EY660272

Overview
NameEY660272
Unique NameEY660272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length933
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: FAL1_DEBHA (ATP-dependent RNA helicase FAL1 OS=Debaryomyces hansenii GN=FAL1 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.598e-26
Identity = 61/119 (51.26%), Postives = 78/119 (65.55%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+ +LL+GIY +GFE PSA + R I+    G D I QAQ+GTGKTATF  G+L+ +D     CQ L+L+PTRELA  I+ V++ LGDY+    HAC GGT V ED    Q G  +V GT
Sbjct:   33 LKTDLLKGIYGYGFEAPSAIQSRAIMQIISGKDTIAQAQSGTGKTATFSIGMLEVIDTKSKDCQALILSPTRELAQQIQSVVKHLGDYMNVHTHACIGGTHVGEDIKKLQQGQQIVSGT 151          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: FAL1_CANAL (ATP-dependent RNA helicase FAL1 OS=Candida albicans GN=FAL1 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.598e-26
Identity = 61/119 (51.26%), Postives = 80/119 (67.23%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+ +LL+GIYA+GFE PSA + R I+    G D I QAQ+GTGKTATF  G+L+ +D    +CQ L+L+PTRELA  I+ V++ LGDY+    HAC GG +V ED    Q G  +V GT
Sbjct:   33 LKPDLLKGIYAYGFETPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLEVIDTKSKECQALILSPTRELAIQIQNVVKHLGDYMNIHTHACIGGKNVGEDVKKLQQGQQIVSGT 151          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: FAL1_PICST (ATP-dependent RNA helicase FAL1 OS=Pichia stipitis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.126e-25
Identity = 60/119 (50.42%), Postives = 78/119 (65.55%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+ +LL+GIY +GFE PSA + R I+    G D I QAQ+GTGKTATF  G+LQ +D     CQ L+L+PTRELA  I+ V++ LGDY+    HAC GGT V +D    + G  +V GT
Sbjct:   33 LKPDLLKGIYGYGFEAPSAIQSRAIMQIINGRDTIAQAQSGTGKTATFSIGMLQAIDTNAKDCQALILSPTRELAVQIQNVVKHLGDYMNIHTHACIGGTHVGDDIKKLKQGQQIVSGT 151          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A_DICDI (Eukaryotic initiation factor 4A OS=Dictyostelium discoideum GN=tifA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.470e-25
Identity = 60/119 (50.42%), Postives = 82/119 (68.91%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+E LLRGI+ +GFEKPSA ++R I+P  KG D I QAQ+GTGKTATF  G LQ ++  +   Q L+L+PTRELA  I+KV  AL +++  + HAC GG ++ +D    + G H+V GT
Sbjct:   39 LREELLRGIFNYGFEKPSAIQQRAILPIIKGRDTIAQAQSGTGKTATFSIGALQCVEVNVRSPQVLILSPTRELAQQIQKVALALSEFMNIQVHACVGGKNLSDDVKKLETGVHIVSGT 157          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A_LEIMA (Probable eukaryotic initiation factor 4A OS=Leishmania major GN=LMJ_0078 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.507e-25
Identity = 62/122 (50.82%), Postives = 82/122 (67.21%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACG---GGTSVREDKGICQAGGHVVVGT 680
            L +NLLRGIY++GFEKPS+ ++R I PF +G D+I QAQ+GTGKT  F  G+LQ+LD+     QGLVL+PTRELA    +V+  +G++L      C    GGT V++D    QAG  V VGT
Sbjct:   33 LHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNLIQGLVLSPTRELALQTAEVISRIGEFLSNSSKFCETFVGGTRVQDDLRKLQAGVIVAVGT 154          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A_LEIIN (Probable eukaryotic initiation factor 4A OS=Leishmania infantum GN=LinJ01.0780 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.507e-25
Identity = 62/122 (50.82%), Postives = 82/122 (67.21%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACG---GGTSVREDKGICQAGGHVVVGT 680
            L +NLLRGIY++GFEKPS+ ++R I PF +G D+I QAQ+GTGKT  F  G+LQ+LD+     QGLVL+PTRELA    +V+  +G++L      C    GGT V++D    QAG  V VGT
Sbjct:   33 LHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNLIQGLVLSPTRELALQTAEVISRIGEFLSNSSKFCETFVGGTRVQDDLRKLQAGVIVAVGT 154          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A_LEIBR (Probable eukaryotic initiation factor 4A OS=Leishmania braziliensis GN=LbrM01_V2.0740 PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 2.507e-25
Identity = 62/122 (50.82%), Postives = 82/122 (67.21%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACG---GGTSVREDKGICQAGGHVVVGT 680
            L +NLLRGIY++GFEKPS+ ++R I PF +G D+I QAQ+GTGKT  F  G+LQ+LD+     QGLVL+PTRELA    +V+  +G++L      C    GGT V++D    QAG  V VGT
