EY660272

Overview
NameEY660272
Unique NameEY660272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length933
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: FAL1_CHAGB (ATP-dependent RNA helicase FAL1 OS=Chaetomium globosum GN=FAL1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.678e-29
Identity = 67/119 (56.30%), Postives = 84/119 (70.59%), Query Frame = 3 
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+E+LLRGIYA+G+E PSA + R IV  CKG D I QAQ+GTGKTATF   +LQ +D  + + Q LVL+PTRELA  I+ V+ ALGDY+  + HAC GGT+V ED      G H+V GT
Sbjct:   34 LKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGT 152
[Close]
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: FAL1_ASPOR (ATP-dependent RNA helicase fal1 OS=Aspergillus oryzae GN=fal1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.678e-29
Identity = 68/119 (57.14%), Postives = 84/119 (70.59%), Query Frame = 3 
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+E+LLRGIYA+G+E PSA + R IV  CKG D I QAQ+GTGKTATF   ILQ +D  + + Q LVL+PTRELA  I+ V+ ALGDY+  + HAC GGT++ ED      G HVV GT
Sbjct:   31 LKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVVRESQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGT 149
[Close]
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: FAL1_ASPNC (ATP-dependent RNA helicase fal1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=fal1 PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.678e-29
Identity = 68/119 (57.14%), Postives = 84/119 (70.59%), Query Frame = 3 
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+E+LLRGIYA+G+E PSA + R IV  CKG D I QAQ+GTGKTATF   ILQ +D  + + Q LVL+PTRELA  I+ V+ ALGDY+  + HAC GGT++ ED      G HVV GT
Sbjct:   32 LKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVVRESQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGT 150
[Close]
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A3_TAEGU (Eukaryotic initiation factor 4A-III OS=Taeniopygia guttata GN=EIF4A3 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.192e-29
Identity = 69/119 (57.98%), Postives = 85/119 (71.43%), Query Frame = 3 
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+E+LLRGIYA+GFEKPSA ++R I    KG DVI Q+Q+GTGKTATF   +LQ LD  + + Q L+LAPTRELA  I+K + ALGDY+  + HAC GGT+V ED      G HVV GT
Sbjct:   44 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGT 162
[Close]
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A3_RAT (Eukaryotic initiation factor 4A-III OS=Rattus norvegicus GN=Eif4a3 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.192e-29
Identity = 69/119 (57.98%), Postives = 85/119 (71.43%), Query Frame = 3 
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+E+LLRGIYA+GFEKPSA ++R I    KG DVI Q+Q+GTGKTATF   +LQ LD  + + Q L+LAPTRELA  I+K + ALGDY+  + HAC GGT+V ED      G HVV GT
Sbjct:   45 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGT 163
[Close]
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A3_PIG (Eukaryotic initiation factor 4A-III OS=Sus scrofa GN=EIF4A3 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.192e-29
Identity = 69/119 (57.98%), Postives = 85/119 (71.43%), Query Frame = 3 
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+E+LLRGIYA+GFEKPSA ++R I    KG DVI Q+Q+GTGKTATF   +LQ LD  + + Q L+LAPTRELA  I+K + ALGDY+  + HAC GGT+V ED      G HVV GT
Sbjct:   45 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGT 163
[Close]
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A3_MOUSE (Eukaryotic initiation factor 4A-III OS=Mus musculus GN=Eif4a3 PE=2 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 2.192e-29
Identity = 69/119 (57.98%), Postives = 85/119 (71.43%), Query Frame = 3 
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+E+LLRGIYA+GFEKPSA ++R I    KG DVI Q+Q+GTGKTATF   +LQ LD  + + Q L+LAPTRELA  I+K + ALGDY+  + HAC GGT+V ED      G HVV GT
