EY660272

Overview
NameEY660272
Unique NameEY660272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length933
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: UAP56_MOUSE (Spliceosome RNA helicase Bat1 OS=Mus musculus GN=Bat1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.591e-11
Identity = 47/123 (38.21%), Postives = 65/123 (52.85%), Query Frame = 3
Query:  318 WVLQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGG-KGHACGGGTSVREDKGICQAG-GHVVVGT 680
            ++L+  LLR I   GFE PS  +   I     G+DV+ QA++G GKTA F    LQQL+    Q   LV+  TRELA  I K       Y+   K     GG S+++D+ + +    H+VVGT
Sbjct:   50 FLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGT 172          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: UAP56_MACMU (Spliceosome RNA helicase BAT1 OS=Macaca mulatta GN=BAT1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.591e-11
Identity = 47/123 (38.21%), Postives = 65/123 (52.85%), Query Frame = 3
Query:  318 WVLQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGG-KGHACGGGTSVREDKGICQAG-GHVVVGT 680
            ++L+  LLR I   GFE PS  +   I     G+DV+ QA++G GKTA F    LQQL+    Q   LV+  TRELA  I K       Y+   K     GG S+++D+ + +    H+VVGT
Sbjct:   50 FLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGT 172          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: UAP56_HUMAN (Spliceosome RNA helicase BAT1 OS=Homo sapiens GN=BAT1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.591e-11
Identity = 47/123 (38.21%), Postives = 65/123 (52.85%), Query Frame = 3
Query:  318 WVLQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGG-KGHACGGGTSVREDKGICQAG-GHVVVGT 680
            ++L+  LLR I   GFE PS  +   I     G+DV+ QA++G GKTA F    LQQL+    Q   LV+  TRELA  I K       Y+   K     GG S+++D+ + +    H+VVGT
Sbjct:   50 FLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGT 172          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: UAP56_CANFA (Spliceosome RNA helicase BAT1 OS=Canis familiaris GN=BAT1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.591e-11
Identity = 47/123 (38.21%), Postives = 65/123 (52.85%), Query Frame = 3
Query:  318 WVLQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGG-KGHACGGGTSVREDKGICQAG-GHVVVGT 680
            ++L+  LLR I   GFE PS  +   I     G+DV+ QA++G GKTA F    LQQL+    Q   LV+  TRELA  I K       Y+   K     GG S+++D+ + +    H+VVGT
Sbjct:   50 FLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGT 172          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: UAP56_BOVIN (Spliceosome RNA helicase BAT1 OS=Bos taurus GN=BAT1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.591e-11
Identity = 47/123 (38.21%), Postives = 65/123 (52.85%), Query Frame = 3
Query:  318 WVLQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGG-KGHACGGGTSVREDKGICQAG-GHVVVGT 680
            ++L+  LLR I   GFE PS  +   I     G+DV+ QA++G GKTA F    LQQL+    Q   LV+  TRELA  I K       Y+   K     GG S+++D+ + +    H+VVGT
Sbjct:   50 FLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIVVGT 172          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: DDX20_MOUSE (Probable ATP-dependent RNA helicase DDX20 OS=Mus musculus GN=Ddx20 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.591e-11
Identity = 47/121 (38.84%), Postives = 68/121 (56.20%), Query Frame = 3
Query:  321 VLQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGG-KGHACGGGTSVREDKGICQAGGHVVVGT 680
            +L   +L G+ A GFE+PS  + + I     GLD+I QA++GTGKT  F +  L  L       Q L+LAPTRE+A  I  V+ A+G  + G + H   GGT + +DK   +   H+ VG+
Sbjct:   69 LLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLILENYSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKK-CHIAVGS 188          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: DDX39_MOUSE (ATP-dependent RNA helicase DDX39 OS=Mus musculus GN=Ddx39 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.996e-11
Identity = 47/123 (38.21%), Postives = 65/123 (52.85%), Query Frame = 3
Query:  318 WVLQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGG-KGHACGGGTSVREDKGICQAG-GHVVVGT 680
