EY660272

Overview
NameEY660272
Unique NameEY660272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length933
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A1_MOUSE (Eukaryotic initiation factor 4A-I OS=Mus musculus GN=Eif4a1 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.766e-32
Identity = 73/120 (60.83%), Postives = 89/120 (74.17%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVR-EDKGICQAGGHVVVGT 680
            L E+LLRGIYA+GFEKPSA ++R I+P  KG DVI QAQ+GTGKTATF   ILQQ++  L   Q LVLAPTRELA  I+KV+ ALGDY+G   HAC GGT+VR E + +     H++VGT
Sbjct:   39 LSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGT 158          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A1_MACFA (Eukaryotic initiation factor 4A-I OS=Macaca fascicularis GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.766e-32
Identity = 73/120 (60.83%), Postives = 89/120 (74.17%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVR-EDKGICQAGGHVVVGT 680
            L E+LLRGIYA+GFEKPSA ++R I+P  KG DVI QAQ+GTGKTATF   ILQQ++  L   Q LVLAPTRELA  I+KV+ ALGDY+G   HAC GGT+VR E + +     H++VGT
Sbjct:   39 LSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGT 158          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A1_HUMAN (Eukaryotic initiation factor 4A-I OS=Homo sapiens GN=EIF4A1 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.766e-32
Identity = 73/120 (60.83%), Postives = 89/120 (74.17%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVR-EDKGICQAGGHVVVGT 680
            L E+LLRGIYA+GFEKPSA ++R I+P  KG DVI QAQ+GTGKTATF   ILQQ++  L   Q LVLAPTRELA  I+KV+ ALGDY+G   HAC GGT+VR E + +     H++VGT
Sbjct:   39 LSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGT 158          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A1_BOVIN (Eukaryotic initiation factor 4A-I OS=Bos taurus GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.766e-32
Identity = 73/120 (60.83%), Postives = 89/120 (74.17%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVR-EDKGICQAGGHVVVGT 680
            L E+LLRGIYA+GFEKPSA ++R I+P  KG DVI QAQ+GTGKTATF   ILQQ++  L   Q LVLAPTRELA  I+KV+ ALGDY+G   HAC GGT+VR E + +     H++VGT
Sbjct:   39 LSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGT 158          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A_PHANO (ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria nodorum GN=TIF1 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 3.618e-32
Identity = 69/119 (57.98%), Postives = 87/119 (73.11%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+  LLRG+YA+GFE+PSA ++R I+P  KG DVI QAQ+GTGKTATF    LQ++D  +  CQ L+LAPTRELA  I+KV+ A+GD++    HAC GGTSVR+D    Q G  VVVGT
Sbjct:   30 LKAELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISTLQKIDSNVKACQALILAPTRELAQQIQKVVVAIGDFMDVACHACIGGTSVRDDMKALQDGPQVVVGT 148          

HSP 2 Score: 23.8682 bits (50), Expect = 3.618e-32
Identity = 12/28 (42.86%), Postives = 16/28 (57.14%), Query Frame = 2
Query:  263 EGQDXXTSYDEVYDSFDALGTAGKPFEG 346
            EGQ   ++YDE  DSFDA+    +   G
Sbjct:   11 EGQ-IESNYDETTDSFDAMNLKAELLRG 37          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A_COCIM (ATP-dependent RNA helicase eIF4A OS=Coccidioides immitis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 3.618e-32
Identity = 69/119 (57.98%), Postives = 87/119 (73.11%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+  LLRG+YA+GFE+PSA ++R I+P  KG DVI QAQ+GTGKTATF    LQ++D  L  CQ L+LAPTRELA  I+KV+ A+GD++  + HAC GGT+VRED      G  VVVGT
Sbjct:   32 LRAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMSVECHACIGGTNVREDIKALNDGPQVVVGT 150          

HSP 2 Score: 24.2534 bits (51), Expect = 3.618e-32
Identity = 9/22 (40.91%), Postives = 14/22 (63.64%), Query Frame = 2
Query:  281 TSYDEVYDSFDALGTAGKPFEG 346
            ++YDE+ DSFDA+    +   G
Sbjct:   18 SNYDEITDSFDAMNLRAELLRG 39          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A3_SALSA (Eukaryotic initiation factor 4A-III OS=Salmo salar GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.718e-32
Identity = 71/119 (59.66%), Postives = 88/119 (73.95%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+E+LLRGIYA+GFEKPSA ++R I    KG DVI Q+Q+GTGKTATFC  +LQ LD  + + Q L+LAPTRELAG I+KV+ ALGDY+  + H+C GGT+V ED      G HVV GT
Sbjct:   40 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHSCIGGTNVGEDIRKLDYGQHVVAGT 158          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A_EMENI (ATP-dependent RNA helicase eIF4A OS=Emericella nidulans GN=tif1 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.130e-32
Identity = 66/119 (55.46%), Postives = 88/119 (73.95%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+  LLRG+YA+GFE+PSA ++R I+P  KG DVI QAQ+GTGKTATF    LQ+LD  +  CQ L++APTRELA  I+KV+ A+GD++  + HAC GGT+VR+D    + G  +VVGT
Sbjct:   55 LKPELLRGVYAYGFERPSAIQQRAILPIVKGNDVIAQAQSGTGKTATFSISALQKLDPNVKACQALIVAPTRELAQQIQKVVIAIGDFMNIQCHACIGGTAVRDDMNALREGPQIVVGT 173          