Sbjct:   45 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGT 163
[Close]
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A3_HUMAN (Eukaryotic initiation factor 4A-III OS=Homo sapiens GN=EIF4A3 PE=1 SV=4)

HSP 1 Score: 129.798 bits (325), Expect = 2.192e-29
Identity = 69/119 (57.98%), Postives = 85/119 (71.43%), Query Frame = 3 
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+E+LLRGIYA+GFEKPSA ++R I    KG DVI Q+Q+GTGKTATF   +LQ LD  + + Q L+LAPTRELA  I+K + ALGDY+  + HAC GGT+V ED      G HVV GT
Sbjct:   45 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGT 163
[Close]
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A3_CHICK (Eukaryotic initiation factor 4A-III OS=Gallus gallus GN=EIF4A3 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.192e-29
Identity = 69/119 (57.98%), Postives = 85/119 (71.43%), Query Frame = 3 
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+E+LLRGIYA+GFEKPSA ++R I    KG DVI Q+Q+GTGKTATF   +LQ LD  + + Q L+LAPTRELA  I+K + ALGDY+  + HAC GGT+V ED      G HVV GT
Sbjct:   46 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGT 164
[Close]
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A3_BOVIN (Eukaryotic initiation factor 4A-III OS=Bos taurus GN=EIF4A3 PE=2 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 2.192e-29
Identity = 69/119 (57.98%), Postives = 85/119 (71.43%), Query Frame = 3 
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+E+LLRGIYA+GFEKPSA ++R I    KG DVI Q+Q+GTGKTATF   +LQ LD  + + Q L+LAPTRELA  I+K + ALGDY+  + HAC GGT+V ED      G HVV GT
Sbjct:   45 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGT 163
The following BLAST results are available for this feature:
BLAST of EY660272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
FAL1_CHAGB1.678e-2956.30ATP-dependent RNA helicase FAL1 OS=Chaetomium glob... [more]
FAL1_ASPOR1.678e-2957.14ATP-dependent RNA helicase fal1 OS=Aspergillus ory... [more]
FAL1_ASPNC1.678e-2957.14ATP-dependent RNA helicase fal1 OS=Aspergillus nig... [more]
IF4A3_TAEGU2.192e-2957.98Eukaryotic initiation factor 4A-III OS=Taeniopygia... [more]
IF4A3_RAT2.192e-2957.98Eukaryotic initiation factor 4A-III OS=Rattus norv... [more]
IF4A3_PIG2.192e-2957.98Eukaryotic initiation factor 4A-III OS=Sus scrofa ... [more]
IF4A3_MOUSE2.192e-2957.98Eukaryotic initiation factor 4A-III OS=Mus musculu... [more]
IF4A3_HUMAN2.192e-2957.98Eukaryotic initiation factor 4A-III OS=Homo sapien... [more]
IF4A3_CHICK2.192e-2957.98Eukaryotic initiation factor 4A-III OS=Gallus gall... [more]
IF4A3_BOVIN2.192e-2957.98Eukaryotic initiation factor 4A-III OS=Bos taurus ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-D06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660272 ID=EY660272; Name=EY660272; organism=Citrus sinensis; type=EST; length=933bp
TGTGGTACGCCTGAGGNACTGGTCCGGATTCTTTCANCAGGGGGGCGNCC
GCCACGGCGTGACAAGAGGAGGGTGTNAACCCNAGGAACAANANGCAGCA
AAAGAAAGAGGTGTGTCTCCAAAGAGAGAGGGAAAACCAACNCGNNCNCG
CGAAGANAANCACCAGCAGCAAAGCAGGGCAGAGATGGCTGGAAAGGCAC
CCGAAGGANCACAACCCGAAGCACGNCAGNAGGACACCAAGAAGAACGAA
CCGGNCGCGACGGAGGGGCAAGACCNCNNCACTTCTTATGATGAAGTTTA
TGACAGTTTTGATGCATTGGGTACTGCAGGAAAACCTTTTGAGGGGAATC
TATGCTTTTGGGTTTGAGAAGCCCTCTGCTAGTGAGGAAAGGGGAATTGT
TCCCTTCTGCAAGGGACTTGACGTCATTCAGCAGGCTCAGGCTGGAACTG
GGAAAACAGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGG
CTTGTCCAATGTCAGGGCCTGGTATTGGCACCCACTAGGGAACTAGCTGG
ACTGATTGAGAAAGTAATGAGGGCACTTGGCGATTATCTTGGGGGCAAGG
GTCATGCTTGTGGTGGTGGGACAAGTGTTCGCGAGGATAAGGGGATTTGT
CAAGCTGGGGGTCATGTGGTTGTTGGGACTCCTGGGGCGAGGGGTTGAAA
TGCTGCGCCGTGAGGTTTTAGCGCCCGGATTAATTTAACATGGTTGGACT
GGATGGGAGGTGATGAAAGGCTGTTCCCGGGTTGTAGGGTCGGATTTTTG
ATATTGTTGCGGAGGGTTGGGGGTAAGGTGAGGGGGGGGTCTCTCTGGGA
AATGGGTTCGGGGGGCCGGGGGATTGAGGGGAGTTGATGGAAAAGCTGGA
AGGATTTGGGGTAATGGGGGGAAATGCCCGTAG
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