EY660272

Overview
NameEY660272
Unique NameEY660272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length933
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A_USTMA (ATP-dependent RNA helicase eIF4A OS=Ustilago maydis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.051e-31
Identity = 72/119 (60.50%), Postives = 86/119 (72.27%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+E LLRG+YA+GFE+PSA + R IVP  KG DVI QAQ+GTGKTATF   ILQ++D  +   Q L+LAPTRELA  I+KV+ ALGDY+    HAC GGT+VRED      G  VVVGT
Sbjct:   45 LKEELLRGVYAYGFERPSAIQARAIVPVIKGHDVIAQAQSGTGKTATFSIAILQRIDPSIKAVQALILAPTRELAQQIQKVVIALGDYMKIDCHACIGGTNVREDMAKLNEGAQVVVGT 163          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A_CAEEL (Eukaryotic initiation factor 4A OS=Caenorhabditis elegans GN=inf-1 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.793e-31
Identity = 74/119 (62.18%), Postives = 87/119 (73.11%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+E LLRGIY FGFEKPSA ++R IVP   G DVI QAQ+GTGKTATF   ILQ++D+     Q LV+APTRELA  I+KVM ALG+YL      C GGTSVR+D+   +AG HVVVGT
Sbjct:   36 LKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRIDHEDPHVQALVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLEAGIHVVVGT 154          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A1_PONAB (Eukaryotic initiation factor 4A-I OS=Pongo abelii GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.341e-31
Identity = 72/120 (60.00%), Postives = 88/120 (73.33%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVR-EDKGICQAGGHVVVGT 680
            L E+LLRGIYA+GFEKPSA ++R I+   KG DVI QAQ+GTGKTATF   ILQQ++  L   Q LVLAPTRELA  I+KV+ ALGDY+G   HAC GGT+VR E + +     H++VGT
Sbjct:   39 LSESLLRGIYAYGFEKPSAIQQRAILSCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGT 158          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A_CRYNE (ATP-dependent RNA helicase eIF4A OS=Cryptococcus neoformans GN=TIF1 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.994e-31
Identity = 71/119 (59.66%), Postives = 86/119 (72.27%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+  LLRGIYA+GFE+PSA ++R I+P   G D I QAQ+GTGKTATF   ILQ++D  + + Q LVLAPTRELA  I+KV+ ALGDYL    HAC GGT+VRED      G H+VVGT
Sbjct:   35 LKGELLRGIYAYGFERPSAIQQRAIMPIVTGRDCIAQAQSGTGKTATFSVSILQRIDTTVKKTQALVLAPTRELAQQIQKVVIALGDYLNVDCHACVGGTAVREDIARLNEGPHIVVGT 153          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: I4A3B_XENLA (Eukaryotic initiation factor 4A-III-B OS=Xenopus laevis GN=eif4a3-B PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.812e-31
Identity = 69/119 (57.98%), Postives = 87/119 (73.11%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+E+LLRGIYA+GFEKPSA +++ I    KG DVI Q+Q+GTGKTATFC  +LQ LD  + + Q L+LAPT+ELA  I+KV+ ALGDY+  + HAC GGT+V ED      G HVV GT
Sbjct:   48 LREDLLRGIYAYGFEKPSAIQQKAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQIRETQALILAPTKELARQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGT 166          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A_ASPTN (ATP-dependent RNA helicase eIF4A OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=tif1 PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 8.897e-31
Identity = 66/119 (55.46%), Postives = 87/119 (73.11%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+  LLRG+YA+GFE+PSA ++R I+P  KG DVI QAQ+GTGKTATF    LQ++D  L  CQ L++APTRELA  I+KV+ A+GD++    HAC GGT++R+D    Q G  +VVGT
Sbjct:   30 LKAELLRGVYAYGFERPSAIQQRAIMPIIKGNDVIAQAQSGTGKTATFSISALQKIDPNLKACQALIVAPTRELAQQIQKVVVAIGDFMNINCHACIGGTAIRDDMKALQEGPPIVVGT 148          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: FAL1_COCIM (ATP-dependent RNA helicase FAL1 OS=Coccidioides immitis GN=FAL1 PE=3 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 1.162e-30
Identity = 70/119 (58.82%), Postives = 84/119 (70.59%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+ENLLRGIYA+GFE PSA + R IV  CKG D I QAQ+GTGKTATF   ILQ +D  L + Q LVL+PTRELA  I+ V+ A+GDY+  + HAC GGT+V +D      G HVV GT