HSP 2 Score: 24.6386 bits (52), Expect = 6.130e-32
Identity = 11/23 (47.83%), Postives = 16/23 (69.57%), Query Frame = 2
Query:  251 PXATEGQDXXTSYDEVYDSFDAL 319
            P A  GQ   ++YDE+ DSFD++
Sbjct:   32 PTARHGQ-IESNYDEITDSFDSM 53          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A_ASPNC (ATP-dependent RNA helicase eIF4A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=tif1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.990e-32
Identity = 67/119 (56.30%), Postives = 87/119 (73.11%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+  LLRG+YA+GFE+PSA ++R I P   G DVI QAQ+GTGKTATF    LQ++D  L  CQ L++APTRELA  I+KV+ A+GD++  + HAC GGT+VR+D    +AG  VVVGT
Sbjct:   32 LKPELLRGVYAYGFERPSAIQQRAIKPIIAGHDVIAQAQSGTGKTATFSISALQKIDQELKACQALIVAPTRELAQQIQKVVVAIGDFMNIECHACIGGTNVRDDMNALRAGPQVVVGT 150          

HSP 2 Score: 25.0238 bits (53), Expect = 7.990e-32
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = 2
Query:  263 EGQDXXTSYDEVYDSFDAL 319
            EGQ   T+YDEV DSFD++
Sbjct:   13 EGQ-IETNYDEVTDSFDSM 30          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A_ASPOR (ATP-dependent RNA helicase eIF4A OS=Aspergillus oryzae GN=tif1 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.040e-31
Identity = 69/119 (57.98%), Postives = 85/119 (71.43%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+  LLRG+YA+GFE+PSA ++R I P  KG DVI QAQ+GTGKTATF    LQ+LD  +  CQ L+LAPTRELA  I+KV+ A+GD++    HAC GGT+VRED      G  VVVGT
Sbjct:   55 LKPELLRGVYAYGFERPSAIQQRAIKPIIKGSDVIAQAQSGTGKTATFSISALQKLDPNVKGCQALILAPTRELAQQIQKVVVAIGDFMNITCHACIGGTAVREDMKALGEGPEVVVGT 173          

HSP 2 Score: 25.0238 bits (53), Expect = 1.040e-31
Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 2
Query:  281 TSYDEVYDSFDAL 319
            T+YDE+ DSFDA+
Sbjct:   41 TNYDEITDSFDAM 53          
The following BLAST results are available for this feature:
BLAST of EY660272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
IF4A1_MOUSE2.766e-3260.83Eukaryotic initiation factor 4A-I OS=Mus musculus ... [more]
IF4A1_MACFA2.766e-3260.83Eukaryotic initiation factor 4A-I OS=Macaca fascic... [more]
IF4A1_HUMAN2.766e-3260.83Eukaryotic initiation factor 4A-I OS=Homo sapiens ... [more]
IF4A1_BOVIN2.766e-3260.83Eukaryotic initiation factor 4A-I OS=Bos taurus GN... [more]
IF4A_PHANO3.618e-3257.98ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria ... [more]
IF4A_COCIM3.618e-3257.98ATP-dependent RNA helicase eIF4A OS=Coccidioides i... [more]
IF4A3_SALSA4.718e-3259.66Eukaryotic initiation factor 4A-III OS=Salmo salar... [more]
IF4A_EMENI6.130e-3255.46ATP-dependent RNA helicase eIF4A OS=Emericella nid... [more]
IF4A_ASPNC7.990e-3256.30ATP-dependent RNA helicase eIF4A OS=Aspergillus ni... [more]
IF4A_ASPOR1.040e-3157.98ATP-dependent RNA helicase eIF4A OS=Aspergillus or... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-D06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660272 ID=EY660272; Name=EY660272; organism=Citrus sinensis; type=EST; length=933bp
TGTGGTACGCCTGAGGNACTGGTCCGGATTCTTTCANCAGGGGGGCGNCC
GCCACGGCGTGACAAGAGGAGGGTGTNAACCCNAGGAACAANANGCAGCA
AAAGAAAGAGGTGTGTCTCCAAAGAGAGAGGGAAAACCAACNCGNNCNCG
CGAAGANAANCACCAGCAGCAAAGCAGGGCAGAGATGGCTGGAAAGGCAC
CCGAAGGANCACAACCCGAAGCACGNCAGNAGGACACCAAGAAGAACGAA
CCGGNCGCGACGGAGGGGCAAGACCNCNNCACTTCTTATGATGAAGTTTA
TGACAGTTTTGATGCATTGGGTACTGCAGGAAAACCTTTTGAGGGGAATC
TATGCTTTTGGGTTTGAGAAGCCCTCTGCTAGTGAGGAAAGGGGAATTGT
TCCCTTCTGCAAGGGACTTGACGTCATTCAGCAGGCTCAGGCTGGAACTG
GGAAAACAGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGG
CTTGTCCAATGTCAGGGCCTGGTATTGGCACCCACTAGGGAACTAGCTGG
ACTGATTGAGAAAGTAATGAGGGCACTTGGCGATTATCTTGGGGGCAAGG
GTCATGCTTGTGGTGGTGGGACAAGTGTTCGCGAGGATAAGGGGATTTGT
CAAGCTGGGGGTCATGTGGTTGTTGGGACTCCTGGGGCGAGGGGTTGAAA
TGCTGCGCCGTGAGGTTTTAGCGCCCGGATTAATTTAACATGGTTGGACT
GGATGGGAGGTGATGAAAGGCTGTTCCCGGGTTGTAGGGTCGGATTTTTG
ATATTGTTGCGGAGGGTTGGGGGTAAGGTGAGGGGGGGGTCTCTCTGGGA
AATGGGTTCGGGGGGCCGGGGGATTGAGGGGAGTTGATGGAAAAGCTGGA
AGGATTTGGGGTAATGGGGGGAAATGCCCGTAG
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