            ++L+  LLR I   GFE PS  +   I     G+DV+ QA++G GKTA F    LQQ++    Q   LV+  TRELA  I K       Y+   K     GG S+++D+ + +    HVVVGT
Sbjct:   49 FLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVVVGT 171          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: UAP56_CHICK (Spliceosome RNA helicase BAT1 OS=Gallus gallus GN=BAT1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.831e-11
Identity = 47/123 (38.21%), Postives = 65/123 (52.85%), Query Frame = 3
Query:  318 WVLQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGG-KGHACGGGTSVREDKGICQAG-GHVVVGT 680
            ++L+  LLR I   GFE PS  +   I     G+DV+ QA++G GKTA F    LQQL+    Q   LV+  TRELA  I K       Y+   K     GG +V++D+ + +    H+VVGT
Sbjct:   50 FLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLAVKKDEEVLKKNCPHIVVGT 172          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: RRP3_KLULA (ATP-dependent rRNA helicase RRP3 OS=Kluyveromyces lactis GN=RRP3 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.831e-11
Identity = 39/119 (32.77%), Postives = 58/119 (48.74%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L   L+       + KP+  + + I P  KG D+I  AQ G+GKTA F   IL QL +        +LAPTRELA  I++   +LG  +G +     GG S+ +         H+++ T
Sbjct:   74 LVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIAT 192          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: DDX39_RAT (ATP-dependent RNA helicase DDX39 OS=Rattus norvegicus GN=Ddx39 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.831e-11
Identity = 47/123 (38.21%), Postives = 65/123 (52.85%), Query Frame = 3
Query:  318 WVLQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGG-KGHACGGGTSVREDKGICQAG-GHVVVGT 680
            ++L+  LLR I   GFE PS  +   I     G+DV+ QA++G GKTA F    LQQ++    Q   LV+  TRELA  I K       Y+   K     GG S+++D+ + +    HVVVGT
Sbjct:   49 FLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPINGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVVVGT 171          
The following BLAST results are available for this feature:
BLAST of EY660272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
UAP56_MOUSE4.591e-1138.21Spliceosome RNA helicase Bat1 OS=Mus musculus GN=B... [more]
UAP56_MACMU4.591e-1138.21Spliceosome RNA helicase BAT1 OS=Macaca mulatta GN... [more]
UAP56_HUMAN4.591e-1138.21Spliceosome RNA helicase BAT1 OS=Homo sapiens GN=B... [more]
UAP56_CANFA4.591e-1138.21Spliceosome RNA helicase BAT1 OS=Canis familiaris ... [more]
UAP56_BOVIN4.591e-1138.21Spliceosome RNA helicase BAT1 OS=Bos taurus GN=BAT... [more]
DDX20_MOUSE4.591e-1138.84Probable ATP-dependent RNA helicase DDX20 OS=Mus m... [more]
DDX39_MOUSE5.996e-1138.21ATP-dependent RNA helicase DDX39 OS=Mus musculus G... [more]
UAP56_CHICK7.831e-1138.21Spliceosome RNA helicase BAT1 OS=Gallus gallus GN=... [more]
RRP3_KLULA7.831e-1132.77ATP-dependent rRNA helicase RRP3 OS=Kluyveromyces ... [more]
DDX39_RAT7.831e-1138.21ATP-dependent RNA helicase DDX39 OS=Rattus norvegi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-D06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660272 ID=EY660272; Name=EY660272; organism=Citrus sinensis; type=EST; length=933bp
TGTGGTACGCCTGAGGNACTGGTCCGGATTCTTTCANCAGGGGGGCGNCC
GCCACGGCGTGACAAGAGGAGGGTGTNAACCCNAGGAACAANANGCAGCA
AAAGAAAGAGGTGTGTCTCCAAAGAGAGAGGGAAAACCAACNCGNNCNCG
CGAAGANAANCACCAGCAGCAAAGCAGGGCAGAGATGGCTGGAAAGGCAC
CCGAAGGANCACAACCCGAAGCACGNCAGNAGGACACCAAGAAGAACGAA
CCGGNCGCGACGGAGGGGCAAGACCNCNNCACTTCTTATGATGAAGTTTA
TGACAGTTTTGATGCATTGGGTACTGCAGGAAAACCTTTTGAGGGGAATC
TATGCTTTTGGGTTTGAGAAGCCCTCTGCTAGTGAGGAAAGGGGAATTGT
TCCCTTCTGCAAGGGACTTGACGTCATTCAGCAGGCTCAGGCTGGAACTG
GGAAAACAGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGG
CTTGTCCAATGTCAGGGCCTGGTATTGGCACCCACTAGGGAACTAGCTGG
ACTGATTGAGAAAGTAATGAGGGCACTTGGCGATTATCTTGGGGGCAAGG
GTCATGCTTGTGGTGGTGGGACAAGTGTTCGCGAGGATAAGGGGATTTGT
CAAGCTGGGGGTCATGTGGTTGTTGGGACTCCTGGGGCGAGGGGTTGAAA
TGCTGCGCCGTGAGGTTTTAGCGCCCGGATTAATTTAACATGGTTGGACT
GGATGGGAGGTGATGAAAGGCTGTTCCCGGGTTGTAGGGTCGGATTTTTG
ATATTGTTGCGGAGGGTTGGGGGTAAGGTGAGGGGGGGGTCTCTCTGGGA
AATGGGTTCGGGGGGCCGGGGGATTGAGGGGAGTTGATGGAAAAGCTGGA
AGGATTTGGGGTAATGGGGGGAAATGCCCGTAG
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