Sbjct:   33 LHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNLIQGLVLSPTRELALQTAEVISRIGEFLSNSAKFCETFVGGTRVQDDLRKLQAGVVVAVGT 154          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A_TRYCR (Probable eukaryotic initiation factor 4A OS=Trypanosoma cruzi GN=Tc00.1047053511585.190 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.275e-25
Identity = 64/123 (52.03%), Postives = 83/123 (67.48%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLG-GKGHACG---GGTSVREDKGICQAGGHVVVGT 680
            L +NLLRGIY+ GFEKPS+ ++R IVPF +G D+I QAQ+GTGKT  F  G+LQ+LD+     QGLVL+PTRELA    +V+  +G++L  G    C    GGT V++D    QAG  V VGT
Sbjct:   33 LHQNLLRGIYSHGFEKPSSIQQRAIVPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNVLQGLVLSPTRELALQTAEVITRIGEFLAEGNSSFCATFVGGTRVQDDYRKLQAGSIVAVGT 155          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A3_NICPL (Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.277e-25
Identity = 58/119 (48.74%), Postives = 80/119 (67.23%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            ++++LLRG+Y +GFEKPSA ++R ++P   G DVI QAQ+GTGKT+     + Q +D    + Q L+L+PTRELA   EKV+ A+GDY+  + HAC GG SV ED    + G  VV GT
Sbjct:   25 IKDDLLRGVYQYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMIALTVCQIVDTKSSEVQALILSPTRELAAQTEKVILAIGDYINVQAHACIGGKSVGEDIRKLEHGVQVVSGT 143          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: FAL1_LODEL (ATP-dependent RNA helicase FAL1 OS=Lodderomyces elongisporus GN=FAL1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.277e-25
Identity = 61/119 (51.26%), Postives = 79/119 (66.39%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+  LL+GIYA+GFE PSA + R I+    G D I QAQ+GTGKTATF  G+L+ LD    +CQ LVL+PTRELA  I+ V++ LGDY+  + +AC GG +V  D    Q G  +V GT
Sbjct:   33 LKPELLKGIYAYGFEAPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLEVLDSKSKECQALVLSPTRELATQIQNVIKHLGDYMNIQTYACIGGKNVGTDIKRLQQGQQIVSGT 151          
The following BLAST results are available for this feature:
BLAST of EY660272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
FAL1_DEBHA6.598e-2651.26ATP-dependent RNA helicase FAL1 OS=Debaryomyces ha... [more]
FAL1_CANAL6.598e-2651.26ATP-dependent RNA helicase FAL1 OS=Candida albican... [more]
FAL1_PICST1.126e-2550.42ATP-dependent RNA helicase FAL1 OS=Pichia stipitis... [more]
IF4A_DICDI1.470e-2550.42Eukaryotic initiation factor 4A OS=Dictyostelium d... [more]
IF4A_LEIMA2.507e-2550.82Probable eukaryotic initiation factor 4A OS=Leishm... [more]
IF4A_LEIIN2.507e-2550.82Probable eukaryotic initiation factor 4A OS=Leishm... [more]
IF4A_LEIBR2.507e-2550.82Probable eukaryotic initiation factor 4A OS=Leishm... [more]
IF4A_TRYCR3.275e-2552.03Probable eukaryotic initiation factor 4A OS=Trypan... [more]
IF4A3_NICPL4.277e-2548.74Eukaryotic initiation factor 4A-3 OS=Nicotiana plu... [more]
FAL1_LODEL4.277e-2551.26ATP-dependent RNA helicase FAL1 OS=Lodderomyces el... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-D06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660272 ID=EY660272; Name=EY660272; organism=Citrus sinensis; type=EST; length=933bp
TGTGGTACGCCTGAGGNACTGGTCCGGATTCTTTCANCAGGGGGGCGNCC
GCCACGGCGTGACAAGAGGAGGGTGTNAACCCNAGGAACAANANGCAGCA
AAAGAAAGAGGTGTGTCTCCAAAGAGAGAGGGAAAACCAACNCGNNCNCG
CGAAGANAANCACCAGCAGCAAAGCAGGGCAGAGATGGCTGGAAAGGCAC
CCGAAGGANCACAACCCGAAGCACGNCAGNAGGACACCAAGAAGAACGAA
CCGGNCGCGACGGAGGGGCAAGACCNCNNCACTTCTTATGATGAAGTTTA
TGACAGTTTTGATGCATTGGGTACTGCAGGAAAACCTTTTGAGGGGAATC
TATGCTTTTGGGTTTGAGAAGCCCTCTGCTAGTGAGGAAAGGGGAATTGT
TCCCTTCTGCAAGGGACTTGACGTCATTCAGCAGGCTCAGGCTGGAACTG
GGAAAACAGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGG
CTTGTCCAATGTCAGGGCCTGGTATTGGCACCCACTAGGGAACTAGCTGG
ACTGATTGAGAAAGTAATGAGGGCACTTGGCGATTATCTTGGGGGCAAGG
GTCATGCTTGTGGTGGTGGGACAAGTGTTCGCGAGGATAAGGGGATTTGT
CAAGCTGGGGGTCATGTGGTTGTTGGGACTCCTGGGGCGAGGGGTTGAAA
TGCTGCGCCGTGAGGTTTTAGCGCCCGGATTAATTTAACATGGTTGGACT
GGATGGGAGGTGATGAAAGGCTGTTCCCGGGTTGTAGGGTCGGATTTTTG
ATATTGTTGCGGAGGGTTGGGGGTAAGGTGAGGGGGGGGTCTCTCTGGGA
AATGGGTTCGGGGGGCCGGGGGATTGAGGGGAGTTGATGGAAAAGCTGGA
AGGATTTGGGGTAATGGGGGGAAATGCCCGTAG
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