Sbjct:   32 LKENLLRGIYAYGFESPSAIQSRAIVQICKGRDTIAQAQSGTGKTATFAISILQVIDTALRETQALVLSPTRELATQIQNVIMAVGDYMNVQCHACIGGTNVGDDIRKLDHGQHVVSGT 150          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: FAL1_AJECN (ATP-dependent RNA helicase FAL1 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.518e-30
Identity = 71/119 (59.66%), Postives = 84/119 (70.59%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+ENLLRGIYA+G+E PSA + R IV  CKG D I QAQ+GTGKTATF   ILQ +D  L + Q LVL+PTRELA  I+ V+ ALGDY+  + HAC GGT+V ED      G HVV GT
Sbjct:   32 LKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVLRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDHGQHVVSGT 150          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A_YARLI (ATP-dependent RNA helicase eIF4A OS=Yarrowia lipolytica GN=TIF1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.900e-30
Identity = 65/119 (54.62%), Postives = 86/119 (72.27%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L++ LLRGIY +GFE PS+ ++R I+P  KG DV+ QAQ+GTGKTATF    LQ +D  + + Q L++APTRELA  I+KV+ A G+Y+  + HAC GGTSV ED  + Q G HV+VGT
Sbjct:   29 LKDELLRGIYGYGFENPSSIQQRAILPVIKGNDVLAQAQSGTGKTATFSISALQNIDEKIKKPQALIIAPTRELAHQIQKVVLAFGEYMKIECHACIGGTSVAEDIRVIQEGVHVIVGT 147          

HSP 2 Score: 24.2534 bits (51), Expect = 1.900e-30
Identity = 11/22 (50.00%), Postives = 13/22 (59.09%), Query Frame = 2
Query:  281 TSYDEVYDSFDALGTAGKPFEG 346
            T+YDEV  SFD LG   +   G
Sbjct:   15 TNYDEVVTSFDDLGLKDELLRG 36          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: FAL1_CRYNE (ATP-dependent RNA helicase FAL1 OS=Cryptococcus neoformans GN=FAL1 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.589e-30
Identity = 70/119 (58.82%), Postives = 86/119 (72.27%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+E+LLRGIYA+ FEKPSA ++R I+P  +G DVI QAQ+GTGKTATF   +LQ +D  L + Q LVL+PTRELA  I+ V+ ALGDY+    HAC GGTSV ED    +AG  VV GT
Sbjct:   30 LKEDLLRGIYAYNFEKPSAIQQRAIIPIIRGRDVIAQAQSGTGKTATFSISMLQSIDTNLRETQALVLSPTRELAVQIQTVVLALGDYMNVSCHACIGGTSVGEDIRKLEAGQQVVSGT 148          
The following BLAST results are available for this feature:
BLAST of EY660272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
IF4A_USTMA1.051e-3160.50ATP-dependent RNA helicase eIF4A OS=Ustilago maydi... [more]
IF4A_CAEEL1.793e-3162.18Eukaryotic initiation factor 4A OS=Caenorhabditis ... [more]
IF4A1_PONAB2.341e-3160.00Eukaryotic initiation factor 4A-I OS=Pongo abelii ... [more]
IF4A_CRYNE3.994e-3159.66ATP-dependent RNA helicase eIF4A OS=Cryptococcus n... [more]
I4A3B_XENLA6.812e-3157.98Eukaryotic initiation factor 4A-III-B OS=Xenopus l... [more]
IF4A_ASPTN8.897e-3155.46ATP-dependent RNA helicase eIF4A OS=Aspergillus te... [more]
FAL1_COCIM1.162e-3058.82ATP-dependent RNA helicase FAL1 OS=Coccidioides im... [more]
FAL1_AJECN1.518e-3059.66ATP-dependent RNA helicase FAL1 OS=Ajellomyces cap... [more]
IF4A_YARLI1.900e-3054.62ATP-dependent RNA helicase eIF4A OS=Yarrowia lipol... [more]
FAL1_CRYNE2.589e-3058.82ATP-dependent RNA helicase FAL1 OS=Cryptococcus ne... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-D06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660272 ID=EY660272; Name=EY660272; organism=Citrus sinensis; type=EST; length=933bp
TGTGGTACGCCTGAGGNACTGGTCCGGATTCTTTCANCAGGGGGGCGNCC
GCCACGGCGTGACAAGAGGAGGGTGTNAACCCNAGGAACAANANGCAGCA
AAAGAAAGAGGTGTGTCTCCAAAGAGAGAGGGAAAACCAACNCGNNCNCG
CGAAGANAANCACCAGCAGCAAAGCAGGGCAGAGATGGCTGGAAAGGCAC
CCGAAGGANCACAACCCGAAGCACGNCAGNAGGACACCAAGAAGAACGAA
CCGGNCGCGACGGAGGGGCAAGACCNCNNCACTTCTTATGATGAAGTTTA
TGACAGTTTTGATGCATTGGGTACTGCAGGAAAACCTTTTGAGGGGAATC
TATGCTTTTGGGTTTGAGAAGCCCTCTGCTAGTGAGGAAAGGGGAATTGT
TCCCTTCTGCAAGGGACTTGACGTCATTCAGCAGGCTCAGGCTGGAACTG
GGAAAACAGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGG
CTTGTCCAATGTCAGGGCCTGGTATTGGCACCCACTAGGGAACTAGCTGG
ACTGATTGAGAAAGTAATGAGGGCACTTGGCGATTATCTTGGGGGCAAGG
GTCATGCTTGTGGTGGTGGGACAAGTGTTCGCGAGGATAAGGGGATTTGT
CAAGCTGGGGGTCATGTGGTTGTTGGGACTCCTGGGGCGAGGGGTTGAAA
TGCTGCGCCGTGAGGTTTTAGCGCCCGGATTAATTTAACATGGTTGGACT
GGATGGGAGGTGATGAAAGGCTGTTCCCGGGTTGTAGGGTCGGATTTTTG
ATATTGTTGCGGAGGGTTGGGGGTAAGGTGAGGGGGGGGTCTCTCTGGGA
AATGGGTTCGGGGGGCCGGGGGATTGAGGGGAGTTGATGGAAAAGCTGGA
AGGATTTGGGGTAATGGGGGGAAATGCCCGTAG
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