LG +L  +     GGT +R+D        H++VGT
Sbjct:   36 LKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPALQQVKTKLNKIQVLILVPTRELALQTSQVVKTLGKHLKLQCMVTTGGTLLRDDVMRLDEPVHILVGT 154          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: DHH1_CANGA (ATP-dependent RNA helicase DHH1 OS=Candida glabrata GN=DHH1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.072e-15
Identity = 48/119 (40.34%), Postives = 68/119 (57.14%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+  LL GI+  GFEKPS  +E  I     G D++ +A+ GTGKTA F    L+++   L + Q L++ PTRELA    +V+R LG + G       GGT++R+D        HV+VGT
Sbjct:   38 LKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKIKPKLNKIQALIMVPTRELALQTSQVIRTLGRHCGVSCMVTTGGTNLRDDILRLNETVHVLVGT 156          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: DHH1_KLULA (ATP-dependent RNA helicase DHH1 OS=Kluyveromyces lactis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.012e-15
Identity = 47/119 (39.50%), Postives = 68/119 (57.14%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+  LL GI+  GFEKPS  +E  I     G D++ +A+ GTGKTA F    L+++   L + Q L++ PTRELA    +V+R LG + G       GGT++R+D        H++VGT
Sbjct:   43 LKRELLMGIFEAGFEKPSPIQEEAIPVAIAGKDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIMRLNEPVHILVGT 161          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: DHH1_YEAST (ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae GN=DHH1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.240e-15
Identity = 47/119 (39.50%), Postives = 68/119 (57.14%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+  LL GI+  GFEKPS  +E  I     G D++ +A+ GTGKTA F    L+++   L + Q L++ PTRELA    +V+R LG + G       GGT++R+D        H++VGT
Sbjct:   53 LKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGT 171          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: DHH1_YEAS7 (ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DHH1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.240e-15
Identity = 47/119 (39.50%), Postives = 68/119 (57.14%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+  LL GI+  GFEKPS  +E  I     G D++ +A+ GTGKTA F    L+++   L + Q L++ PTRELA    +V+R LG + G       GGT++R+D        H++VGT
Sbjct:   53 LKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGT 171          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: DHH1_SCHPO (Putative ATP-dependent RNA helicase ste13 OS=Schizosaccharomyces pombe GN=ste13 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.240e-15
Identity = 47/121 (38.84%), Postives = 69/121 (57.02%), Query Frame = 3
Query:  318 WVLQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            + L+  LL GI+  GFE+PS  +E  I     G D++ +A+ GTGKTA F    L+++D    + Q L+L PTRELA    +V + LG ++  K     GGT++R+D        H+VVGT
Sbjct:   49 YYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGT 169          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: RH6_ORYSJ (DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa subsp. japonica GN=Os04g0533000 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.844e-15
Identity = 47/121 (38.84%), Postives = 69/121 (57.02%), Query Frame = 3
Query:  318 WVLQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            + L+  LL GIY  GFE+PS  +E  I     G D++ +A+ GTGKTA FC   L+++D      Q ++L PTRELA    +V + LG +L  +     GGTS+++D        H++VGT
Sbjct:  129 YFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDKNAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIVRLYQPVHLLVGT 249          
The following BLAST results are available for this feature:
BLAST of EY660272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
DHH1_NEUCR2.352e-1539.67ATP-dependent RNA helicase dhh-1 OS=Neurospora cra... [more]
DHH1_BOTFB2.352e-1538.66ATP-dependent RNA helicase dhh1 OS=Botryotinia fuc... [more]
RH8_ARATH3.072e-1538.02DEAD-box ATP-dependent RNA helicase 8 OS=Arabidops... [more]
DHH1_PICGU3.072e-1541.18ATP-dependent RNA helicase DHH1 OS=Pichia guillier... [more]
DHH1_CANGA3.072e-1540.34ATP-dependent RNA helicase DHH1 OS=Candida glabrat... [more]
DHH1_KLULA4.012e-1539.50ATP-dependent RNA helicase DHH1 OS=Kluyveromyces l... [more]
DHH1_YEAST5.240e-1539.50ATP-dependent RNA helicase DHH1 OS=Saccharomyces c... [more]
DHH1_YEAS75.240e-1539.50ATP-dependent RNA helicase DHH1 OS=Saccharomyces c... [more]
DHH1_SCHPO5.240e-1538.84Putative ATP-dependent RNA helicase ste13 OS=Schiz... [more]
RH6_ORYSJ6.844e-1538.84DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-D06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660272 ID=EY660272; Name=EY660272; organism=Citrus sinensis; type=EST; length=933bp
TGTGGTACGCCTGAGGNACTGGTCCGGATTCTTTCANCAGGGGGGCGNCC
GCCACGGCGTGACAAGAGGAGGGTGTNAACCCNAGGAACAANANGCAGCA
AAAGAAAGAGGTGTGTCTCCAAAGAGAGAGGGAAAACCAACNCGNNCNCG
CGAAGANAANCACCAGCAGCAAAGCAGGGCAGAGATGGCTGGAAAGGCAC
CCGAAGGANCACAACCCGAAGCACGNCAGNAGGACACCAAGAAGAACGAA
CCGGNCGCGACGGAGGGGCAAGACCNCNNCACTTCTTATGATGAAGTTTA
TGACAGTTTTGATGCATTGGGTACTGCAGGAAAACCTTTTGAGGGGAATC
TATGCTTTTGGGTTTGAGAAGCCCTCTGCTAGTGAGGAAAGGGGAATTGT
TCCCTTCTGCAAGGGACTTGACGTCATTCAGCAGGCTCAGGCTGGAACTG
GGAAAACAGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGG
CTTGTCCAATGTCAGGGCCTGGTATTGGCACCCACTAGGGAACTAGCTGG
ACTGATTGAGAAAGTAATGAGGGCACTTGGCGATTATCTTGGGGGCAAGG
GTCATGCTTGTGGTGGTGGGACAAGTGTTCGCGAGGATAAGGGGATTTGT
CAAGCTGGGGGTCATGTGGTTGTTGGGACTCCTGGGGCGAGGGGTTGAAA
TGCTGCGCCGTGAGGTTTTAGCGCCCGGATTAATTTAACATGGTTGGACT
GGATGGGAGGTGATGAAAGGCTGTTCCCGGGTTGTAGGGTCGGATTTTTG
ATATTGTTGCGGAGGGTTGGGGGTAAGGTGAGGGGGGGGTCTCTCTGGGA
AATGGGTTCGGGGGGCCGGGGGATTGAGGGGAGTTGATGGAAAAGCTGGA
AGGATTTGGGGTAATGGGGGGAAATGCCCGTAG
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